Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre07.g340650 Chlamydomonas reinhardtii HOM05D005054 ORTHO05D005948 1.6e-106 389.4 198 100.0
CAN.G9.14 Capsicum annuum HOM05D005054 ORTHO05D005948 5.7e-19 98.6 185 34.1
AUR62012426 Chenopodium quinoa HOM05D005054 ORTHO05D005948 5.7e-19 98.6 200 33.5
EL10Ac2g04185 Beta vulgaris HOM05D005054 ORTHO05D005948 7.5e-19 98.2 195 34.4
Haze_21489 Corylus avellana HOM05D005054 ORTHO05D005948 1.7e-18 97.1 187 35.8
Solyc08g041980.3 Solanum lycopersicum HOM05D005054 ORTHO05D005948 1.1e-17 94.4 180 32.8
AT2G25310 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 2.4e-17 93.2 171 33.3
AUR62031549 Chenopodium quinoa HOM05D005054 ORTHO05D005948 5.4e-17 92.0 164 36.0
FAN24G3113 Fragaria x ananassa HOM05D005054 ORTHO05D005948 5.4e-17 92.0 192 32.8
RcHm_v2.0_Chr6g0297531 Rosa chinensis HOM05D005054 ORTHO05D005948 5.4e-17 92.0 193 34.7
Sopen08g012360 Solanum pennellii HOM05D005054 ORTHO05D005948 5.4e-17 92.0 195 31.8
AL4G16690 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 7.0e-17 91.7 184 32.1
Eucgr.C02743 Eucalyptus grandis HOM05D005054 ORTHO05D005948 7.0e-17 91.7 183 34.4
FAN15G2263 Fragaria x ananassa HOM05D002641 ORTHO05D005948 7.0e-17 91.7 192 32.8
FvH4_2g28770 Fragaria vesca HOM05D005054 ORTHO05D005948 9.1e-17 91.3 192 32.3
MD08G1157200 Malus domestica HOM05D005054 ORTHO05D005948 9.1e-17 91.3 184 34.2
THA.LOC104803846 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 9.1e-17 91.3 187 32.6
Carub.0004s0494 Capsella rubella HOM05D005054 ORTHO05D005948 1.2e-16 90.9 184 31.5
CARHR116210 Cardamine hirsuta HOM05D005054 ORTHO05D005948 1.2e-16 90.9 184 32.1
Os06g0644100 Oryza sativa ssp. japonica HOM05D005054 ORTHO05D005948 1.2e-16 90.9 147 37.4
TWI32G1290 Tripterygium wilfordii HOM05D005054 ORTHO05D005948 1.6e-16 90.5 176 33.5
CsaV3_3G046210 Cucumis sativus L. HOM05D005054 ORTHO05D005948 2.0e-16 90.1 188 33.5
Duzib187G0432 Durio zibethinus HOM05D005054 ORTHO05D005948 2.0e-16 90.1 194 33.0
Thhalv10026275m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 2.0e-16 90.1 187 34.2
Thecc.09G021500 Theobroma cacao HOM05D005054 ORTHO05D005948 2.0e-16 90.1 200 34.0
AT4G32130 Arabidopsis thaliana HOM05D005054 ORTHO05D005948 2.7e-16 89.7 175 34.9
Cpa.g.sc187.3 Carica papaya HOM05D005054 ORTHO05D005948 2.7e-16 89.7 183 30.6
HPP92_000468 Vanilla planifolia HOM05D005054 ORTHO05D005948 2.7e-16 89.7 186 33.9
Actinidia14591 Actinidia chinensis HOM05D005054 ORTHO05D005948 3.5e-16 89.4 190 32.6
Gohir.A07G029500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 3.5e-16 89.4 197 33.0
Gohir.A06G099200 Gossypium hirsutum HOM05D005054 ORTHO05D005948 4.5e-16 89.0 193 34.2
Gohir.D06G101400 Gossypium hirsutum HOM05D005054 ORTHO05D005948 4.5e-16 89.0 194 34.0
Gorai.001G035100 Gossypium raimondii HOM05D005054 ORTHO05D005948 4.5e-16 89.0 197 33.0
AL7G19730 Arabidopsis lyrata HOM05D005054 ORTHO05D005948 5.9e-16 88.6 184 32.6
Gohir.D07G033500 Gossypium hirsutum HOM05D005054 ORTHO05D005948 5.9e-16 88.6 197 33.0
Nn2g12158 Nelumbo nucifera HOM05D005054 ORTHO05D005948 5.9e-16 88.6 186 36.0
HanXRQChr13g0403241 Helianthus annuus HOM05D005054 ORTHO05D005948 7.7e-16 88.2 190 34.7
MD15G1128300 Malus domestica HOM05D005054 ORTHO05D005948 7.7e-16 88.2 183 32.2
Sed0004415 Sechium edule HOM05D005054 ORTHO05D005948 7.7e-16 88.2 175 33.7
VMungo1309G0253 Vigna mungo HOM05D005054 ORTHO05D005948 7.7e-16 88.2 174 33.9
Migut.A00022 Erythranthe guttata HOM05D005054 ORTHO05D005948 1.0e-15 87.8 193 31.6
FAN20G0036 Fragaria x ananassa HOM05D005054 ORTHO05D005948 1.0e-15 87.8 192 31.8
HanXRQChr02g0050341 Helianthus annuus HOM05D005054 ORTHO05D005948 1.0e-15 87.8 176 34.7
Lsat_1_v5_gn_6_20280 Lactuca sativa HOM05D005054 ORTHO05D005948 1.0e-15 87.8 176 34.1
Mapoly0003s0100 Marchantia polymorpha HOM05D005054 ORTHO05D005948 1.0e-15 87.8 182 30.2
Phvul.009G091300 Phaseolus vulgaris HOM05D005054 ORTHO05D005948 1.0e-15 87.8 174 33.9
PGR083G2649 Punica granatum HOM05D005054 ORTHO05D005948 1.0e-15 87.8 190 32.1
A09p55700 Brassica napus HOM05D005054 ORTHO05D005948 1.3e-15 87.4 196 32.7
CSS0023723 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 1.3e-15 87.4 193 32.1
CSS0024153 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 1.3e-15 87.4 193 32.1
Thhalv10000323m.g Eutrema salsugineum HOM05D005054 ORTHO05D005948 1.3e-15 87.4 197 30.5
Sp4g04450 Schrenkiella parvula HOM05D005054 ORTHO05D005948 1.3e-15 87.4 184 31.5
Zm00001eb275230 Zea mays HOM05D005054 ORTHO05D005948 1.3e-15 87.4 175 33.1
COL.COLO4_18886 Corchorus olitorius HOM05D002641 ORTHO05D001537 1.7e-15 87.0 162 33.3
Glyma.06G066400 Glycine max HOM05D005054 ORTHO05D005948 1.7e-15 87.0 188 34.6
Prupe.1G483600 Prunus persica HOM05D005054 ORTHO05D005948 1.7e-15 87.0 179 32.4
Actinidia33783 Actinidia chinensis HOM05D005054 ORTHO05D005948 2.2e-15 86.7 132 34.8
BraA09t40971Z Brassica rapa HOM05D005054 ORTHO05D005948 2.2e-15 86.7 205 31.7
Ciclev10009464m.g Citrus clementina HOM05D005054 ORTHO05D005948 2.2e-15 86.7 187 34.8
Cc08_g00410 Coffea canephora HOM05D005054 ORTHO05D005948 2.2e-15 86.7 202 31.2
FAN27G2872 Fragaria x ananassa HOM05D005054 ORTHO05D005948 2.2e-15 86.7 192 31.8
Sp7g29920 Schrenkiella parvula HOM05D005054 ORTHO05D005948 2.2e-15 86.7 183 32.8
unitig_0.g694 Utricularia gibba HOM05D005054 ORTHO05D005948 2.2e-15 86.7 157 35.7
Actinidia22328 Actinidia chinensis HOM05D005054 ORTHO05D005948 2.9e-15 86.3 177 33.9
ATR0767G140 Amborella trichopoda HOM05D005054 ORTHO05D005948 2.9e-15 86.3 166 33.7
Aqoxy7G03608 Aquilegia oxysepala HOM05D005054 ORTHO05D005948 2.9e-15 86.3 208 32.7
arahy.Tifrunner.gnm1.ann1.NJ6IKW Arachis hypogaea HOM05D005054 ORTHO05D005948 2.9e-15 86.3 169 32.5
BcaC07g40871 Brassica carinata HOM05D005054 ORTHO05D005948 2.9e-15 86.3 196 32.1
Gorai.010G116300 Gossypium raimondii HOM05D005054 ORTHO05D005948 2.9e-15 86.3 193 32.6
Sc06g0000550 Simmondsia chinensis HOM05D005054 ORTHO05D005948 2.9e-15 86.3 205 32.7
THA.LOC104803647 Tarenaya hassleriana HOM05D005054 ORTHO05D005948 2.9e-15 86.3 168 32.1
BcaB08g35175 Brassica carinata HOM05D005054 ORTHO05D005948 3.8e-15 85.9 196 32.7
BcaC09g52000 Brassica carinata HOM05D005054 ORTHO05D005948 3.8e-15 85.9 183 32.2
Ca_15755_v3 Cicer arietinum L. HOM05D005054 ORTHO05D005948 3.8e-15 85.9 168 33.9
MELO3C003718.2 Cucumis melo HOM05D005054 ORTHO05D005948 3.8e-15 85.9 188 32.4
ECA233G2586 Erigeron canadensis HOM05D005054 ORTHO05D005948 5.0e-15 85.5 188 34.0
GSVIVG01035953001 Vitis vinifera HOM05D005054 ORTHO05D005948 5.0e-15 85.5 177 32.2
AagrBONN_evm.TU.Sc2ySwM_362.161 Anthoceros agrestis HOM05D005054 ORTHO05D005948 6.5e-15 85.1 156 33.3
CANSAT78G0154 Cannabis sativa HOM05D005054 ORTHO05D005948 6.5e-15 85.1 187 33.7
Lj8A723T59 Lonicera japonica HOM05D005054 ORTHO05D005948 6.5e-15 85.1 146 36.3
MSTRG.26017 Avicennia marina HOM05D005054 ORTHO05D005948 8.5e-15 84.7 186 34.9
Carub.0007s0843 Capsella rubella HOM05D005054 ORTHO05D005948 8.5e-15 84.7 175 33.7
ClCG05G016710 Citrullus lanatus HOM05D005054 ORTHO05D005948 8.5e-15 84.7 191 33.5
TPR.G3145 Trifolium pratense HOM05D005054 ORTHO05D005948 8.5e-15 84.7 143 35.0
BolC1t00678H Brassica oleracea HOM05D005054 ORTHO05D005948 1.1e-14 84.3 187 31.6
CDE12G0076 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 1.1e-14 84.3 186 32.3
Hund25870 Selenicereus undatus HOM05D005054 ORTHO05D005948 1.1e-14 84.3 192 31.2
CARHR240040 Cardamine hirsuta HOM05D005054 ORTHO05D005948 1.5e-14 84.0 175 31.4
Dinv18198 Davidia involucrata HOM05D005054 ORTHO05D005948 1.5e-14 84.0 156 34.6
Glyma.04G065200 Glycine max HOM05D005054 ORTHO05D005948 1.5e-14 84.0 188 33.5
PSO170G1976 Papaver somniferum HOM05D005054 ORTHO05D005948 1.5e-14 84.0 176 33.0
CiPaw.07G225400 Carya illinoinensis HOM05D005054 ORTHO05D005948 1.9e-14 83.6 180 33.3
Lj1g0015588 Lotus japonicus HOM05D005054 ORTHO05D005948 1.9e-14 83.6 188 34.0
Lalb_Chr23g0268431 Lupinus albus HOM05D005054 ORTHO05D005948 1.9e-14 83.6 165 33.3
Manes.16G124300 Manihot esculenta HOM05D005054 ORTHO05D005948 1.9e-14 83.6 188 33.0
PSO017G3131 Papaver somniferum HOM05D005054 ORTHO05D005948 1.9e-14 83.6 180 31.7
Psat5g031480 Pisum sativum HOM05D005054 ORTHO05D005948 1.9e-14 83.6 168 32.7
Potri.018G024600 Populus trichocarpa HOM05D005054 ORTHO05D005948 1.9e-14 83.6 185 32.4
Medtr3g106570 Medicago truncatula HOM05D005054 ORTHO05D005948 2.5e-14 83.2 143 35.0
BcaNung03140 Brassica carinata HOM05D005054 ORTHO05D005948 4.2e-14 82.4 183 31.1
Nitab4.5_0003389g0010 Nicotiana tabacum HOM05D005054 ORTHO05D005948 4.2e-14 82.4 200 30.5
Potri.006G257100 Populus trichocarpa HOM05D005054 ORTHO05D005948 4.2e-14 82.4 185 31.4
BraA01t00585Z Brassica rapa HOM05D005054 ORTHO05D005948 5.5e-14 82.0 170 30.6
CiPaw.08G009700 Carya illinoinensis HOM05D005054 ORTHO05D005948 5.5e-14 82.0 154 35.7
QL02p021123 Quercus lobata HOM05D005054 ORTHO05D005948 7.2e-14 81.6 183 33.3
C08p38700 Brassica napus HOM05D005054 ORTHO05D005948 1.2e-13 80.9 202 31.2
CSS0023128 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 1.2e-13 80.9 173 31.8
CSS0037696 Camellia sinensis var. sinensis HOM05D005054 ORTHO05D005948 1.2e-13 80.9 173 31.8
SalBow4G2693 Salvia bowleyana HOM05D005054 ORTHO05D005948 1.2e-13 80.9 193 33.7
TAR626G0177 Trochodendron aralioides HOM05D005054 ORTHO05D005948 1.2e-13 80.9 182 33.0
Lalb_Chr08g0244231 Lupinus albus HOM05D005054 ORTHO05D005948 1.6e-13 80.5 189 32.8
Sopen06g024410 Solanum pennellii HOM05D005054 ORTHO05D005948 1.6e-13 80.5 173 31.2
BolC8t51440H Brassica oleracea HOM05D005054 ORTHO05D005948 2.1e-13 80.1 202 31.2
CBR_g24053 Chara braunii HOM05D005054 ORTHO05D005948 2.1e-13 80.1 161 32.3
SMO354G0008 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 2.7e-13 79.7 133 33.8
TAR625G0984 Trochodendron aralioides HOM05D005054 ORTHO05D005948 3.6e-13 79.3 209 31.1
Solyc06g065930.4 Solanum lycopersicum HOM05D005054 ORTHO05D005948 4.7e-13 79.0 173 30.6
Manes.03G012900 Manihot esculenta HOM05D005054 ORTHO05D005948 6.1e-13 78.6 199 33.2
Nitab4.5_0000109g0420 Nicotiana tabacum HOM05D005054 ORTHO05D005948 6.1e-13 78.6 152 33.6
CAN.G1475.8 Capsicum annuum HOM05D005054 ORTHO05D005948 1.0e-12 77.8 198 30.3
MBI14_g36925_MAGBIO Magnolia biondii HOM05D005054 ORTHO05D005948 1.0e-12 77.8 134 35.8
Pp3c25_10780 Physcomitrium patens HOM05D005054 ORTHO05D005948 1.4e-12 77.4 134 34.3
PGSC0003DMG400029900 Solanum tuberosum HOM05D005054 ORTHO05D005948 1.8e-12 77.0 116 36.2
vmacro11190 Vaccinium macrocarpon HOM05D005054 ORTHO05D005948 3.0e-12 76.3 116 37.9
Zm00001eb387020 Zea mays HOM05D005054 ORTHO05D005948 4.0e-12 75.9 159 33.3
Nitab4.5_0005785g0040 Nicotiana tabacum HOM05D005054 ORTHO05D005948 6.8e-12 75.1 116 37.1
Rhsim02G0203400 Rhododendron simsii HOM05D005054 ORTHO05D005948 1.5e-11 73.9 116 36.2
Sabra18G0027000 Salix brachista HOM05D002641 ORTHO05D001537 2.6e-11 73.2 117 36.8
CDE01G0036 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 2.8e-10 69.7 115 33.9
Atru.chr7.2466 Acer truncatum HOM05D002641 ORTHO05D001537 4.9e-10 68.9 128 33.6
Nitab4.5_0000857g0140 Nicotiana tabacum HOM05D005054 ORTHO05D005948 9.2e-09 64.7 153 33.3
Oeu024982.1 Olea europaea HOM05D005054 ORTHO05D005948 1.2e-08 64.3 118 33.9
DCAR_001545 Daucus carota HOM05D005054 ORTHO05D005948 2.0e-08 63.5 95 36.8
Zm00001eb149990 Zea mays HOM05D005054 ORTHO05D005948 2.0e-08 63.5 110 35.5
SGA_v2.0_scaffold64G21960 Striga asiatica HOM05D005054 ORTHO05D005948 2.7e-08 63.2 118 36.4
arahy.Tifrunner.gnm1.ann1.49IL45 Arachis hypogaea HOM05D005054 ORTHO05D005948 1.0e-07 61.2 95 37.9
SMO364G0469 Selaginella moellendorffii HOM05D005054 ORTHO05D005948 1.0e-07 61.2 131 29.8
CDE01G0528 Ceratophyllum demersum HOM05D005054 ORTHO05D005948 6.6e-07 58.5 87 39.1


User provided reference genes

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