Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre07.g338800 Chlamydomonas reinhardtii HOM05D005251 ORTHO05D006680 1.8e-102 375.9 187 100.0
Cre07.g338900 Chlamydomonas reinhardtii HOM05D005251 ORTHO05D006680 2.4e-91 339.0 185 92.4
Cre07.g338700 Chlamydomonas reinhardtii HOM05D005251 ORTHO05D006680 5.3e-91 337.8 172 97.7
PRCOL_00000275 Prasinoderma coloniale HOM05D005251 ORTHO05D006680 1.1e-27 127.5 183 41.5
Mapoly0009s0116 Marchantia polymorpha HOM05D005251 ORTHO05D006680 8.1e-23 111.3 164 37.2
SMO273G0018 Selaginella moellendorffii HOM05D005251 ORTHO05D006680 1.4e-22 110.5 162 38.3
MCO07G467 Micromonas commoda HOM05D005251 ORTHO05D006680 1.8e-22 110.2 182 37.4
SMO147G0126 Selaginella moellendorffii HOM05D005251 ORTHO05D006680 4.0e-22 109.0 162 37.7
Pp3c16_14300 Physcomitrium patens HOM05D005251 ORTHO05D006680 8.3e-20 101.3 163 35.6
CBR_g54012 Chara braunii HOM05D005251 ORTHO05D006680 5.4e-19 98.6 162 37.7
THA.LOC104817759 Tarenaya hassleriana HOM05D005251 ORTHO05D006680 2.8e-15 86.3 161 34.2
Aa31LG3G12780 Aethionema arabicum HOM05D005251 ORTHO05D006680 1.8e-14 83.6 161 33.5
A10p14170 Brassica napus HOM05D005251 ORTHO05D006680 1.8e-14 83.6 161 35.4
BraA10t43510Z Brassica rapa HOM05D005251 ORTHO05D006680 1.8e-14 83.6 161 35.4
CARHR270650 Cardamine hirsuta HOM05D005251 ORTHO05D006680 1.8e-14 83.6 161 34.8
AagrBONN_evm.TU.Sc2ySwM_228.1764 Anthoceros agrestis HOM05D005251 ORTHO05D006680 2.3e-14 83.2 157 35.7
BcaB08g36046 Brassica carinata HOM05D005251 ORTHO05D006680 2.3e-14 83.2 161 34.8
AL8G32750 Arabidopsis lyrata HOM05D005251 ORTHO05D006680 3.1e-14 82.8 161 34.8
BcaC04g20043 Brassica carinata HOM05D005251 ORTHO05D006680 4.0e-14 82.4 161 34.8
C09p48540 Brassica napus HOM05D005251 ORTHO05D006680 4.0e-14 82.4 161 34.8
BolC9t57695H Brassica oleracea HOM05D005251 ORTHO05D006680 4.0e-14 82.4 161 34.8
AT5G56900 Arabidopsis thaliana HOM05D005251 ORTHO05D006680 6.8e-14 81.6 161 34.8
EL10Ac8g19209 Beta vulgaris HOM05D005251 ORTHO05D006680 6.8e-14 81.6 161 33.5
Carub.0008s1736 Capsella rubella HOM05D005251 ORTHO05D006680 8.9e-14 81.3 161 34.2
Sp6g18620 Schrenkiella parvula HOM05D005251 ORTHO05D006680 2.0e-13 80.1 161 33.5
Thhalv10013022m.g Eutrema salsugineum HOM05D005251 ORTHO05D006680 3.4e-13 79.3 161 33.5
Manes.03G034200 Manihot esculenta HOM05D005251 ORTHO05D006680 1.3e-12 77.4 161 31.1
Lj4A303G24 Lonicera japonica HOM05D005251 ORTHO05D006680 1.7e-12 77.0 160 30.6
AUR62033961 Chenopodium quinoa HOM05D005251 ORTHO05D006680 4.9e-12 75.5 158 32.3
Ah.09g228240 Amaranthus hybridus HOM05D005251 ORTHO05D006680 1.1e-11 74.3 161 31.7
AUR62029068 Chenopodium quinoa HOM05D005251 ORTHO05D006680 1.1e-11 74.3 158 32.3
Cc06_g11450 Coffea canephora HOM05D005251 ORTHO05D006680 1.1e-11 74.3 161 31.1
TAR624G0724 Trochodendron aralioides HOM05D005251 ORTHO05D006680 5.4e-11 72.0 161 30.4
Ciclev10010506m.g Citrus clementina HOM05D005251 ORTHO05D006680 1.2e-10 70.9 161 28.6
PSO210G7113 Papaver somniferum HOM05D005251 ORTHO05D006680 2.1e-10 70.1 161 26.7
Aqoxy7G04044 Aquilegia oxysepala HOM05D005251 ORTHO05D006680 2.7e-10 69.7 161 31.1
Sabra06G0120400 Salix brachista HOM05D005251 ORTHO05D006680 2.7e-10 69.7 180 28.3
Thecc.09G088600 Theobroma cacao HOM05D005251 ORTHO05D006680 2.7e-10 69.7 161 30.4
PSO210G1153 Papaver somniferum HOM05D005251 ORTHO05D006680 3.5e-10 69.3 161 26.7
Zm00001eb311020 Zea mays HOM05D005251 ORTHO05D006680 3.5e-10 69.3 161 29.2
CSS0048193 Camellia sinensis var. sinensis HOM05D005251 ORTHO05D006680 6.0e-10 68.6 161 29.2
Dinv36771 Davidia involucrata HOM05D005251 ORTHO05D006680 6.0e-10 68.6 161 28.6
GSVIVG01015197001 Vitis vinifera HOM05D005251 ORTHO05D006680 6.0e-10 68.6 161 28.6
Lsat_1_v5_gn_8_87701 Lactuca sativa HOM05D005251 ORTHO05D006680 7.8e-10 68.2 161 29.2
Atru.chr7.1595 Acer truncatum HOM05D005251 ORTHO05D006680 1.0e-09 67.8 161 28.0
CSS0047543 Camellia sinensis var. sinensis HOM05D005251 ORTHO05D006680 1.0e-09 67.8 161 29.2
Sopen12g003800 Solanum pennellii HOM05D005251 ORTHO05D006680 1.0e-09 67.8 161 29.2
CAN.G1241.24 Capsicum annuum HOM05D005251 ORTHO05D006680 1.3e-09 67.4 158 29.1
Nn8g38856 Nelumbo nucifera HOM05D005251 ORTHO05D006680 1.3e-09 67.4 162 29.0
PGSC0003DMG400000278 Solanum tuberosum HOM05D005251 ORTHO05D006680 1.3e-09 67.4 161 29.8
HanXRQChr06g0178551 Helianthus annuus HOM05D005251 ORTHO05D006680 1.7e-09 67.0 158 29.1
Peaxi162Scf00498g00321 Petunia axillaris HOM05D005251 ORTHO05D006680 1.7e-09 67.0 161 28.6
PGR142G3350 Punica granatum HOM05D005251 ORTHO05D006680 2.3e-09 66.6 162 26.5
Solyc12g008870.1 Solanum lycopersicum HOM05D005251 ORTHO05D006680 2.3e-09 66.6 161 28.6
TWI34G0442 Tripterygium wilfordii HOM05D005251 ORTHO05D006680 2.3e-09 66.6 161 31.1
Duzib150G0576 Durio zibethinus HOM05D005251 ORTHO05D006680 3.0e-09 66.2 161 29.2
CANSAT56G1459 Cannabis sativa HOM05D005251 ORTHO05D006680 3.9e-09 65.9 161 28.0
CiPaw.03G215300 Carya illinoinensis HOM05D005251 ORTHO05D006680 3.9e-09 65.9 161 28.0
Rhsim05G0020500 Rhododendron simsii HOM05D005251 ORTHO05D006680 3.9e-09 65.9 161 28.6
vmacro17241 Vaccinium macrocarpon HOM05D005251 ORTHO05D006680 3.9e-09 65.9 157 29.9
Eucgr.C00887 Eucalyptus grandis HOM05D005251 ORTHO05D006680 5.1e-09 65.5 161 27.3
Gohir.A06G072900 Gossypium hirsutum HOM05D005251 ORTHO05D006680 5.1e-09 65.5 161 28.0
Os09g0364000 Oryza sativa ssp. japonica HOM05D005251 ORTHO05D006680 8.6e-09 64.7 161 27.3
COL.COLO4_18196 Corchorus olitorius HOM05D005251 ORTHO05D006680 1.1e-08 64.3 161 29.2
Potri.006G152100 Populus trichocarpa HOM05D005251 ORTHO05D006680 1.1e-08 64.3 180 26.7
HPP92_009144 Vanilla planifolia HOM05D005251 ORTHO05D006680 1.1e-08 64.3 161 29.2
Atru.BG.14.p Acer truncatum HOM05D005251 ORTHO05D006680 1.5e-08 63.9 161 29.2
Gorai.010G083200 Gossypium raimondii HOM05D005251 ORTHO05D006680 1.5e-08 63.9 161 28.0
Cpa.g.sc61.41 Carica papaya HOM05D005251 ORTHO05D006680 1.9e-08 63.5 161 29.2
CsaV3_1G040480 Cucumis sativus L. HOM05D005251 ORTHO05D006680 1.9e-08 63.5 161 29.2
Prupe.7G209200 Prunus persica HOM05D005251 ORTHO05D006680 2.5e-08 63.2 161 28.0
FAN28G0072 Fragaria x ananassa HOM05D005251 ORTHO05D006680 4.3e-08 62.4 161 26.7
Nitab4.5_0000540g0310 Nicotiana tabacum HOM05D005251 ORTHO05D006680 4.3e-08 62.4 170 27.6
FAN23G1060 Fragaria x ananassa HOM05D005251 ORTHO05D006680 7.3e-08 61.6 161 26.1
MBI04_g31157_MAGBIO Magnolia biondii HOM05D005251 ORTHO05D006680 7.3e-08 61.6 162 29.0
MSTRG.10560 Avicennia marina HOM05D005251 ORTHO05D006680 1.2e-07 60.8 161 26.7
SGA_v2.0_scaffold21G09390 Striga asiatica HOM05D005251 ORTHO05D006680 1.2e-07 60.8 158 26.6
MELO3C015476.2 Cucumis melo HOM05D005251 ORTHO05D006680 2.1e-07 60.1 161 28.6
FAN19G0073 Fragaria x ananassa HOM05D005251 ORTHO05D006680 2.1e-07 60.1 161 26.1
FvH4_1g07540 Fragaria vesca HOM05D005251 ORTHO05D006680 2.8e-07 59.7 161 26.1
VMungo1215G2738 Vigna mungo HOM05D005251 ORTHO05D006680 2.8e-07 59.7 180 27.2
Oeu018416.2 Olea europaea HOM05D005251 ORTHO05D006680 3.6e-07 59.3 158 27.2
Haze_25916 Corylus avellana HOM05D005251 ORTHO05D006680 4.7e-07 58.9 160 27.5
RcHm_v2.0_Chr2g0093421 Rosa chinensis HOM05D005251 ORTHO05D006680 4.7e-07 58.9 161 25.5
Actinidia39715 Actinidia chinensis HOM05D005251 ORTHO05D006680 6.2e-07 58.5 161 27.3
Cfa003082 Carpinus fangiana HOM05D005251 ORTHO05D006680 8.1e-07 58.2 165 25.5
ClCG03G015560 Citrullus lanatus HOM05D005251 ORTHO05D006680 1.8e-06 57.0 161 28.0
Migut.L01497 Erythranthe guttata HOM05D005251 ORTHO05D006680 4.0e-06 55.8 161 24.8


User provided reference genes

Program Settings