Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre07.g338700 Chlamydomonas reinhardtii HOM05D005251 ORTHO05D006680 9.4e-130 466.8 232 100.0
Cre07.g338800 Chlamydomonas reinhardtii HOM05D005251 ORTHO05D006680 5.0e-91 338.2 172 97.7
Cre07.g338900 Chlamydomonas reinhardtii HOM05D005251 ORTHO05D006680 1.9e-90 336.3 167 99.4
PRCOL_00000275 Prasinoderma coloniale HOM05D005251 ORTHO05D006680 2.3e-27 126.7 163 45.4
SMO273G0018 Selaginella moellendorffii HOM05D005251 ORTHO05D006680 2.9e-22 109.8 162 38.3
Mapoly0009s0116 Marchantia polymorpha HOM05D005251 ORTHO05D006680 3.8e-22 109.4 162 37.7
MCO07G467 Micromonas commoda HOM05D005251 ORTHO05D006680 5.0e-22 109.0 142 42.3
SMO147G0126 Selaginella moellendorffii HOM05D005251 ORTHO05D006680 8.5e-22 108.2 162 37.7
Pp3c16_14300 Physcomitrium patens HOM05D005251 ORTHO05D006680 1.4e-19 100.9 162 35.8
CBR_g54012 Chara braunii HOM05D005251 ORTHO05D006680 3.3e-18 96.3 160 37.5
THA.LOC104817759 Tarenaya hassleriana HOM05D005251 ORTHO05D006680 1.3e-14 84.3 160 34.4
AagrBONN_evm.TU.Sc2ySwM_228.1764 Anthoceros agrestis HOM05D005251 ORTHO05D006680 2.2e-14 83.6 137 38.7
Aa31LG3G12780 Aethionema arabicum HOM05D005251 ORTHO05D006680 1.9e-13 80.5 160 33.1
A10p14170 Brassica napus HOM05D005251 ORTHO05D006680 1.9e-13 80.5 160 35.0
BraA10t43510Z Brassica rapa HOM05D005251 ORTHO05D006680 1.9e-13 80.5 160 35.0
CARHR270650 Cardamine hirsuta HOM05D005251 ORTHO05D006680 1.9e-13 80.5 160 34.4
BcaB08g36046 Brassica carinata HOM05D005251 ORTHO05D006680 2.5e-13 80.1 160 34.4
AL8G32750 Arabidopsis lyrata HOM05D005251 ORTHO05D006680 3.2e-13 79.7 160 34.4
BcaC04g20043 Brassica carinata HOM05D005251 ORTHO05D006680 4.2e-13 79.3 160 34.4
C09p48540 Brassica napus HOM05D005251 ORTHO05D006680 4.2e-13 79.3 160 34.4
BolC9t57695H Brassica oleracea HOM05D005251 ORTHO05D006680 4.2e-13 79.3 160 34.4
AT5G56900 Arabidopsis thaliana HOM05D005251 ORTHO05D006680 7.2e-13 78.6 160 34.4
EL10Ac8g19209 Beta vulgaris HOM05D005251 ORTHO05D006680 9.4e-13 78.2 160 32.5
Carub.0008s1736 Capsella rubella HOM05D005251 ORTHO05D006680 9.4e-13 78.2 160 33.8
Thhalv10013022m.g Eutrema salsugineum HOM05D005251 ORTHO05D006680 3.6e-12 76.3 160 33.1
Lj4A303G24 Lonicera japonica HOM05D005251 ORTHO05D006680 3.6e-12 76.3 157 31.2
Sp6g18620 Schrenkiella parvula HOM05D005251 ORTHO05D006680 3.6e-12 76.3 160 32.5
Manes.03G034200 Manihot esculenta HOM05D005251 ORTHO05D006680 6.1e-12 75.5 157 31.2
AUR62033961 Chenopodium quinoa HOM05D005251 ORTHO05D006680 1.0e-11 74.7 157 31.8
AUR62029068 Chenopodium quinoa HOM05D005251 ORTHO05D006680 1.8e-11 73.9 153 31.4
Cc06_g11450 Coffea canephora HOM05D005251 ORTHO05D006680 1.8e-11 73.9 157 31.2
Ah.09g228240 Amaranthus hybridus HOM05D005251 ORTHO05D006680 5.1e-11 72.4 160 31.2
TAR624G0724 Trochodendron aralioides HOM05D005251 ORTHO05D006680 8.8e-11 71.6 157 30.6
Sabra06G0120400 Salix brachista HOM05D005251 ORTHO05D006680 3.3e-10 69.7 157 30.6
Zm00001eb311020 Zea mays HOM05D005251 ORTHO05D006680 3.3e-10 69.7 160 28.8
PSO210G7113 Papaver somniferum HOM05D005251 ORTHO05D006680 5.7e-10 68.9 157 27.4
Thecc.09G088600 Theobroma cacao HOM05D005251 ORTHO05D006680 5.7e-10 68.9 157 31.2
Ciclev10010506m.g Citrus clementina HOM05D005251 ORTHO05D006680 7.4e-10 68.6 157 28.7
PSO210G1153 Papaver somniferum HOM05D005251 ORTHO05D006680 9.7e-10 68.2 157 27.4
Aqoxy7G04044 Aquilegia oxysepala HOM05D005251 ORTHO05D006680 1.7e-09 67.4 157 31.2
vmacro17241 Vaccinium macrocarpon HOM05D005251 ORTHO05D006680 1.7e-09 67.4 161 29.8
Dinv36771 Davidia involucrata HOM05D005251 ORTHO05D006680 2.2e-09 67.0 156 28.8
HanXRQChr06g0178551 Helianthus annuus HOM05D005251 ORTHO05D006680 2.2e-09 67.0 157 29.3
Atru.chr7.1595 Acer truncatum HOM05D005251 ORTHO05D006680 2.8e-09 66.6 157 28.7
CSS0048193 Camellia sinensis var. sinensis HOM05D005251 ORTHO05D006680 2.8e-09 66.6 157 29.3
CAN.G1241.24 Capsicum annuum HOM05D005251 ORTHO05D006680 2.8e-09 66.6 156 28.8
Peaxi162Scf00498g00321 Petunia axillaris HOM05D005251 ORTHO05D006680 2.8e-09 66.6 157 28.7
GSVIVG01015197001 Vitis vinifera HOM05D005251 ORTHO05D006680 2.8e-09 66.6 157 28.7
Lsat_1_v5_gn_8_87701 Lactuca sativa HOM05D005251 ORTHO05D006680 3.7e-09 66.2 157 29.3
Sopen12g003800 Solanum pennellii HOM05D005251 ORTHO05D006680 3.7e-09 66.2 157 28.7
CSS0047543 Camellia sinensis var. sinensis HOM05D005251 ORTHO05D006680 4.8e-09 65.9 157 29.3
Duzib150G0576 Durio zibethinus HOM05D005251 ORTHO05D006680 6.3e-09 65.5 157 29.9
Nn8g38856 Nelumbo nucifera HOM05D005251 ORTHO05D006680 6.3e-09 65.5 158 29.1
PGSC0003DMG400000278 Solanum tuberosum HOM05D005251 ORTHO05D006680 6.3e-09 65.5 157 29.3
Solyc12g008870.1 Solanum lycopersicum HOM05D005251 ORTHO05D006680 8.2e-09 65.1 157 28.0
Eucgr.C00887 Eucalyptus grandis HOM05D005251 ORTHO05D006680 1.4e-08 64.3 156 28.2
Gohir.A06G072900 Gossypium hirsutum HOM05D005251 ORTHO05D006680 1.4e-08 64.3 157 28.7
Potri.006G152100 Populus trichocarpa HOM05D005251 ORTHO05D006680 1.4e-08 64.3 157 28.7
CANSAT56G1459 Cannabis sativa HOM05D005251 ORTHO05D006680 1.8e-08 63.9 157 28.0
CiPaw.03G215300 Carya illinoinensis HOM05D005251 ORTHO05D006680 1.8e-08 63.9 157 28.0
PGR142G3350 Punica granatum HOM05D005251 ORTHO05D006680 1.8e-08 63.9 157 26.8
Rhsim05G0020500 Rhododendron simsii HOM05D005251 ORTHO05D006680 1.8e-08 63.9 157 28.7
TWI34G0442 Tripterygium wilfordii HOM05D005251 ORTHO05D006680 1.8e-08 63.9 160 30.6
CsaV3_1G040480 Cucumis sativus L. HOM05D005251 ORTHO05D006680 3.1e-08 63.2 156 29.5
Nitab4.5_0000540g0310 Nicotiana tabacum HOM05D005251 ORTHO05D006680 3.1e-08 63.2 157 28.7
HPP92_009144 Vanilla planifolia HOM05D005251 ORTHO05D006680 3.1e-08 63.2 160 29.4
Atru.BG.14.p Acer truncatum HOM05D005251 ORTHO05D006680 4.1e-08 62.8 157 29.9
COL.COLO4_18196 Corchorus olitorius HOM05D005251 ORTHO05D006680 4.1e-08 62.8 160 29.4
Gorai.010G083200 Gossypium raimondii HOM05D005251 ORTHO05D006680 4.1e-08 62.8 157 28.7
Os09g0364000 Oryza sativa ssp. japonica HOM05D005251 ORTHO05D006680 5.3e-08 62.4 160 26.9
Prupe.7G209200 Prunus persica HOM05D005251 ORTHO05D006680 5.3e-08 62.4 156 28.8
Cpa.g.sc61.41 Carica papaya HOM05D005251 ORTHO05D006680 9.1e-08 61.6 157 29.3
FAN28G0072 Fragaria x ananassa HOM05D005251 ORTHO05D006680 9.1e-08 61.6 157 27.4
FAN23G1060 Fragaria x ananassa HOM05D005251 ORTHO05D006680 1.5e-07 60.8 157 26.8
Haze_25916 Corylus avellana HOM05D005251 ORTHO05D006680 2.6e-07 60.1 161 28.0
MELO3C015476.2 Cucumis melo HOM05D005251 ORTHO05D006680 2.6e-07 60.1 170 28.2
SGA_v2.0_scaffold21G09390 Striga asiatica HOM05D005251 ORTHO05D006680 2.6e-07 60.1 157 26.1
Cfa003082 Carpinus fangiana HOM05D005251 ORTHO05D006680 3.4e-07 59.7 172 25.6
FAN19G0073 Fragaria x ananassa HOM05D005251 ORTHO05D006680 4.5e-07 59.3 157 26.8
FvH4_1g07540 Fragaria vesca HOM05D005251 ORTHO05D006680 5.9e-07 58.9 157 26.8
VMungo1215G2738 Vigna mungo HOM05D005251 ORTHO05D006680 5.9e-07 58.9 157 28.7
MBI04_g31157_MAGBIO Magnolia biondii HOM05D005251 ORTHO05D006680 1.0e-06 58.2 147 28.6
RcHm_v2.0_Chr2g0093421 Rosa chinensis HOM05D005251 ORTHO05D006680 1.0e-06 58.2 157 26.1
MSTRG.10560 Avicennia marina HOM05D005251 ORTHO05D006680 1.3e-06 57.8 157 26.1
ClCG03G015560 Citrullus lanatus HOM05D005251 ORTHO05D006680 2.9e-06 56.6 156 28.2
Actinidia39715 Actinidia chinensis HOM05D005251 ORTHO05D006680 3.8e-06 56.2 157 27.4
Migut.L01497 Erythranthe guttata HOM05D005251 ORTHO05D006680 5.0e-06 55.8 157 24.8
Oeu018416.2 Olea europaea HOM05D005251 ORTHO05D006680 6.5e-06 55.5 157 26.1


User provided reference genes

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