Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre07.g337516 Chlamydomonas reinhardtii HOM05D006002 ORTHO05D007651 2.2e-264 915.6 682 100.0
CBR_g8978 Chara braunii HOM05D006002 ORTHO05D007651 1.7e-46 191.8 472 33.3
Pp3c1_22930 Physcomitrium patens HOM05D006002 ORTHO05D007651 3.6e-44 184.1 513 31.6
THA.LOC104819332 Tarenaya hassleriana HOM05D006002 ORTHO05D007651 3.3e-42 177.6 494 30.2
Eucgr.F01438 Eucalyptus grandis HOM05D006002 ORTHO05D007651 3.7e-41 174.1 497 28.6
Mapoly0051s0043 Marchantia polymorpha HOM05D006002 ORTHO05D007651 1.8e-40 171.8 511 28.8
TAR627G1081 Trochodendron aralioides HOM05D006002 ORTHO05D007651 5.3e-40 170.2 349 34.4
Solyc07g066280.3 Solanum lycopersicum HOM05D006002 ORTHO05D007651 1.2e-39 169.1 495 29.5
PSO675G3741 Papaver somniferum HOM05D006002 ORTHO05D007651 2.0e-39 168.3 343 35.9
SMO145G0236 Selaginella moellendorffii HOM05D006002 ORTHO05D007651 2.0e-39 168.3 435 31.5
Potri.003G221400 Populus trichocarpa HOM05D006002 ORTHO05D007651 2.6e-39 167.9 311 36.3
HanXRQChr11g0335201 Helianthus annuus HOM05D006002 ORTHO05D007651 4.5e-39 167.2 320 36.9
Sopen07g034460 Solanum pennellii HOM05D006002 ORTHO05D007651 4.5e-39 167.2 495 29.5
MBI02_g43301_MAGBIO Magnolia biondii HOM05D006002 ORTHO05D007651 7.7e-39 166.4 497 28.4
AagrBONN_evm.TU.Sc2ySwM_344.4971 Anthoceros agrestis HOM05D006002 ORTHO05D007651 1.0e-38 166.0 302 39.4
COL.COLO4_25103 Corchorus olitorius HOM05D006002 ORTHO05D007651 1.0e-38 166.0 430 31.2
MSTRG.16122 Avicennia marina HOM05D006002 ORTHO05D007651 2.2e-38 164.9 502 28.3
arahy.Tifrunner.gnm1.ann1.HWL53Q Arachis hypogaea HOM05D006002 ORTHO05D007651 2.9e-38 164.5 427 29.5
Migut.M01570 Erythranthe guttata HOM05D006002 ORTHO05D007651 2.9e-38 164.5 347 36.0
arahy.Tifrunner.gnm1.ann1.0RH0I3 Arachis hypogaea HOM05D006002 ORTHO05D007651 3.8e-38 164.1 427 29.5
Lj3g0018048 Lotus japonicus HOM05D006002 ORTHO05D007651 3.8e-38 164.1 264 39.8
CAN.G943.23 Capsicum annuum HOM05D006002 ORTHO05D007651 8.5e-38 162.9 310 36.8
Peaxi162Scf00232g00102 Petunia axillaris HOM05D006002 ORTHO05D007651 8.5e-38 162.9 329 34.7
TWI53G1943 Tripterygium wilfordii HOM05D006002 ORTHO05D007651 8.5e-38 162.9 319 35.1
MD10G1197800 Malus domestica HOM05D006002 ORTHO05D007651 1.1e-37 162.5 432 31.0
SGA_v2.0_scaffold7G03564 Striga asiatica HOM05D006002 ORTHO05D007651 1.1e-37 162.5 491 28.5
PSO541G1619 Papaver somniferum HOM05D006002 ORTHO05D007651 1.5e-37 162.2 343 35.0
Ah.04g163380 Amaranthus hybridus HOM05D006002 ORTHO05D007651 1.9e-37 161.8 317 34.1
Nn3g20175 Nelumbo nucifera HOM05D006002 ORTHO05D007651 1.9e-37 161.8 294 39.8
GSVIVG01020461001 Vitis vinifera HOM05D006002 ORTHO05D007651 1.9e-37 161.8 318 34.6
Hund02296 Selenicereus undatus HOM05D006002 ORTHO05D007651 2.5e-37 161.4 490 29.4
unitig_748.g7639 Utricularia gibba HOM05D006002 ORTHO05D007651 2.5e-37 161.4 311 35.0
ATR0165G036 Amborella trichopoda HOM05D006002 ORTHO05D007651 4.2e-37 160.6 318 35.2
CSS0008604 Camellia sinensis var. sinensis HOM05D006002 ORTHO05D007651 4.2e-37 160.6 311 35.4
Glyma.15G260100 Glycine max HOM05D006002 ORTHO05D007651 5.5e-37 160.2 283 37.1
Nitab4.5_0001235g0050 Nicotiana tabacum HOM05D006002 ORTHO05D007651 7.2e-37 159.8 310 35.2
Sp2g27210 Schrenkiella parvula HOM05D006002 ORTHO05D007651 7.2e-37 159.8 319 35.1
EL10Ac4g08518 Beta vulgaris HOM05D006002 ORTHO05D007651 9.4e-37 159.5 334 35.0
vmacro09790 Vaccinium macrocarpon HOM05D006002 ORTHO05D007651 1.2e-36 159.1 319 34.5
A06p30870 Brassica napus HOM05D006002 ORTHO05D007651 1.6e-36 158.7 347 34.3
PGR083G2675 Punica granatum HOM05D006002 ORTHO05D007651 1.6e-36 158.7 312 37.2
Sabra03G0164800 Salix brachista HOM05D006002 ORTHO05D007651 1.6e-36 158.7 259 39.4
AT5G64150 Arabidopsis thaliana HOM05D006002 ORTHO05D007651 2.1e-36 158.3 337 34.1
BolC3t18471H Brassica oleracea HOM05D006002 ORTHO05D007651 2.7e-36 157.9 349 35.2
FvH4_3g16091 Fragaria vesca HOM05D006002 ORTHO05D007651 2.7e-36 157.9 319 35.7
FAN11G0453 Fragaria x ananassa HOM05D006002 ORTHO05D007651 2.7e-36 157.9 319 35.7
Glyma.08G167200 Glycine max HOM05D006002 ORTHO05D007651 2.7e-36 157.9 293 38.6
Psat3g026200 Pisum sativum HOM05D006002 ORTHO05D007651 2.7e-36 157.9 429 29.1
Ciclev10020646m.g Citrus clementina HOM05D006002 ORTHO05D007651 3.6e-36 157.5 494 28.1
FAN16G0275 Fragaria x ananassa HOM05D006002 ORTHO05D007651 3.6e-36 157.5 320 35.3
Lalb_Chr25g0284701 Lupinus albus HOM05D006002 ORTHO05D007651 3.6e-36 157.5 269 38.3
PGSC0003DMG400022243 Solanum tuberosum HOM05D006002 ORTHO05D007651 3.6e-36 157.5 250 41.6
Gohir.A05G076100 Gossypium hirsutum HOM05D006002 ORTHO05D007651 4.7e-36 157.1 494 28.9
Manes.03G102600 Manihot esculenta HOM05D006002 ORTHO05D007651 4.7e-36 157.1 318 35.2
Nitab4.5_0000294g0110 Nicotiana tabacum HOM05D006002 ORTHO05D007651 4.7e-36 157.1 310 35.5
BcaC01g02672 Brassica carinata HOM05D006002 ORTHO05D007651 8.0e-36 156.4 348 34.5
Actinidia37107 Actinidia chinensis HOM05D006002 ORTHO05D007651 1.0e-35 156.0 492 27.8
Ca_09098_v3 Cicer arietinum L. HOM05D006002 ORTHO05D007651 1.0e-35 156.0 320 33.1
Phvul.005G050900 Phaseolus vulgaris HOM05D006002 ORTHO05D007651 1.0e-35 156.0 283 38.2
CANSAT56G1259 Cannabis sativa HOM05D006002 ORTHO05D007651 1.4e-35 155.6 249 40.2
CDE02G2905 Ceratophyllum demersum HOM05D006002 ORTHO05D007651 1.4e-35 155.6 492 27.8
FAN25G3512 Fragaria x ananassa HOM05D006002 ORTHO05D007651 1.4e-35 155.6 319 35.1
QL04p088541 Quercus lobata HOM05D006002 ORTHO05D007651 1.4e-35 155.6 286 38.1
CiPaw.11G062100 Carya illinoinensis HOM05D006002 ORTHO05D007651 1.8e-35 155.2 319 34.2
RcHm_v2.0_Chr5g0027061 Rosa chinensis HOM05D006002 ORTHO05D007651 1.8e-35 155.2 429 30.8
VMungo1080G0998 Vigna mungo HOM05D001395 ORTHO05D002039 2.3e-35 154.8 283 37.1
Thhalv10004403m.g Eutrema salsugineum HOM05D006002 ORTHO05D007651 3.0e-35 154.5 319 35.1
AL8G41420 Arabidopsis lyrata HOM05D006002 ORTHO05D007651 5.2e-35 153.7 337 34.1
C03p62100 Brassica napus HOM05D006002 ORTHO05D007651 5.2e-35 153.7 293 38.9
BraA06t26026Z Brassica rapa HOM05D006002 ORTHO05D007651 5.2e-35 153.7 290 37.9
Eucgr.F01442 Eucalyptus grandis HOM05D006002 ORTHO05D007651 5.2e-35 153.7 258 38.4
Aa31LG1G17780 Aethionema arabicum HOM05D006002 ORTHO05D007651 6.7e-35 153.3 262 38.2
SalBow8G1862 Salvia bowleyana HOM05D006002 ORTHO05D007651 6.7e-35 153.3 491 28.9
Cc05_g15870 Coffea canephora HOM05D006002 ORTHO05D007651 8.8e-35 152.9 347 33.1
Lsat_1_v5_gn_7_116060 Lactuca sativa HOM05D006002 ORTHO05D007651 1.1e-34 152.5 429 28.7
Haze_07820 Corylus avellana HOM05D006002 ORTHO05D007651 1.5e-34 152.1 258 39.5
Carub.0008s2494 Capsella rubella HOM05D006002 ORTHO05D007651 2.0e-34 151.8 337 33.2
MCO01G477 Micromonas commoda HOM05D006002 ORTHO05D007651 2.0e-34 151.8 323 34.7
Sc03g0007860 Simmondsia chinensis HOM05D006002 ORTHO05D007651 2.0e-34 151.8 491 28.3
Hma1.2p1_0193F.1_g084470 Hydrangea macrophylla HOM05D006002 ORTHO05D007651 3.3e-34 151.0 495 26.9
QL04p088993 Quercus lobata HOM05D006002 ORTHO05D007651 3.3e-34 151.0 280 37.9
Rhsim04G0006400 Rhododendron simsii HOM05D006002 ORTHO05D007651 3.3e-34 151.0 349 33.0
BcaB02g09782 Brassica carinata HOM05D006002 ORTHO05D007651 4.4e-34 150.6 491 27.9
Prupe.4G144100 Prunus persica HOM05D006002 ORTHO05D007651 4.4e-34 150.6 283 37.8
CARHR278060 Cardamine hirsuta HOM05D006002 ORTHO05D007651 5.7e-34 150.2 337 32.6
Hma1.2p1_0193F.1_g084460 Hydrangea macrophylla HOM05D006002 ORTHO05D007651 5.7e-34 150.2 494 26.9
Lj8A185G55 Lonicera japonica HOM05D006002 ORTHO05D007651 5.7e-34 150.2 341 33.4
Os12g0612500 Oryza sativa ssp. japonica HOM05D006002 ORTHO05D007651 7.5e-34 149.8 341 33.4
HPP92_001894 Vanilla planifolia HOM05D006002 ORTHO05D004222 7.5e-34 149.8 296 37.8
Gorai.009G080200 Gossypium raimondii HOM05D006002 ORTHO05D007651 1.7e-33 148.7 494 27.9
Medtr7g107330 Medicago truncatula HOM05D006002 ORTHO05D007651 1.7e-33 148.7 259 37.5
Aqoxy1G01586 Aquilegia oxysepala HOM05D006002 ORTHO05D007651 3.7e-33 147.5 267 37.1
Sed0002243 Sechium edule HOM05D006002 ORTHO05D007651 4.8e-33 147.1 269 36.8
ClCG11G016270 Citrullus lanatus HOM05D006002 ORTHO05D007651 8.2e-33 146.4 258 38.0
Gohir.D05G078800 Gossypium hirsutum HOM05D006002 ORTHO05D007651 5.3e-32 143.7 442 29.2
Duzib168G0541 Durio zibethinus HOM05D006002 ORTHO05D007651 7.0e-32 143.3 319 34.5
ECA236G2913 Erigeron canadensis HOM05D006002 ORTHO05D007651 9.1e-32 142.9 258 38.0
CsaV3_2G022200 Cucumis sativus L. HOM05D006002 ORTHO05D007651 1.6e-31 142.1 258 36.4
QL03p043202 Quercus lobata HOM05D006002 ORTHO05D007651 1.6e-31 142.1 280 37.5
MELO3C010553.2 Cucumis melo HOM05D006002 ORTHO05D007651 7.7e-31 139.8 252 36.5
Thecc.03G324000 Theobroma cacao HOM05D006002 ORTHO05D007651 1.0e-30 139.4 496 26.8
MBI02_g20986_MAGBIO Magnolia biondii HOM05D006002 ORTHO05D007651 3.8e-30 137.5 497 27.2
SEGI_37419 Sequoiadendron giganteum HOM05D006002 ORTHO05D007651 5.0e-30 137.1 279 36.6
Gohir.1Z049302 Gossypium hirsutum HOM05D006002 ORTHO05D007651 8.5e-30 136.3 300 35.3
PRCOL_00003514 Prasinoderma coloniale HOM05D006002 ORTHO05D007651 4.5e-23 114.0 355 32.7
MD05G1214000 Malus domestica HOM05D006002 ORTHO05D007651 7.7e-23 113.2 279 33.7
Cpa.g.sc42.82 Carica papaya HOM05D006002 ORTHO05D007651 3.0e-19 101.3 150 41.3
Dinv42524 Davidia involucrata HOM05D006002 ORTHO05D007651 6.8e-19 100.1 151 39.7
SEGI_15629 Sequoiadendron giganteum HOM05D006002 ORTHO05D007651 1.2e-18 99.4 150 40.7
QL04p062372 Quercus lobata HOM05D006002 ORTHO05D007651 4.9e-17 94.0 116 45.7
TPR.G32276 Trifolium pratense HOM05D006002 ORTHO05D007651 8.3e-17 93.2 141 39.0
AUR62035491 Chenopodium quinoa HOM05D006002 ORTHO05D007651 1.1e-16 92.8 205 36.6
Zm00001eb031660 Zea mays HOM05D006002 ORTHO05D007651 1.1e-16 92.8 97 50.5
Atru.chr2.1886 Acer truncatum HOM05D006002 ORTHO05D007651 4.1e-16 90.9 116 43.1
Cfa022974 Carpinus fangiana HOM05D006002 ORTHO05D007651 4.1e-16 90.9 116 45.7
Potri.018G000850 Populus trichocarpa HOM05D006002 ORTHO05D007651 4.1e-16 90.9 231 31.2
TPR.G18376 Trifolium pratense HOM05D006002 ORTHO05D007651 5.4e-16 90.5 117 42.7
Oeu052016.1 Olea europaea HOM05D006002 ORTHO05D007651 9.2e-16 89.7 107 46.7
Cpa.g.sc42.79 Carica papaya HOM05D006002 ORTHO05D007651 1.2e-15 89.4 116 47.4
AUR62041934 Chenopodium quinoa HOM05D006002 ORTHO05D007651 1.2e-15 89.4 205 36.1
COL.COLO4_30126 Corchorus olitorius HOM05D006002 ORTHO05D007651 5.9e-15 87.0 85 55.3
MD05G1214300 Malus domestica HOM05D006002 ORTHO05D007651 1.9e-13 82.0 103 46.6
Potri.001G003632 Populus trichocarpa HOM05D006002 ORTHO05D007651 6.1e-12 77.0 197 29.4
Actinidia35439 Actinidia chinensis HOM05D006002 ORTHO05D007651 1.8e-11 75.5 116 42.2
QL04p089868 Quercus lobata HOM05D006002 ORTHO05D007651 4.0e-11 74.3 94 50.0
BcaB04g17517 Brassica carinata HOM05D006002 ORTHO05D007651 4.4e-10 70.9 71 45.1
QL03p043192 Quercus lobata HOM05D006002 ORTHO05D007651 1.4e-08 65.9 72 51.4
QL04p089617 Quercus lobata HOM05D002182 ORTHO05D004671 1.8e-08 65.5 61 57.4


User provided reference genes

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