Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre07.g335900 Chlamydomonas reinhardtii HOM05D005921 ORTHO05D007374 1.9e-303 1045.0 519 100.0
Cre06.g309450 Chlamydomonas reinhardtii HOM05D005921 ORTHO05D007374 9.0e-64 248.8 415 39.0
TAR381G0629 Trochodendron aralioides HOM05D005921 ORTHO05D007374 5.7e-42 176.4 365 34.2
SMO116G0063 Selaginella moellendorffii HOM05D005921 ORTHO05D007374 2.4e-40 171.0 367 32.4
PSO675G2388 Papaver somniferum HOM05D005921 ORTHO05D007374 3.1e-40 170.6 369 33.6
Sc02g0003820 Simmondsia chinensis HOM05D005921 ORTHO05D007374 4.1e-40 170.2 340 36.8
Ah.05g168190 Amaranthus hybridus HOM05D005921 ORTHO05D007374 6.9e-40 169.5 336 36.9
EL10Ac1g01606 Beta vulgaris HOM05D005921 ORTHO05D007374 9.0e-40 169.1 335 35.5
Potri.005G197000 Populus trichocarpa HOM05D005921 ORTHO05D007374 9.0e-40 169.1 345 35.4
Lsat_1_v5_gn_1_5181 Lactuca sativa HOM05D005921 ORTHO05D007374 1.2e-39 168.7 340 35.0
Ciclev10003457m.g Citrus clementina HOM05D005921 ORTHO05D007374 5.9e-39 166.4 349 33.2
Migut.N02950 Erythranthe guttata HOM05D005921 ORTHO05D007374 5.9e-39 166.4 348 35.3
Aa31LG4G8950 Aethionema arabicum HOM05D005921 ORTHO05D007374 7.6e-39 166.0 371 33.7
Aqoxy6G00427 Aquilegia oxysepala HOM05D005921 ORTHO05D007374 7.6e-39 166.0 365 33.2
FAN27G2380 Fragaria x ananassa HOM05D005921 ORTHO05D007374 7.6e-39 166.0 341 34.9
HanXRQChr02g0042431 Helianthus annuus HOM05D005921 ORTHO05D007374 7.6e-39 166.0 343 34.7
ATR1120G060 Amborella trichopoda HOM05D004165 ORTHO05D005063 1.0e-38 165.6 310 35.8
CDE04G2034 Ceratophyllum demersum HOM05D005921 ORTHO05D007374 1.0e-38 165.6 338 34.9
ECA247G3881 Erigeron canadensis HOM05D005921 ORTHO05D007374 1.0e-38 165.6 338 35.2
MSTRG.22109 Avicennia marina HOM05D005921 ORTHO05D007374 1.3e-38 165.2 330 36.1
PGR044G0568 Punica granatum HOM05D005921 ORTHO05D007374 1.7e-38 164.9 366 31.7
RcHm_v2.0_Chr6g0274201 Rosa chinensis HOM05D005921 ORTHO05D007374 1.7e-38 164.9 339 34.5
DCAR_001188 Daucus carota HOM05D005921 ORTHO05D007374 2.9e-38 164.1 311 34.7
Sp5g26720 Schrenkiella parvula HOM05D005921 ORTHO05D007374 2.9e-38 164.1 374 32.6
Cfa018279 Carpinus fangiana HOM05D005921 ORTHO05D007374 3.8e-38 163.7 335 35.2
CiPaw.15G012300 Carya illinoinensis HOM05D005921 ORTHO05D007374 3.8e-38 163.7 349 34.4
CsaV3_6G004990 Cucumis sativus L. HOM05D005921 ORTHO05D007374 3.8e-38 163.7 337 34.7
Thhalv10018610m.g Eutrema salsugineum HOM05D005921 ORTHO05D007374 3.8e-38 163.7 374 32.4
MSTRG.24492 Avicennia marina HOM05D005921 ORTHO05D007374 5.0e-38 163.3 330 34.2
Manes.02G183400 Manihot esculenta HOM05D005921 ORTHO05D007374 8.5e-38 162.5 304 36.2
FvH4_2g13020 Fragaria vesca HOM05D005921 ORTHO05D007374 1.1e-37 162.2 341 34.3
Carub.0002s1845 Capsella rubella HOM05D005921 ORTHO05D007374 1.4e-37 161.8 382 31.7
FAN24G0054 Fragaria x ananassa HOM05D005921 ORTHO05D007374 1.9e-37 161.4 341 34.6
AL2G31250 Arabidopsis lyrata HOM05D005921 ORTHO05D007374 2.5e-37 161.0 371 32.1
SalBow6G1744 Salvia bowleyana HOM05D005921 ORTHO05D007374 2.5e-37 161.0 368 32.6
TWI32G1095 Tripterygium wilfordii HOM05D005921 ORTHO05D007374 2.5e-37 161.0 337 34.7
CANSAT25G0895 Cannabis sativa HOM05D005921 ORTHO05D007374 3.2e-37 160.6 338 34.9
Eucgr.F04188 Eucalyptus grandis HOM05D005921 ORTHO05D007374 3.2e-37 160.6 344 32.8
Gohir.A05G270866 Gossypium hirsutum HOM05D005921 ORTHO05D007374 3.2e-37 160.6 348 35.1
MBI01_g34168_MAGBIO Magnolia biondii HOM05D005921 ORTHO05D007374 5.5e-37 159.8 312 36.2
vmacro01494 Vaccinium macrocarpon HOM05D005921 ORTHO05D007374 5.5e-37 159.8 332 33.7
MELO3C019977.2 Cucumis melo HOM05D005921 ORTHO05D007374 7.2e-37 159.5 317 35.0
BcaB05g24658 Brassica carinata HOM05D005921 ORTHO05D007374 9.3e-37 159.1 369 32.0
Eucgr.L02800 Eucalyptus grandis HOM05D005921 ORTHO05D007374 1.2e-36 158.7 344 33.1
Gorai.009G286300 Gossypium raimondii HOM05D005921 ORTHO05D007374 1.2e-36 158.7 348 34.8
Peaxi162Scf00360g00056 Petunia axillaris HOM05D005921 ORTHO05D007374 1.2e-36 158.7 310 34.2
Prupe.8G040700 Prunus persica HOM05D005921 ORTHO05D007374 1.2e-36 158.7 337 34.1
AT1G71696 Arabidopsis thaliana HOM05D005921 ORTHO05D007374 2.1e-36 157.9 366 31.7
BcaC03g15284 Brassica carinata HOM05D005921 ORTHO05D007374 2.1e-36 157.9 347 32.9
Medtr1g097955 Medicago truncatula HOM05D005921 ORTHO05D007374 2.1e-36 157.9 305 35.7
VMungo0720G0456 Vigna mungo HOM05D005921 ORTHO05D007374 2.7e-36 157.5 313 34.8
Atru.chr13.2001 Acer truncatum HOM05D005921 ORTHO05D007374 3.6e-36 157.1 335 33.7
CSS0006668 Camellia sinensis var. sinensis HOM05D005921 ORTHO05D007374 3.6e-36 157.1 315 34.9
Thecc.08G159700 Theobroma cacao HOM05D005921 ORTHO05D007374 3.6e-36 157.1 281 35.9
Hma1.2p1_0358F.1_g134840 Hydrangea macrophylla HOM05D005921 ORTHO05D007374 4.6e-36 156.8 340 34.7
MD05G1033700 Malus domestica HOM05D005921 ORTHO05D007374 4.6e-36 156.8 336 33.6
Rhsim11G0087800 Rhododendron simsii HOM05D005921 ORTHO05D007374 4.6e-36 156.8 343 34.7
CARHR291100 Cardamine hirsuta HOM05D005921 ORTHO05D007374 6.1e-36 156.4 343 33.2
A02p17260 Brassica napus HOM05D005921 ORTHO05D007374 7.9e-36 156.0 347 33.1
GSVIVG01001409001 Vitis vinifera HOM05D005921 ORTHO05D007374 7.9e-36 156.0 350 33.1
ClCG08G007340 Citrullus lanatus HOM05D005921 ORTHO05D007374 1.3e-35 155.2 336 33.6
arahy.Tifrunner.gnm1.ann1.9JVG50 Arachis hypogaea HOM05D005921 ORTHO05D007374 1.8e-35 154.8 305 34.8
arahy.Tifrunner.gnm1.ann1.TV90AE Arachis hypogaea HOM05D005921 ORTHO05D007374 1.8e-35 154.8 305 34.8
Pp3c16_14030 Physcomitrium patens HOM05D005921 ORTHO05D007374 1.8e-35 154.8 320 33.1
Psat0s899g0040 Pisum sativum HOM05D005921 ORTHO05D007374 1.8e-35 154.8 305 34.4
Glyma.10G221400 Glycine max HOM05D005921 ORTHO05D007374 2.3e-35 154.5 305 34.8
Phvul.007G083600 Phaseolus vulgaris HOM05D005921 ORTHO05D007374 2.3e-35 154.5 311 34.7
Solyc04g072010.3 Solanum lycopersicum HOM05D005921 ORTHO05D007374 2.3e-35 154.5 349 32.7
Glyma.20G170200 Glycine max HOM05D005921 ORTHO05D007374 3.0e-35 154.1 365 31.0
C02p28900 Brassica napus HOM05D005921 ORTHO05D007374 3.9e-35 153.7 304 34.5
Ca_10662_v3 Cicer arietinum L. HOM05D005921 ORTHO05D007374 3.9e-35 153.7 305 35.1
Lalb_Chr06g0161731 Lupinus albus HOM05D005921 ORTHO05D007374 3.9e-35 153.7 398 31.2
unitig_578.g16229 Utricularia gibba HOM05D005921 ORTHO05D007374 3.9e-35 153.7 372 33.1
Duzib116G0900 Durio zibethinus HOM05D005921 ORTHO05D007374 5.1e-35 153.3 340 33.8
Lj5g0014499 Lotus japonicus HOM05D005921 ORTHO05D007374 1.5e-34 151.8 335 32.2
Hund26678 Selenicereus undatus HOM05D005921 ORTHO05D007374 1.5e-34 151.8 369 32.2
Cc10_g15280 Coffea canephora HOM05D005921 ORTHO05D007374 2.5e-34 151.0 335 33.1
Lalb_Chr02g0141581 Lupinus albus HOM05D005921 ORTHO05D007374 2.5e-34 151.0 304 35.5
Mapoly0096s0032 Marchantia polymorpha HOM05D005921 ORTHO05D007374 2.5e-34 151.0 316 33.9
Sed0007537 Sechium edule HOM05D005921 ORTHO05D007374 3.3e-34 150.6 304 33.6
Sopen04g027990 Solanum pennellii HOM05D005921 ORTHO05D007374 4.3e-34 150.2 335 32.8
TPR.G17011 Trifolium pratense HOM05D005921 ORTHO05D007374 5.7e-34 149.8 305 35.1
CAN.G1252.3 Capsicum annuum HOM05D005921 ORTHO05D007374 7.4e-34 149.4 310 33.5
Lj4A704G63 Lonicera japonica HOM05D005921 ORTHO05D007374 9.7e-34 149.1 316 33.9
FAN15G3525 Fragaria x ananassa HOM05D005921 ORTHO05D007374 2.2e-33 147.9 341 33.1
COL.COLO4_13778 Corchorus olitorius HOM05D005921 ORTHO05D007374 2.8e-33 147.5 298 35.6
AagrBONN_evm.TU.Sc2ySwM_344.3190 Anthoceros agrestis HOM05D005921 ORTHO05D007374 3.7e-33 147.1 335 32.8
Zm00001eb377250 Zea mays HOM05D005921 ORTHO05D007374 6.9e-32 142.9 322 32.6
Hma1.2p1_0358F.1_g134830 Hydrangea macrophylla HOM05D005921 ORTHO05D007374 3.4e-31 140.6 277 35.4
Lj7A383T42 Lonicera japonica HOM05D005921 ORTHO05D007374 3.4e-31 140.6 362 32.3
MCO15G195 Micromonas commoda HOM05D005921 ORTHO05D007374 8.5e-30 136.0 436 27.5
Nitab4.5_0013157g0020 Nicotiana tabacum HOM05D005921 ORTHO05D007374 1.4e-29 135.2 258 36.0
AUR62034891 Chenopodium quinoa HOM05D005921 ORTHO05D007374 7.2e-29 132.9 312 30.8
AUR62026635 Chenopodium quinoa HOM05D005921 ORTHO05D007374 2.1e-28 131.3 316 30.7
Gohir.D05G273101 Gossypium hirsutum HOM05D005921 ORTHO05D007374 7.9e-28 129.4 348 31.6
PRCOL_00005633 Prasinoderma coloniale HOM05D005921 ORTHO05D007374 7.9e-28 129.4 308 31.8
SGA_v2.0_scaffold54G19682 Striga asiatica HOM05D005921 ORTHO05D007374 1.0e-27 129.0 330 31.5
Haze_17806 Corylus avellana HOM05D005921 ORTHO05D007374 1.8e-27 128.3 269 34.6
Nn5g28835 Nelumbo nucifera HOM05D005921 ORTHO05D007374 2.3e-27 127.9 265 33.6
FAN20G2564 Fragaria x ananassa HOM05D005921 ORTHO05D007374 3.3e-26 124.0 340 30.3
HPP92_000681 Vanilla planifolia HOM05D005921 ORTHO05D007374 4.4e-26 123.6 308 31.2
Sabra05G0149900 Salix brachista HOM05D005921 ORTHO05D007374 2.2e-25 121.3 324 31.5
CBR_g30849 Chara braunii HOM05D005921 ORTHO05D007374 1.4e-24 118.6 305 30.5
Nitab4.5_0000099g0240 Nicotiana tabacum HOM05D005921 ORTHO05D007374 1.4e-24 118.6 277 32.9
Pp3c6_12100 Physcomitrium patens HOM05D005921 ORTHO05D007374 5.0e-22 110.2 266 30.8
Cpa.g.sc26.80 Carica papaya HOM05D005921 ORTHO05D007374 6.5e-22 109.8 226 33.6
Oeu017621.1 Olea europaea HOM05D005921 ORTHO05D007374 4.7e-20 103.6 188 37.8
QL02p037460 Quercus lobata HOM05D005921 ORTHO05D007374 2.0e-18 98.2 175 37.1
BolC2t08937H Brassica oleracea HOM05D005921 ORTHO05D007374 2.6e-18 97.8 178 35.4
QL02p037958 Quercus lobata HOM05D005921 ORTHO05D007374 2.6e-18 97.8 175 37.1
BraA02t06774Z Brassica rapa HOM05D005921 ORTHO05D007374 5.7e-18 96.7 178 36.0
HPP92_000638 Vanilla planifolia HOM05D005921 ORTHO05D007374 6.5e-14 83.2 260 29.2
Ciclev10003529m.g Citrus clementina HOM05D005921 ORTHO05D007374 3.2e-13 80.9 235 30.6
SHI09099 Sapria himalayana HOM05D005921 ORTHO05D007374 5.5e-13 80.1 199 32.2
Os06g0144600 Oryza sativa ssp. japonica HOM05D005921 ORTHO05D007374 7.2e-13 79.7 101 42.6
QL02p037446 Quercus lobata HOM05D005921 ORTHO05D007374 8.0e-12 76.3 149 33.6
QL02p037946 Quercus lobata HOM05D005921 ORTHO05D007374 8.0e-12 76.3 149 33.6
Zm00001eb035610 Zea mays HOM05D005921 ORTHO05D007374 1.8e-11 75.1 76 48.7
SHI09097 Sapria himalayana HOM05D005921 ORTHO05D007374 1.3e-09 68.9 72 44.4
Duzib093G1718 Durio zibethinus HOM05D005921 ORTHO05D007374 3.7e-09 67.4 72 44.4
SEGI_16149 Sequoiadendron giganteum HOM05D005921 ORTHO05D007374 6.3e-09 66.6 94 42.6
BolC2t08936H Brassica oleracea HOM05D005921 ORTHO05D007374 5.3e-08 63.5 88 36.4
BraA02t06773Z Brassica rapa HOM05D005921 ORTHO05D007374 5.3e-08 63.5 88 36.4
Zm00001eb246880 Zea mays HOM05D005921 ORTHO05D007374 1.2e-07 62.4 130 34.6


User provided reference genes

Program Settings