Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre07.g333900 Chlamydomonas reinhardtii HOM05D004069 ORTHO05D004699 2.2e-57 225.3 107 100.0
CBR_g31386 Chara braunii HOM05D004069 ORTHO05D004699 6.9e-11 70.9 88 36.4
Zm00001eb396890 Zea mays HOM05D004069 ORTHO05D004699 1.5e-10 69.7 94 37.2
Zm00001eb013640 Zea mays HOM05D004069 ORTHO05D004699 1.0e-09 67.0 100 37.0
HPP92_001127 Vanilla planifolia HOM05D004069 ORTHO05D004699 1.3e-09 66.6 96 33.3
Ah.01g005950 Amaranthus hybridus HOM05D004069 ORTHO05D004699 1.7e-09 66.2 94 34.0
Os03g0295500 Oryza sativa ssp. japonica HOM05D004069 ORTHO05D004699 2.9e-09 65.5 94 35.1
AUR62022250 Chenopodium quinoa HOM05D004069 ORTHO05D004699 3.8e-09 65.1 94 34.0
EL10Ac9g21174 Beta vulgaris HOM05D004069 ORTHO05D004699 8.4e-09 63.9 94 33.0
PGR004G0388 Punica granatum HOM05D004069 ORTHO05D004699 1.1e-08 63.5 94 33.0
Carub.0003s0574 Capsella rubella HOM05D004069 ORTHO05D004699 1.4e-08 63.2 94 33.0
THA.LOC104818836 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 1.4e-08 63.2 94 34.0
Atru.chr4.2722 Acer truncatum HOM05D004069 ORTHO05D004699 1.9e-08 62.8 94 35.1
Hund24899 Selenicereus undatus HOM05D004069 ORTHO05D004699 1.9e-08 62.8 98 31.6
vmacro08226 Vaccinium macrocarpon HOM05D004069 ORTHO05D004699 1.9e-08 62.8 94 31.9
THA.LOC104827125 Tarenaya hassleriana HOM05D004069 ORTHO05D004699 2.5e-08 62.4 94 34.0
Thhalv10021810m.g Eutrema salsugineum HOM05D004069 ORTHO05D004699 3.2e-08 62.0 94 33.0
Manes.03G189600 Manihot esculenta HOM05D004069 ORTHO05D004699 3.2e-08 62.0 94 34.0
SMO146G0136 Selaginella moellendorffii HOM05D004069 ORTHO05D004699 3.2e-08 62.0 94 33.0
Sabra08G0163600 Salix brachista HOM05D004069 ORTHO05D004699 4.2e-08 61.6 94 34.0
CANSAT54G0205 Cannabis sativa HOM05D004069 ORTHO05D004699 5.5e-08 61.2 94 31.9
CARHR080830 Cardamine hirsuta HOM05D004069 ORTHO05D004699 5.5e-08 61.2 94 31.9
Potri.008G196600 Populus trichocarpa HOM05D004069 ORTHO05D004699 5.5e-08 61.2 94 33.0
Potri.010G026000 Populus trichocarpa HOM05D004069 ORTHO05D004699 5.5e-08 61.2 94 34.0
Actinidia40204 Actinidia chinensis HOM05D004069 ORTHO05D004699 7.1e-08 60.8 93 33.3
Cpa.g.sc16.88 Carica papaya HOM05D004069 ORTHO05D004699 7.1e-08 60.8 94 33.0
Manes.15G019000 Manihot esculenta HOM05D004069 ORTHO05D004699 7.1e-08 60.8 94 33.0
Actinidia23443 Actinidia chinensis HOM05D004069 ORTHO05D004699 9.3e-08 60.5 93 33.3
Sc19g0004820 Simmondsia chinensis HOM05D004069 ORTHO05D004699 9.3e-08 60.5 93 33.3
Aa31LG11G10890 Aethionema arabicum HOM05D004069 ORTHO05D004699 1.2e-07 60.1 94 34.0
Sp3g05220 Schrenkiella parvula HOM05D004069 ORTHO05D004699 2.1e-07 59.3 94 33.0
Eucgr.B01248 Eucalyptus grandis HOM05D004069 ORTHO05D004699 3.5e-07 58.5 94 31.9
Sabra10G0013600 Salix brachista HOM05D004069 ORTHO05D004699 3.5e-07 58.5 94 33.0
CiPaw.01G155300 Carya illinoinensis HOM05D004069 ORTHO05D004699 4.6e-07 58.2 94 30.9
MCO10G196 Micromonas commoda HOM05D004069 ORTHO05D004699 4.6e-07 58.2 99 31.3
Eucgr.B01240 Eucalyptus grandis HOM05D004069 ORTHO05D004699 7.9e-07 57.4 94 31.9
Gorai.006G256800 Gossypium raimondii HOM05D004069 ORTHO05D004699 1.0e-06 57.0 94 30.9
Gohir.A09G232800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 1.8e-06 56.2 94 29.8
PGR031G1560 Punica granatum HOM05D004069 ORTHO05D004699 1.8e-06 56.2 94 31.9
Gohir.D09G233900 Gossypium hirsutum HOM05D004069 ORTHO05D004699 2.3e-06 55.8 94 29.8
Gohir.D10G164800 Gossypium hirsutum HOM05D004069 ORTHO05D004699 2.3e-06 55.8 94 27.7
Gorai.011G184000 Gossypium raimondii HOM05D004069 ORTHO05D004699 2.3e-06 55.8 94 27.7
Duzib052G0156 Durio zibethinus HOM05D004069 ORTHO05D004699 6.7e-06 54.3 94 27.7


User provided reference genes

Program Settings