Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre07.g333850 Chlamydomonas reinhardtii HOM05D003423 ORTHO05D003910 1.0e-280 969.9 683 100.0
AagrBONN_evm.TU.Sc2ySwM_228.5488 Anthoceros agrestis HOM05D003423 ORTHO05D003910 1.6e-44 185.3 216 49.1
Cc04_g00490 Coffea canephora HOM05D003423 ORTHO05D003910 6.1e-44 183.3 215 47.9
CAN.G790.42 Capsicum annuum HOM05D003423 ORTHO05D003910 8.8e-43 179.5 215 47.4
Peaxi162Scf00038g02438 Petunia axillaris HOM05D003423 ORTHO05D003910 8.8e-43 179.5 220 47.3
SalBow6G3752 Salvia bowleyana HOM05D003423 ORTHO05D003910 8.8e-43 179.5 215 47.4
vmacro18704 Vaccinium macrocarpon HOM05D003423 ORTHO05D003910 1.5e-42 178.7 218 47.7
RcHm_v2.0_Chr2g0150321 Rosa chinensis HOM05D003423 ORTHO05D003910 2.0e-42 178.3 215 47.0
Nitab4.5_0002885g0030 Nicotiana tabacum HOM05D003423 ORTHO05D003910 4.4e-42 177.2 220 46.4
QL05p083582 Quercus lobata HOM05D003423 ORTHO05D003910 4.4e-42 177.2 215 47.0
QL05p083734 Quercus lobata HOM05D003423 ORTHO05D003910 4.4e-42 177.2 215 47.0
Rhsim08G0246600 Rhododendron simsii HOM05D003423 ORTHO05D003910 4.4e-42 177.2 215 47.0
SGA_v2.0_scaffold122G33294 Striga asiatica HOM05D003423 ORTHO05D003910 7.4e-42 176.4 215 46.5
Nitab4.5_0001691g0030 Nicotiana tabacum HOM05D003423 ORTHO05D003910 9.7e-42 176.0 220 46.4
SMO361G0751 Selaginella moellendorffii HOM05D003423 ORTHO05D003910 1.3e-41 175.6 235 45.5
PGSC0003DMG400009184 Solanum tuberosum HOM05D003423 ORTHO05D003910 2.2e-41 174.9 227 45.8
PGR102G0515 Punica granatum HOM05D003423 ORTHO05D003910 6.3e-41 173.3 215 45.1
Eucgr.F03997 Eucalyptus grandis HOM05D003423 ORTHO05D003910 1.1e-40 172.6 215 44.7
FvH4_6g37480 Fragaria vesca HOM05D003423 ORTHO05D003910 1.1e-40 172.6 215 46.0
Os06g0191200 Oryza sativa ssp. japonica HOM05D003423 ORTHO05D003910 1.1e-40 172.6 216 48.1
Lj9A540T81 Lonicera japonica HOM05D003423 ORTHO05D003910 3.1e-40 171.0 215 44.2
Pp3c5_3280 Physcomitrium patens HOM05D003423 ORTHO05D003910 3.1e-40 171.0 308 41.2
Sabra08G0005700 Salix brachista HOM05D003423 ORTHO05D003910 3.1e-40 171.0 224 44.6
TWI39G0701 Tripterygium wilfordii HOM05D003423 ORTHO05D003910 4.1e-40 170.6 217 50.2
Manes.15G061600 Manihot esculenta HOM05D003423 ORTHO05D003910 5.3e-40 170.2 216 47.7
CBR_g12763 Chara braunii HOM05D003423 ORTHO05D003910 7.0e-40 169.9 222 46.4
Hma1.2p1_0090F.1_g045620 Hydrangea macrophylla HOM05D003423 ORTHO05D003910 7.0e-40 169.9 222 45.0
Oeu051387.2 Olea europaea HOM05D003423 ORTHO05D003910 9.1e-40 169.5 215 46.0
Potri.008G009700 Populus trichocarpa HOM05D003423 ORTHO05D003910 1.2e-39 169.1 215 45.1
Actinidia33816 Actinidia chinensis HOM05D003423 ORTHO05D003910 1.6e-39 168.7 215 47.4
Lj3g0006153 Lotus japonicus HOM05D003423 ORTHO05D003910 2.6e-39 167.9 196 49.5
MBI16_g46430_MAGBIO Magnolia biondii HOM05D003423 ORTHO05D003910 2.6e-39 167.9 215 44.7
Prupe.3G168300 Prunus persica HOM05D003423 ORTHO05D003910 2.6e-39 167.9 237 42.2
TAR626G1285 Trochodendron aralioides HOM05D003423 ORTHO05D003910 4.5e-39 167.2 242 43.8
VMungo1080G0425 Vigna mungo HOM05D003423 ORTHO05D003910 4.5e-39 167.2 215 44.7
Eucgr.F02068 Eucalyptus grandis HOM05D003423 ORTHO05D003910 5.9e-39 166.8 217 48.8
CiPaw.12G136700 Carya illinoinensis HOM05D003423 ORTHO05D003910 7.7e-39 166.4 275 42.5
Ca_00986_v3 Cicer arietinum L. HOM05D003423 ORTHO05D003910 7.7e-39 166.4 215 46.0
Ca_01000_v3 Cicer arietinum L. HOM05D003423 ORTHO05D003910 7.7e-39 166.4 215 46.0
Atru.chr1.2766 Acer truncatum HOM05D003423 ORTHO05D003910 1.0e-38 166.0 215 43.7
CiPaw.11G202400 Carya illinoinensis HOM05D003423 ORTHO05D003910 1.0e-38 166.0 215 46.5
Mapoly0109s0050 Marchantia polymorpha HOM05D003423 ORTHO05D003910 1.0e-38 166.0 304 39.1
TAR624G0752 Trochodendron aralioides HOM05D003423 ORTHO05D003910 1.7e-38 165.2 219 46.1
Rhsim04G0013800 Rhododendron simsii HOM05D003423 ORTHO05D003910 2.2e-38 164.9 216 47.2
unitig_27.g25148 Utricularia gibba HOM05D003423 ORTHO05D003910 2.2e-38 164.9 220 45.0
Nitab4.5_0000163g0280 Nicotiana tabacum HOM05D003423 ORTHO05D003910 2.9e-38 164.5 219 46.1
FAN09G1601 Fragaria x ananassa HOM05D003423 ORTHO05D003910 3.8e-38 164.1 218 44.5
Nn1g07481 Nelumbo nucifera HOM05D003423 ORTHO05D003910 3.8e-38 164.1 215 45.1
Duzib213G0099 Durio zibethinus HOM05D003423 ORTHO05D003910 5.0e-38 163.7 225 47.6
FAN02G3068 Fragaria x ananassa HOM05D003423 ORTHO05D003910 5.0e-38 163.7 218 44.5
HPP92_018337 Vanilla planifolia HOM05D003423 ORTHO05D003910 5.0e-38 163.7 278 39.9
PSO063G5220 Papaver somniferum HOM05D003423 ORTHO05D003910 6.5e-38 163.3 220 46.4
Manes.03G139900 Manihot esculenta HOM05D003423 ORTHO05D003910 8.5e-38 162.9 216 46.3
CSS0034763 Camellia sinensis var. sinensis HOM05D003423 ORTHO05D003910 1.1e-37 162.5 216 46.8
CSS0038448 Camellia sinensis var. sinensis HOM05D003423 ORTHO05D003910 1.1e-37 162.5 216 46.8
Ciclev10027497m.g Citrus clementina HOM05D003423 ORTHO05D003910 1.5e-37 162.2 252 39.7
MSTRG.14479 Avicennia marina HOM05D003423 ORTHO05D003910 1.9e-37 161.8 219 43.4
EL10Ac7g18155 Beta vulgaris HOM05D003423 ORTHO05D003910 1.9e-37 161.8 250 41.6
FAN14G2430 Fragaria x ananassa HOM05D003423 ORTHO05D003910 1.9e-37 161.8 206 46.6
FAN21G0447 Fragaria x ananassa HOM05D003423 ORTHO05D003910 1.9e-37 161.8 217 50.7
Aa31LG10G260 Aethionema arabicum HOM05D003423 ORTHO05D003910 2.5e-37 161.4 216 45.4
CDE04G0040 Ceratophyllum demersum HOM05D003423 ORTHO05D003910 2.5e-37 161.4 183 49.2
Oeu041432.1 Olea europaea HOM05D003423 ORTHO05D003910 2.5e-37 161.4 219 44.7
RcHm_v2.0_Chr5g0054021 Rosa chinensis HOM05D003423 ORTHO05D003910 2.5e-37 161.4 217 49.3
PGSC0003DMG400029797 Solanum tuberosum HOM05D003423 ORTHO05D003910 2.5e-37 161.4 219 44.7
vmacro09657 Vaccinium macrocarpon HOM05D003423 ORTHO05D003910 2.5e-37 161.4 259 40.9
GSVIVG01014644001 Vitis vinifera HOM05D003423 ORTHO05D003910 2.5e-37 161.4 277 41.2
Dinv10321 Davidia involucrata HOM05D003423 ORTHO05D003910 3.2e-37 161.0 219 45.7
Gohir.A04G002900 Gossypium hirsutum HOM05D003423 ORTHO05D003910 3.2e-37 161.0 225 46.2
Lsat_1_v5_gn_4_89280 Lactuca sativa HOM05D003423 ORTHO05D003910 4.2e-37 160.6 242 41.7
Potri.011G092900 Populus trichocarpa HOM05D003423 ORTHO05D003910 4.2e-37 160.6 216 47.2
ClCG09G021170 Citrullus lanatus HOM05D003423 ORTHO05D003910 7.2e-37 159.8 216 46.3
BraA08t32113Z Brassica rapa HOM05D003423 ORTHO05D003910 9.4e-37 159.5 206 45.1
DCAR_017083 Daucus carota HOM05D003423 ORTHO05D003910 9.4e-37 159.5 216 44.9
FAN05G4329 Fragaria x ananassa HOM05D003423 ORTHO05D003910 9.4e-37 159.5 218 43.1
CANSAT11G1165 Cannabis sativa HOM05D003423 ORTHO05D003910 1.2e-36 159.1 216 44.4
CsaV3_7G018340 Cucumis sativus L. HOM05D003423 ORTHO05D003910 1.2e-36 159.1 216 46.3
Hund01908 Selenicereus undatus HOM05D003423 ORTHO05D003910 1.2e-36 159.1 269 41.6
arahy.Tifrunner.gnm1.ann1.HUB5JH Arachis hypogaea HOM05D003423 ORTHO05D003910 1.6e-36 158.7 202 48.5
FAN11G0659 Fragaria x ananassa HOM05D003423 ORTHO05D003910 1.6e-36 158.7 217 50.2
Atru.chr2.3667 Acer truncatum HOM05D003423 ORTHO05D003910 2.1e-36 158.3 271 41.7
Actinidia37163 Actinidia chinensis HOM05D003423 ORTHO05D003910 2.1e-36 158.3 216 45.8
arahy.Tifrunner.gnm1.ann1.08VBYE Arachis hypogaea HOM05D003423 ORTHO05D003910 2.1e-36 158.3 202 48.5
FvH4_3g29470 Fragaria vesca HOM05D003423 ORTHO05D003910 2.1e-36 158.3 267 44.2
HanXRQChr09g0277351 Helianthus annuus HOM05D003423 ORTHO05D003910 2.1e-36 158.3 204 48.0
ClCG04G000610 Citrullus lanatus HOM05D003423 ORTHO05D003910 2.7e-36 157.9 227 51.5
Aqoxy2G03521 Aquilegia oxysepala HOM05D003423 ORTHO05D003910 3.6e-36 157.5 215 45.6
arahy.Tifrunner.gnm1.ann1.FCEI8S Arachis hypogaea HOM05D003423 ORTHO05D003910 3.6e-36 157.5 202 48.5
Prupe.4G239900 Prunus persica HOM05D003423 ORTHO05D003910 3.6e-36 157.5 217 47.5
MELO3C024918.2 Cucumis melo HOM05D003423 ORTHO05D003910 4.7e-36 157.1 216 45.4
Hund05673 Selenicereus undatus HOM05D003423 ORTHO05D003910 4.7e-36 157.1 273 40.3
ATR0580G345 Amborella trichopoda HOM05D003423 ORTHO05D003910 6.1e-36 156.8 274 39.8
DCAR_007666 Daucus carota HOM05D003423 ORTHO05D003910 6.1e-36 156.8 268 38.1
Gorai.010G207500 Gossypium raimondii HOM05D003423 ORTHO05D003910 6.1e-36 156.8 251 42.6
VMungo0540G0232 Vigna mungo HOM05D003423 ORTHO05D003910 6.1e-36 156.8 184 51.6
TPR.G30741 Trifolium pratense HOM05D003423 ORTHO05D003910 8.0e-36 156.4 217 45.2
MELO3C009034.2 Cucumis melo HOM05D003423 ORTHO05D003910 1.0e-35 156.0 182 48.4
Migut.H01764 Erythranthe guttata HOM05D003423 ORTHO05D003910 1.4e-35 155.6 219 53.4
Hma1.2p1_0036F.1_g022545 Hydrangea macrophylla HOM05D003423 ORTHO05D003910 1.4e-35 155.6 265 43.4
Hma1.2p1_0036F.1_g022550 Hydrangea macrophylla HOM05D003423 ORTHO05D003910 1.4e-35 155.6 265 43.4
Medtr3g058580 Medicago truncatula HOM05D003423 ORTHO05D003910 1.4e-35 155.6 224 43.3
HanXRQChr11g0333391 Helianthus annuus HOM05D003423 ORTHO05D003910 1.8e-35 155.2 223 43.0
MD11G1201700 Malus domestica HOM05D003423 ORTHO05D003910 1.8e-35 155.2 217 47.5
AT1G55915 Arabidopsis thaliana HOM05D003423 ORTHO05D003910 3.0e-35 154.5 216 44.0
CARHR045630 Cardamine hirsuta HOM05D003423 ORTHO05D003910 3.0e-35 154.5 221 42.5
Sed0010386 Sechium edule HOM05D003423 ORTHO05D003910 3.0e-35 154.5 215 42.8
Ca_12436_v3 Cicer arietinum L. HOM05D003423 ORTHO05D003910 4.0e-35 154.1 217 44.2
Gohir.D13G137300 Gossypium hirsutum HOM05D003423 ORTHO05D003910 4.0e-35 154.1 271 41.3
Lalb_Chr15g0081991 Lupinus albus HOM05D003423 ORTHO05D003910 5.2e-35 153.7 217 46.5
Solyc12g015660.2 Solanum lycopersicum HOM05D003423 ORTHO05D003910 5.2e-35 153.7 219 53.0
Sopen12g007570 Solanum pennellii HOM05D003423 ORTHO05D003910 5.2e-35 153.7 219 53.0
Gorai.013G153900 Gossypium raimondii HOM05D003423 ORTHO05D003910 6.7e-35 153.3 271 41.3
QL08p004807 Quercus lobata HOM05D003423 ORTHO05D003910 6.7e-35 153.3 281 39.9
TWI38G0990 Tripterygium wilfordii HOM05D003423 ORTHO05D003910 8.8e-35 152.9 216 44.9
Aqoxy6G02866 Aquilegia oxysepala HOM05D003423 ORTHO05D003910 2.0e-34 151.8 216 42.6
BraA08t32074Z Brassica rapa HOM05D003423 ORTHO05D003910 2.0e-34 151.8 263 41.1
ECA236G2484 Erigeron canadensis HOM05D003423 ORTHO05D003910 2.0e-34 151.8 221 43.4
Lj1A888G39 Lonicera japonica HOM05D003423 ORTHO05D003910 2.0e-34 151.8 219 43.8
Lj6g0015704 Lotus japonicus HOM05D003423 ORTHO05D003910 2.6e-34 151.4 216 43.5
Lsat_1_v5_gn_1_26441 Lactuca sativa HOM05D003423 ORTHO05D003910 5.7e-34 150.2 221 43.4
PSO782G1032 Papaver somniferum HOM05D003423 ORTHO05D003910 7.5e-34 149.8 318 37.7
Haze_09806 Corylus avellana HOM05D003423 ORTHO05D003910 2.8e-33 147.9 216 44.9
Nn3g19300 Nelumbo nucifera HOM05D003423 ORTHO05D003910 4.8e-33 147.1 228 43.0
C03p93330 Brassica napus HOM05D003423 ORTHO05D003910 6.3e-33 146.7 308 38.3
MD09G1157700 Malus domestica HOM05D003423 ORTHO05D003910 6.3e-33 146.7 185 46.5
Sc16g0007990 Simmondsia chinensis HOM05D003423 ORTHO05D003910 6.3e-33 146.7 201 45.3
SGA_v2.0_scaffold42G16002 Striga asiatica HOM05D003423 ORTHO05D003910 6.3e-33 146.7 219 42.5
C03p92860 Brassica napus HOM05D003423 ORTHO05D003910 1.1e-32 146.0 308 38.0
BolC3t21592H Brassica oleracea HOM05D003423 ORTHO05D003910 1.1e-32 146.0 308 38.0
THA.LOC104810286 Tarenaya hassleriana HOM05D003423 ORTHO05D003910 1.1e-32 146.0 215 41.9
FAN25G2240 Fragaria x ananassa HOM05D003423 ORTHO05D003910 3.1e-32 144.4 266 41.7
Glyma.18G078800 Glycine max HOM05D003423 ORTHO05D003910 3.1e-32 144.4 331 37.8
SHI26527 Sapria himalayana HOM05D003423 ORTHO05D003910 3.1e-32 144.4 181 45.3
BolC3t21631H Brassica oleracea HOM05D003423 ORTHO05D003910 4.1e-32 144.1 304 37.5
A08p00550 Brassica napus HOM05D003423 ORTHO05D003910 7.0e-32 143.3 303 38.6
Peaxi162Scf00955g00007 Petunia axillaris HOM05D003423 ORTHO05D003910 9.1e-32 142.9 219 42.0
Thecc.07G016500 Theobroma cacao HOM05D003423 ORTHO05D003910 1.2e-31 142.5 324 37.7
Sp1g41520 Schrenkiella parvula HOM05D003423 ORTHO05D003910 2.7e-31 141.4 343 34.7
Phvul.006G055600 Phaseolus vulgaris HOM05D003423 ORTHO05D003910 3.5e-31 141.0 346 37.0
AL1G64060 Arabidopsis lyrata HOM05D003423 ORTHO05D003910 3.8e-30 137.5 325 34.5
Carub.0001s4451 Capsella rubella HOM05D003423 ORTHO05D003910 3.8e-30 137.5 185 44.3
PRCOL_00000756 Prasinoderma coloniale HOM05D003423 ORTHO05D003910 5.0e-30 137.1 276 45.7
Cc05_g14820 Coffea canephora HOM05D003423 ORTHO05D003910 1.5e-29 135.6 219 41.1
EL10Ac4g07604 Beta vulgaris HOM05D003423 ORTHO05D003910 5.5e-29 133.7 322 37.3
BcaC01g01534 Brassica carinata HOM05D003423 ORTHO05D003910 7.2e-29 133.3 308 37.3
AUR62025667 Chenopodium quinoa HOM05D003423 ORTHO05D003910 7.2e-29 133.3 215 39.5
Zm00001eb374280 Zea mays HOM05D003423 ORTHO05D003910 1.2e-28 132.5 170 46.5
Thhalv10011589m.g Eutrema salsugineum HOM05D003423 ORTHO05D003910 1.6e-28 132.1 154 49.4
MCO09G622 Micromonas commoda HOM05D003423 ORTHO05D003910 1.6e-28 132.1 184 42.9
SEGI_36313 Sequoiadendron giganteum HOM05D003423 ORTHO05D003910 4.7e-28 130.6 114 59.6
Cpa.g.sc12.172 Carica papaya HOM05D003423 ORTHO05D003910 8.0e-28 129.8 179 46.4
Medtr2g105670 Medicago truncatula HOM05D003423 ORTHO05D003910 4.0e-27 127.5 127 52.8
Nitab4.5_0002517g0010 Nicotiana tabacum HOM05D003423 ORTHO05D003910 8.8e-27 126.3 219 39.7
Ah.06g181290 Amaranthus hybridus HOM05D003423 ORTHO05D003910 1.5e-26 125.6 320 34.1
AUR62001338 Chenopodium quinoa HOM05D003423 ORTHO05D003910 2.6e-26 124.8 215 38.1
Aqoxy102s004 Aquilegia oxysepala HOM05D003423 ORTHO05D003910 6.3e-25 120.2 215 37.2
Ciclev10010194m.g Citrus clementina HOM05D003423 ORTHO05D003910 1.4e-24 119.0 165 47.9
AUR62017070 Chenopodium quinoa HOM05D003423 ORTHO05D003910 7.7e-23 113.2 216 38.9
Lj6g0002743 Lotus japonicus HOM05D003423 ORTHO05D003910 3.3e-21 107.8 250 35.6
Cfa022425 Carpinus fangiana HOM05D003423 ORTHO05D003910 7.2e-21 106.7 171 40.9
Potri.010G249400 Populus trichocarpa HOM05D003423 ORTHO05D003910 3.6e-20 104.4 203 37.9
MSTRG.22510 Avicennia marina HOM05D003423 ORTHO05D003910 4.0e-19 100.9 134 45.5
Aqoxy2G00648 Aquilegia oxysepala HOM05D003423 ORTHO05D003910 8.9e-19 99.8 215 36.7
Gohir.A04G133100 Gossypium hirsutum HOM05D003423 ORTHO05D003910 7.5e-18 96.7 92 58.7
Dinv37806 Davidia involucrata HOM05D003423 ORTHO05D003910 1.3e-17 95.9 127 46.5
Actinidia21857 Actinidia chinensis HOM05D003423 ORTHO05D003910 3.7e-17 94.4 127 47.2
AUR62036422 Chenopodium quinoa HOM05D003423 ORTHO05D003910 3.7e-17 94.4 318 32.7
AUR62036428 Chenopodium quinoa HOM05D003423 ORTHO05D003910 8.3e-17 93.2 318 32.7
Sabra10G0194100 Salix brachista HOM05D003423 ORTHO05D003910 1.4e-16 92.4 176 37.5
Psat7g121520 Pisum sativum HOM05D003423 ORTHO05D003910 5.4e-16 90.5 127 43.3
Gohir.D06G176332 Gossypium hirsutum HOM05D003423 ORTHO05D003910 1.0e-14 86.3 99 50.5
Sed0002105 Sechium edule HOM05D003423 ORTHO05D003910 1.0e-14 86.3 127 41.7
Gorai.010G207400 Gossypium raimondii HOM05D003423 ORTHO05D003910 2.3e-14 85.1 100 53.0
Gohir.A06G044200 Gossypium hirsutum HOM05D003423 ORTHO05D003910 3.9e-14 84.3 96 50.0
AUR62028647 Chenopodium quinoa HOM05D003423 ORTHO05D003910 5.2e-11 73.9 217 33.2
Aqoxy6G00167 Aquilegia oxysepala HOM05D003423 ORTHO05D003910 8.9e-11 73.2 117 37.6
MCO07G103 Micromonas commoda HOM05D006530 ORTHO05D008283 7.5e-10 70.1 125 36.8
EL10Ac8g20245 Beta vulgaris HOM05D003423 ORTHO05D003910 8.3e-09 66.6 89 40.4
Cfa025683 Carpinus fangiana HOM05D006530 ORTHO05D008283 1.1e-08 66.2 184 30.4
BcaC06g31883 Brassica carinata HOM05D003423 ORTHO05D003910 1.6e-07 62.4 106 39.6
HPP92_017868 Vanilla planifolia HOM05D003423 ORTHO05D003910 3.5e-07 61.2 158 31.6
SEGI_22543 Sequoiadendron giganteum HOM05D003423 ORTHO05D003910 8.6e-06 56.6 96 40.6


User provided reference genes

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