Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre07.g332800 Chlamydomonas reinhardtii HOM05D004733 ORTHO05D005925 0.0e+00 2508.4 1464 100.0
Pp3c6_25920 Physcomitrium patens HOM05D004733 ORTHO05D005925 5.2e-109 400.6 1158 31.6
CBR_g37736 Chara braunii HOM05D004733 ORTHO05D000048 1.0e-104 386.3 1330 29.3
Mapoly0060s0020 Marchantia polymorpha HOM05D004733 ORTHO05D005925 8.6e-104 383.3 998 32.0
SEGI_35015 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 8.3e-99 366.7 1063 29.4
Manes.02G094400 Manihot esculenta HOM05D004733 ORTHO05D005925 1.7e-91 342.4 1136 28.5
Potri.007G024600 Populus trichocarpa HOM05D004733 ORTHO05D005925 1.3e-88 332.8 1138 28.6
Thhalv10024292m.g Eutrema salsugineum HOM05D004733 ORTHO05D005925 1.7e-88 332.4 1125 28.4
AT1G63810 Arabidopsis thaliana HOM05D004733 ORTHO05D005925 2.3e-88 332.0 1126 28.3
Sed0013525 Sechium edule HOM05D004733 ORTHO05D005925 6.6e-88 330.5 1152 27.5
BolC3t20259H Brassica oleracea HOM05D004733 ORTHO05D005925 5.6e-87 327.4 1132 27.9
CsaV3_6G008550 Cucumis sativus L. HOM05D004733 ORTHO05D005925 1.6e-86 325.9 1152 27.3
MCO15G114 Micromonas commoda HOM05D004733 ORTHO05D005925 2.8e-86 325.1 1033 27.8
Nn5g29624 Nelumbo nucifera HOM05D004733 ORTHO05D005925 1.8e-85 322.4 1129 27.7
MELO3C022270.2 Cucumis melo HOM05D004733 ORTHO05D005925 2.4e-85 322.0 1149 27.0
CsaV3_5G036970 Cucumis sativus L. HOM05D004733 ORTHO05D005925 3.1e-85 321.6 1152 27.1
AL2G11330 Arabidopsis lyrata HOM05D004733 ORTHO05D005925 4.0e-85 321.2 1126 28.1
MSTRG.23523 Avicennia marina HOM05D004733 ORTHO05D005925 8.9e-85 320.1 1126 27.4
EL10Ac6g15557 Beta vulgaris HOM05D004733 ORTHO05D005925 8.9e-85 320.1 1073 28.6
C03p80050 Brassica napus HOM05D004733 ORTHO05D005925 8.9e-85 320.1 1130 27.6
A08p22270 Brassica napus HOM05D004733 ORTHO05D005925 2.6e-84 318.5 1153 27.7
THA.LOC104809497 Tarenaya hassleriana HOM05D004733 ORTHO05D005925 2.6e-84 318.5 1127 27.1
CANSAT78G0304 Cannabis sativa HOM05D004733 ORTHO05D005925 4.4e-84 317.8 1150 27.6
BraA08t34186Z Brassica rapa HOM05D004733 ORTHO05D005925 5.8e-84 317.4 1153 27.6
MBI14_g08060_MAGBIO Magnolia biondii HOM05D004733 ORTHO05D005925 5.8e-84 317.4 1058 28.6
Migut.H00986 Erythranthe guttata HOM05D004733 ORTHO05D005925 1.3e-83 316.2 1153 27.8
AUR62004057 Chenopodium quinoa HOM05D004733 ORTHO05D005925 1.7e-83 315.8 1131 28.6
PSO675G5282 Papaver somniferum HOM05D004733 ORTHO05D005925 1.7e-83 315.8 1039 27.9
Hund16432 Selenicereus undatus HOM05D004733 ORTHO05D005925 2.2e-83 315.5 1158 27.5
MD02G1146900 Malus domestica HOM05D004733 ORTHO05D005925 3.8e-83 314.7 1131 27.7
Sc03g0003000 Simmondsia chinensis HOM05D004733 ORTHO05D005925 3.8e-83 314.7 1155 28.2
Atru.chr3.583 Acer truncatum HOM05D004733 ORTHO05D005925 6.4e-83 313.9 1087 28.0
Sp7g34280 Schrenkiella parvula HOM05D004733 ORTHO05D005925 8.4e-83 313.5 1126 26.9
PSO541G3573 Papaver somniferum HOM05D004733 ORTHO05D005925 1.4e-82 312.8 1041 27.9
Carub.0002s0104 Capsella rubella HOM05D004733 ORTHO05D005925 2.4e-82 312.0 1127 27.3
CARHR047390 Cardamine hirsuta HOM05D004733 ORTHO05D005925 2.4e-82 312.0 1128 27.0
Zm00001eb139270 Zea mays HOM05D004733 ORTHO05D005925 5.4e-82 310.8 1335 26.3
CiPaw.02G018200 Carya illinoinensis HOM05D004733 ORTHO05D005925 9.2e-82 310.1 1137 27.6
FvH4_1g13250 Fragaria vesca HOM05D004733 ORTHO05D005925 4.6e-81 307.8 1148 27.1
ClCG06G002580 Citrullus lanatus HOM05D004733 ORTHO05D005925 6.0e-81 307.4 1152 27.1
Ciclev10024776m.g Citrus clementina HOM05D004733 ORTHO05D005925 1.0e-80 306.6 1129 27.4
Lalb_Chr16g0377811 Lupinus albus HOM05D004733 ORTHO05D005925 3.0e-80 305.1 1124 27.9
Medtr5g020190 Medicago truncatula HOM05D004733 ORTHO05D005925 3.9e-80 304.7 1035 28.4
ATR0665G204 Amborella trichopoda HOM05D004733 ORTHO05D005925 8.7e-80 303.5 1150 27.7
Prupe.7G155300 Prunus persica HOM05D004733 ORTHO05D005925 1.1e-79 303.1 1066 28.4
SalBow2G0826 Salvia bowleyana HOM05D004733 ORTHO05D005925 1.9e-79 302.4 1143 26.9
arahy.Tifrunner.gnm1.ann1.VZ5KK1 Arachis hypogaea HOM05D004733 ORTHO05D005925 4.3e-79 301.2 1129 27.4
Solyc02g085230.3 Solanum lycopersicum HOM05D004733 ORTHO05D005925 5.6e-79 300.8 1108 28.0
RcHm_v2.0_Chr2g0101431 Rosa chinensis HOM05D004733 ORTHO05D005925 7.3e-79 300.4 1153 27.5
Psat2g159520 Pisum sativum HOM05D004733 ORTHO05D005925 9.6e-79 300.1 1054 27.5
arahy.Tifrunner.gnm1.ann1.VB3WEH Arachis hypogaea HOM05D004733 ORTHO05D005925 2.1e-78 298.9 1133 27.4
Ah.03g140900 Amaranthus hybridus HOM05D004733 ORTHO05D005925 2.8e-78 298.5 1131 27.5
AagrBONN_evm.TU.Sc2ySwM_228.918 Anthoceros agrestis HOM05D004733 ORTHO05D005925 2.8e-78 298.5 905 30.7
Lj1g0005862 Lotus japonicus HOM05D004733 ORTHO05D005925 3.6e-78 298.1 1068 27.9
arahy.Tifrunner.gnm1.ann1.6U5FTL Arachis hypogaea HOM05D004733 ORTHO05D005925 6.2e-78 297.4 1127 27.2
Gohir.A11G184100 Gossypium hirsutum HOM05D004733 ORTHO05D005925 6.2e-78 297.4 1068 29.1
Sopen02g029930 Solanum pennellii HOM05D004733 ORTHO05D005925 6.2e-78 297.4 1107 27.8
Cc03_g11520 Coffea canephora HOM05D004733 ORTHO05D005925 8.1e-78 297.0 1124 28.0
Gohir.D11G190600 Gossypium hirsutum HOM05D004733 ORTHO05D005925 8.1e-78 297.0 1068 28.7
Aqoxy6G01122 Aquilegia oxysepala HOM05D004733 ORTHO05D005925 1.8e-77 295.8 1116 25.4
Glyma.01G176400 Glycine max HOM05D004733 ORTHO05D005925 2.4e-77 295.4 1130 26.6
Gorai.007G203100 Gossypium raimondii HOM05D004733 ORTHO05D005925 2.4e-77 295.4 1068 28.6
PGR119G1063 Punica granatum HOM05D004733 ORTHO05D005925 5.3e-77 294.3 1129 27.5
Actinidia36563 Actinidia chinensis HOM05D004733 ORTHO05D005925 6.9e-77 293.9 1138 27.1
FAN19G0915 Fragaria x ananassa HOM05D004733 ORTHO05D005925 9.0e-77 293.5 1148 26.9
AUR62007571 Chenopodium quinoa HOM05D004733 ORTHO05D005925 1.2e-76 293.1 1166 27.8
CSS0026274 Camellia sinensis var. sinensis HOM05D004733 ORTHO05D005925 5.8e-76 290.8 1138 26.6
Glyma.11G068600 Glycine max HOM05D004733 ORTHO05D005925 9.9e-76 290.0 1108 26.6
Duzib187G1802 Durio zibethinus HOM05D004733 ORTHO05D005925 2.2e-75 288.9 1067 28.3
VMungo1215G0507 Vigna mungo HOM05D004733 ORTHO05D005925 2.2e-75 288.9 1148 26.9
GSVIVG01018952001 Vitis vinifera HOM05D004733 ORTHO05D005925 2.2e-75 288.9 1146 26.7
Thecc.01G034700 Theobroma cacao HOM05D004733 ORTHO05D005925 6.4e-75 287.3 1066 28.8
CDE02G4373 Ceratophyllum demersum HOM05D004733 ORTHO05D005925 1.1e-74 286.6 1076 26.8
Sabra07G0021700 Salix brachista HOM05D004733 ORTHO05D005925 1.4e-74 286.2 1170 27.0
Peaxi162Scf00366g00125 Petunia axillaris HOM05D004733 ORTHO05D005925 1.2e-73 283.1 1134 27.4
ECA232G2226 Erigeron canadensis HOM05D004733 ORTHO05D005925 1.0e-72 280.0 1132 26.9
Phvul.002G030700 Phaseolus vulgaris HOM05D004733 ORTHO05D005925 2.3e-72 278.9 1146 26.0
Oeu017201.1 Olea europaea HOM05D004733 ORTHO05D005925 3.0e-72 278.5 1159 26.7
Dinv39990 Davidia involucrata HOM05D004733 ORTHO05D005925 3.9e-72 278.1 1136 27.4
Cfa004311 Carpinus fangiana HOM05D004733 ORTHO05D005925 8.7e-72 276.9 1129 26.8
QL04p047829 Quercus lobata HOM05D004733 ORTHO05D005925 1.5e-71 276.2 1154 26.3
Rhsim02G0060300 Rhododendron simsii HOM05D004733 ORTHO05D005925 3.3e-71 275.0 1217 26.0
Cpa.g.sc6.117 Carica papaya HOM05D004733 ORTHO05D005925 1.3e-70 273.1 1026 28.5
TWI77G0475 Tripterygium wilfordii HOM05D004733 ORTHO05D005925 2.1e-70 272.3 1104 27.3
HanXRQChr09g0261511 Helianthus annuus HOM05D004733 ORTHO05D005925 3.6e-70 271.6 1134 26.9
Nitab4.5_0001385g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 6.2e-70 270.8 1068 27.8
SMO347G0575 Selaginella moellendorffii HOM05D004733 ORTHO05D005925 6.2e-70 270.8 1130 26.8
FAN23G1660 Fragaria x ananassa HOM05D004733 ORTHO05D005925 1.2e-68 266.5 1154 26.2
Nitab4.5_0000178g0060 Nicotiana tabacum HOM05D004733 ORTHO05D005925 1.3e-67 263.1 1063 27.6
SEGI_33720 Sequoiadendron giganteum HOM05D004733 ORTHO05D005925 3.8e-67 261.5 667 31.6
Lj4A201T52 Lonicera japonica HOM05D004733 ORTHO05D005925 7.9e-65 253.8 1059 27.2
Ca_24849_v3 Cicer arietinum L. HOM05D004733 ORTHO05D005925 1.3e-64 253.1 1056 26.0
COL.COLO4_08906 Corchorus olitorius HOM05D004733 ORTHO05D005925 6.7e-64 250.8 1134 26.6
Eucgr.I02440 Eucalyptus grandis HOM05D004733 ORTHO05D005925 3.3e-63 248.4 899 27.9
Hma1.2p1_0789F.1_g218380 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 1.4e-61 243.0 1170 25.6
A05p29760 Brassica napus HOM05D004733 ORTHO05D005925 9.0e-61 240.4 1126 25.9
Lsat_1_v5_gn_4_152020 Lactuca sativa HOM05D004733 ORTHO05D005925 3.4e-60 238.4 1133 25.2
BcaC01g00457 Brassica carinata HOM05D004733 ORTHO05D005925 2.2e-59 235.7 834 27.9
FAN28G2014 Fragaria x ananassa HOM05D004733 ORTHO05D005925 2.5e-58 232.3 1152 24.6
vmacro15553 Vaccinium macrocarpon HOM05D004733 ORTHO05D005925 4.2e-58 231.5 1240 25.1
TAR625G0290 Trochodendron aralioides HOM05D004733 ORTHO05D005925 1.3e-54 219.9 1068 25.1
TPR.G22288 Trifolium pratense HOM05D004733 ORTHO05D005925 8.2e-54 217.2 630 29.5
PRCOL_00003562 Prasinoderma coloniale HOM05D004733 ORTHO05D005925 2.5e-47 195.7 1055 28.0
A05p29530 Brassica napus HOM05D004733 ORTHO05D005925 1.2e-44 186.8 818 26.8
CAN.G3433.1 Capsicum annuum HOM05D004733 ORTHO05D005925 3.2e-42 178.7 662 28.7
CAN.G358.87 Capsicum annuum HOM05D004733 ORTHO05D005925 1.8e-40 172.9 663 28.7
HPP92_009474 Vanilla planifolia HOM05D004733 ORTHO05D005925 7.4e-39 167.5 987 22.7
DCAR_017293 Daucus carota HOM05D004733 ORTHO05D005925 1.8e-37 162.9 835 25.0
SGA_v2.0_scaffold54G19532 Striga asiatica HOM05D004733 ORTHO05D005925 4.5e-36 158.3 753 25.6
Cfa025732 Carpinus fangiana HOM05D004733 ORTHO05D005925 1.7e-35 156.4 1091 23.2
BcaNung05455 Brassica carinata HOM05D004733 ORTHO05D005925 2.5e-34 152.5 643 25.8
MD15G1261100 Malus domestica HOM05D004733 ORTHO05D005925 1.8e-32 146.4 524 27.3
Hma1.2p1_0789F.1_g218390 Hydrangea macrophylla HOM05D004733 ORTHO05D005925 3.0e-32 145.6 634 26.5
QL02p065465 Quercus lobata HOM05D004733 ORTHO05D005925 3.3e-31 142.1 337 32.6
Haze_15084 Corylus avellana HOM05D004733 ORTHO05D005925 2.0e-28 132.9 873 24.3
SHI09115 Sapria himalayana HOM05D004733 ORTHO05D005925 3.5e-28 132.1 717 24.8
Aa31LG3G3780 Aethionema arabicum HOM05D004733 ORTHO05D005925 1.0e-27 130.6 625 24.8
QL06p046231 Quercus lobata HOM05D004733 ORTHO05D005925 1.1e-26 127.1 581 26.7
unitig_21.g20953 Utricularia gibba HOM05D004733 ORTHO05D005925 1.0e-24 120.6 274 33.6
Os12g0166500 Oryza sativa ssp. japonica HOM05D004733 ORTHO05D005925 2.8e-22 112.5 536 26.7
Aa31LG3G3760 Aethionema arabicum HOM05D004733 ORTHO05D005925 1.1e-18 100.5 339 26.5
CAN.G358.91 Capsicum annuum HOM05D004733 ORTHO05D005925 7.2e-18 97.8 376 26.3
AagrBONN_evm.TU.Sc2ySwM_228.917 Anthoceros agrestis HOM05D004733 ORTHO05D005925 1.2e-17 97.1 183 36.1
RcHm_v2.0_Chr2g0101471 Rosa chinensis HOM05D004733 ORTHO05D005925 1.4e-13 83.6 249 29.3
TPR.G8389 Trifolium pratense HOM05D004733 ORTHO05D005925 2.0e-12 79.7 423 25.8
GSVIVG01024291001 Vitis vinifera HOM05D004733 ORTHO05D005925 8.5e-11 74.3 221 29.4
Actinidia12125 Actinidia chinensis HOM05D004733 ORTHO05D005925 1.2e-09 70.5 242 27.3
C07p61800 Brassica napus HOM05D004733 ORTHO05D005925 8.8e-08 64.3 86 46.5
arahy.Tifrunner.gnm1.ann1.VLQ9MW Arachis hypogaea HOM05D004733 ORTHO05D005925 2.6e-07 62.8 167 28.7
Aa31LG3G3770 Aethionema arabicum HOM05D004733 ORTHO05D005925 2.2e-06 59.7 102 39.2


User provided reference genes

Program Settings