Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre07.g332150 Chlamydomonas reinhardtii HOM05D002674 ORTHO05D008041 9.6e-53 209.9 108 100.0
FAN25G1445 Fragaria x ananassa HOM05D002674 ORTHO05D008041 1.0e-09 67.0 81 40.7
FvH4_3g17380 Fragaria vesca HOM05D002674 ORTHO05D008041 2.2e-09 65.9 81 39.5
FAN11G2206 Fragaria x ananassa HOM05D002674 ORTHO05D008041 2.2e-09 65.9 81 39.5
FAN16G1943 Fragaria x ananassa HOM05D002674 ORTHO05D008041 2.2e-09 65.9 81 39.5
FvH4_2g25692 Fragaria vesca HOM05D002674 ORTHO05D008041 2.9e-09 65.5 86 38.4
Dinv19696 Davidia involucrata HOM05D002674 ORTHO05D008041 3.8e-09 65.1 89 39.3
Duzib133G1209 Durio zibethinus HOM05D002674 ORTHO05D007700 5.0e-09 64.7 89 40.4
MD11G1310400 Malus domestica HOM05D002674 ORTHO05D008041 5.0e-09 64.7 80 40.0
FAN21G2416 Fragaria x ananassa HOM05D002674 ORTHO05D008041 6.5e-09 64.3 81 38.3
Mapoly0061s0038 Marchantia polymorpha HOM05D002674 ORTHO05D008041 6.5e-09 64.3 100 37.0
Nn3g21482 Nelumbo nucifera HOM05D002674 ORTHO05D008041 6.5e-09 64.3 92 37.0
Potri.014G129800 Populus trichocarpa HOM05D002674 ORTHO05D008041 6.5e-09 64.3 81 39.5
GSVIVG01028011001 Vitis vinifera HOM05D002674 ORTHO05D008041 6.5e-09 64.3 81 40.7
Haze_04934 Corylus avellana HOM05D002674 ORTHO05D008041 1.1e-08 63.5 89 38.2
Gohir.A08G076000 Gossypium hirsutum HOM05D002674 ORTHO05D008041 1.5e-08 63.2 104 36.5
Gohir.D08G085400 Gossypium hirsutum HOM05D002674 ORTHO05D008041 1.5e-08 63.2 104 37.5
SalBow3G0298 Salvia bowleyana HOM05D002674 ORTHO05D008041 1.5e-08 63.2 94 37.2
Cpa.g.sc9.264 Carica papaya HOM05D002674 ORTHO05D008041 2.5e-08 62.4 94 35.1
Cfa005915 Carpinus fangiana HOM05D002674 ORTHO05D008041 2.5e-08 62.4 89 37.1
Atru.chr5.1150 Acer truncatum HOM05D002674 ORTHO05D008041 3.2e-08 62.0 89 37.1
Atru.chr7.1564 Acer truncatum HOM05D002674 ORTHO05D008041 3.2e-08 62.0 89 37.1
HanXRQChr15g0465661 Helianthus annuus HOM05D002674 ORTHO05D008041 3.2e-08 62.0 81 38.3
Phvul.007G146200 Phaseolus vulgaris HOM05D002674 ORTHO05D008041 3.2e-08 62.0 95 36.8
AagrBONN_evm.TU.Sc2ySwM_362.373 Anthoceros agrestis HOM05D002674 ORTHO05D008041 4.2e-08 61.6 84 39.3
CANSAT25G0502 Cannabis sativa HOM05D002674 ORTHO05D008041 5.5e-08 61.2 89 37.1
Dinv33053 Davidia involucrata HOM05D002674 ORTHO05D007700 5.5e-08 61.2 89 37.1
RcHm_v2.0_Chr6g0293971 Rosa chinensis HOM05D002674 ORTHO05D008041 5.5e-08 61.2 86 36.0
COL.COLO4_23349 Corchorus olitorius HOM05D002674 ORTHO05D008041 7.2e-08 60.8 88 37.5
MBI19_g25355_MAGBIO Magnolia biondii HOM05D002674 ORTHO05D008041 7.2e-08 60.8 81 34.6
PGR044G1069 Punica granatum HOM05D002674 ORTHO05D008041 7.2e-08 60.8 84 36.9
TAR636G2182 Trochodendron aralioides HOM05D002674 ORTHO05D008041 7.2e-08 60.8 89 37.1
Sabra02G0154500 Salix brachista HOM05D002674 ORTHO05D008041 1.2e-07 60.1 77 39.0
unitig_61.g26303 Utricularia gibba HOM05D002674 ORTHO05D008041 1.2e-07 60.1 81 39.5
MELO3C017957.2 Cucumis melo HOM05D002674 ORTHO05D008041 1.6e-07 59.7 80 36.2
VMungo0720G1979 Vigna mungo HOM05D002674 ORTHO05D008041 1.6e-07 59.7 95 34.7
Ah.15g093210 Amaranthus hybridus HOM05D002674 ORTHO05D008041 2.1e-07 59.3 80 37.5
EL10Ac7g17468 Beta vulgaris HOM05D002674 ORTHO05D008041 2.1e-07 59.3 78 34.6
Psat6g166360 Pisum sativum HOM05D002674 ORTHO05D008041 2.1e-07 59.3 89 36.0
Oeu048338.1 Olea europaea HOM05D002674 ORTHO05D008041 2.7e-07 58.9 91 36.3
SEGI_38702 Sequoiadendron giganteum HOM05D002674 ORTHO05D008041 2.7e-07 58.9 88 34.1
MSTRG.21632 Avicennia marina HOM05D002674 ORTHO05D008041 3.6e-07 58.5 79 39.2
BcaC02g10314 Brassica carinata HOM05D002674 ORTHO05D008041 3.6e-07 58.5 89 38.2
A04p00510 Brassica napus HOM05D002674 ORTHO05D008041 3.6e-07 58.5 89 38.2
BolC4t24576H Brassica oleracea HOM05D002674 ORTHO05D008041 3.6e-07 58.5 89 38.2
BraA04t15771Z Brassica rapa HOM05D002674 ORTHO05D008041 3.6e-07 58.5 89 38.2
ECA247G1692 Erigeron canadensis HOM05D002674 ORTHO05D008041 3.6e-07 58.5 89 36.0
QL12p028510 Quercus lobata HOM05D002674 ORTHO05D008041 3.6e-07 58.5 89 34.8
ATR0796G030 Amborella trichopoda HOM05D002674 ORTHO05D008041 4.7e-07 58.2 83 34.9
Aqoxy5G00753 Aquilegia oxysepala HOM05D002674 ORTHO05D008041 4.7e-07 58.2 81 35.8
Ca_10338_v3 Cicer arietinum L. HOM05D002674 ORTHO05D008041 4.7e-07 58.2 95 33.7
ClCG10G010910 Citrullus lanatus HOM05D002674 ORTHO05D008041 4.7e-07 58.2 80 37.5
Ciclev10022953m.g Citrus clementina HOM05D002674 ORTHO05D008041 4.7e-07 58.2 104 34.6
Haze_04957 Corylus avellana HOM05D002674 ORTHO05D008041 4.7e-07 58.2 75 40.0
PGR119G0614 Punica granatum HOM05D002674 ORTHO05D008041 4.7e-07 58.2 89 37.1
TWI14G1447 Tripterygium wilfordii HOM05D002674 ORTHO05D008041 4.7e-07 58.2 81 37.0
arahy.Tifrunner.gnm1.ann1.9NAT9F Arachis hypogaea HOM05D002674 ORTHO05D008041 6.1e-07 57.8 89 37.1
arahy.Tifrunner.gnm1.ann1.UV7MYU Arachis hypogaea HOM05D002674 ORTHO05D008041 6.1e-07 57.8 89 37.1
CDE12G0521 Ceratophyllum demersum HOM05D002674 ORTHO05D008041 6.1e-07 57.8 91 35.2
AUR62033146 Chenopodium quinoa HOM05D002674 ORTHO05D008041 6.1e-07 57.8 80 32.5
SalBow3G1515 Salvia bowleyana HOM05D002674 ORTHO05D008041 6.1e-07 57.8 84 36.9
AUR62008625 Chenopodium quinoa HOM05D002674 ORTHO05D008041 8.0e-07 57.4 80 32.5
CsaV3_4G000790 Cucumis sativus L. HOM05D002674 ORTHO05D008041 8.0e-07 57.4 80 36.2
Eucgr.H01115 Eucalyptus grandis HOM05D002674 ORTHO05D008041 8.0e-07 57.4 89 37.1
Manes.01G218700 Manihot esculenta HOM05D002674 ORTHO05D008041 8.0e-07 57.4 77 37.7
MCO07G465 Micromonas commoda HOM05D002674 ORTHO05D008041 8.0e-07 57.4 85 40.0
Sp5g00710 Schrenkiella parvula HOM05D002674 ORTHO05D008041 8.0e-07 57.4 89 38.2
Actinidia32214 Actinidia chinensis HOM05D002674 ORTHO05D008041 1.0e-06 57.0 81 34.6
Aa31LG10G16570 Aethionema arabicum HOM05D002674 ORTHO05D008041 1.0e-06 57.0 89 38.2
BcaC07g42733 Brassica carinata HOM05D002674 ORTHO05D008041 1.0e-06 57.0 89 38.2
C04p30420 Brassica napus HOM05D002674 ORTHO05D008041 1.0e-06 57.0 89 38.2
CiPaw.07G108500 Carya illinoinensis HOM05D002674 ORTHO05D008041 1.0e-06 57.0 94 35.1
Migut.D00216 Erythranthe guttata HOM05D002674 ORTHO05D008041 1.0e-06 57.0 81 39.5
MD03G1287900 Malus domestica HOM05D002674 ORTHO05D008041 1.0e-06 57.0 94 31.9
Prupe.8G261100 Prunus persica HOM05D002674 ORTHO05D008041 1.0e-06 57.0 86 36.0
Sed0019690 Sechium edule HOM05D002674 ORTHO05D008041 1.0e-06 57.0 88 35.2
AL5G45590 Arabidopsis lyrata HOM05D002674 ORTHO05D008041 1.4e-06 56.6 89 37.1
AT3G62810 Arabidopsis thaliana HOM05D002674 ORTHO05D008041 1.4e-06 56.6 89 38.2
Carub.0005s2947 Capsella rubella HOM05D002674 ORTHO05D008041 1.4e-06 56.6 89 37.1
CARHR173080 Cardamine hirsuta HOM05D002674 ORTHO05D008041 1.4e-06 56.6 89 38.2
Thhalv10006327m.g Eutrema salsugineum HOM05D002674 ORTHO05D008041 1.4e-06 56.6 89 38.2
Lj5g0008305 Lotus japonicus HOM05D002674 ORTHO05D008041 1.4e-06 56.6 89 34.8
Thecc.01G300000 Theobroma cacao HOM05D002674 ORTHO05D008041 1.4e-06 56.6 88 36.4
Zm00001eb346590 Zea mays HOM05D002674 ORTHO05D008041 1.4e-06 56.6 89 39.3
CSS0018179 Camellia sinensis var. sinensis HOM05D002674 ORTHO05D008041 1.8e-06 56.2 89 34.8
CAN.G472.1 Capsicum annuum HOM05D002674 ORTHO05D008041 1.8e-06 56.2 89 32.6
Gorai.004G089900 Gossypium raimondii HOM05D002674 ORTHO05D008041 1.8e-06 56.2 75 40.0
Medtr1g088550 Medicago truncatula HOM05D002674 ORTHO05D008041 1.8e-06 56.2 89 33.7
Hund18156 Selenicereus undatus HOM05D002674 ORTHO05D008041 1.8e-06 56.2 85 34.1
SGA_v2.0_scaffold2G01395 Striga asiatica HOM05D002674 ORTHO05D008041 1.8e-06 56.2 89 37.1
TPR.G34008 Trifolium pratense HOM05D002674 ORTHO05D008041 1.8e-06 56.2 81 37.0
Pp3c9_7930 Physcomitrium patens HOM05D002674 ORTHO05D008041 2.3e-06 55.8 89 32.6
BcaB02g08097 Brassica carinata HOM05D002674 ORTHO05D008041 3.0e-06 55.5 89 34.8
Cc01_g20820 Coffea canephora HOM05D002674 ORTHO05D008041 3.0e-06 55.5 89 34.8
Nitab4.5_0001879g0010 Nicotiana tabacum HOM05D002674 ORTHO05D008041 3.0e-06 55.5 89 32.6
Nitab4.5_0008207g0030 Nicotiana tabacum HOM05D002674 ORTHO05D008041 3.0e-06 55.5 89 32.6
Solyc09g075100.3 Solanum lycopersicum HOM05D002674 ORTHO05D008041 3.0e-06 55.5 89 32.6
Sopen09g029920 Solanum pennellii HOM05D002674 ORTHO05D008041 3.0e-06 55.5 89 32.6
PGSC0003DMG400011376 Solanum tuberosum HOM05D002674 ORTHO05D008041 3.0e-06 55.5 89 32.6
Glyma.10G018500 Glycine max HOM05D002674 ORTHO05D008041 4.0e-06 55.1 89 33.7
Peaxi162Scf00001g00445 Petunia axillaris HOM05D002674 ORTHO05D008041 4.0e-06 55.1 89 32.6
Rhsim13G0010400 Rhododendron simsii HOM05D002674 ORTHO05D008041 4.0e-06 55.1 76 38.2
DCAR_002831 Daucus carota HOM05D000067 ORTHO05D001807 5.2e-06 54.7 75 37.3
Lsat_1_v5_gn_9_5640 Lactuca sativa HOM05D002674 ORTHO05D008643 6.7e-06 54.3 75 37.3
TWI23G1311 Tripterygium wilfordii HOM05D002674 ORTHO05D008041 6.7e-06 54.3 89 33.7


User provided reference genes

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