Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre07.g326350 Chlamydomonas reinhardtii HOM05D006195 ORTHO05D007710 1.5e-242 842.4 423 100.0
Pp3c6_22670 Physcomitrium patens HOM05D006195 ORTHO05D007710 1.0e-89 334.7 379 45.4
AagrBONN_evm.TU.Sc2ySwM_344.4192 Anthoceros agrestis HOM05D006195 ORTHO05D007710 1.3e-89 334.3 352 49.1
FAN11G1039 Fragaria x ananassa HOM05D006195 ORTHO05D007710 2.3e-89 333.6 375 46.4
RcHm_v2.0_Chr5g0006371 Rosa chinensis HOM05D006195 ORTHO05D007710 6.6e-89 332.0 411 43.8
FvH4_3g04030 Fragaria vesca HOM05D006195 ORTHO05D007710 1.9e-88 330.5 411 44.5
Os03g0738000 Oryza sativa ssp. japonica HOM05D006195 ORTHO05D007710 1.9e-88 330.5 371 46.6
PSO675G1294 Papaver somniferum HOM05D006195 ORTHO05D007710 3.3e-88 329.7 413 43.8
MBI14_g15641_MAGBIO Magnolia biondii HOM05D006195 ORTHO05D007710 1.2e-87 327.8 366 47.0
HanXRQChr14g0437281 Helianthus annuus HOM05D006195 ORTHO05D007710 2.8e-87 326.6 397 43.6
ATR0693G097 Amborella trichopoda HOM05D006195 ORTHO05D007710 3.6e-87 326.2 388 45.1
Aqoxy1G02740 Aquilegia oxysepala HOM05D006195 ORTHO05D007710 1.0e-86 324.7 364 45.6
Eucgr.E03701 Eucalyptus grandis HOM05D006195 ORTHO05D007710 1.0e-86 324.7 390 44.9
QL04p018330 Quercus lobata HOM05D006195 ORTHO05D007710 1.8e-86 323.9 376 44.9
AT4G21520 Arabidopsis thaliana HOM05D006195 ORTHO05D007710 2.3e-86 323.6 352 47.7
CiPaw.09G158100 Carya illinoinensis HOM05D006195 ORTHO05D007710 2.3e-86 323.6 374 45.5
Sc17g0006620 Simmondsia chinensis HOM05D006195 ORTHO05D007710 2.3e-86 323.6 383 46.0
Atru.chr10.2006 Acer truncatum HOM05D006195 ORTHO05D007710 3.1e-86 323.2 392 44.4
Zm00001eb056530 Zea mays HOM05D006195 ORTHO05D007710 4.0e-86 322.8 372 46.5
Gohir.A05G165600 Gossypium hirsutum HOM05D006195 ORTHO05D007710 5.2e-86 322.4 370 46.5
Gohir.D05G168600 Gossypium hirsutum HOM05D006195 ORTHO05D007710 5.2e-86 322.4 370 46.5
Sed0022279 Sechium edule HOM05D006195 ORTHO05D007710 5.2e-86 322.4 394 43.4
TAR629G3096 Trochodendron aralioides HOM05D006195 ORTHO05D007710 5.2e-86 322.4 370 45.9
MD10G1303200 Malus domestica HOM05D006195 ORTHO05D007710 6.8e-86 322.0 375 45.3
Lsat_1_v5_gn_7_19641 Lactuca sativa HOM05D006195 ORTHO05D007710 8.9e-86 321.6 401 42.6
Gorai.009G173800 Gossypium raimondii HOM05D006195 ORTHO05D007710 1.2e-85 321.2 370 46.2
AL7G32530 Arabidopsis lyrata HOM05D006195 ORTHO05D007710 1.5e-85 320.9 352 47.4
ClCG03G005530 Citrullus lanatus HOM05D006195 ORTHO05D007710 1.5e-85 320.9 413 42.6
Aa31LG6G3540 Aethionema arabicum HOM05D006195 ORTHO05D007710 2.0e-85 320.5 392 44.6
EL10Ac8g20527 Beta vulgaris HOM05D006195 ORTHO05D007710 2.0e-85 320.5 370 44.9
THA.LOC104806275 Tarenaya hassleriana HOM05D006195 ORTHO05D007710 2.0e-85 320.5 362 45.9
Thecc.06G199000 Theobroma cacao HOM05D006195 ORTHO05D007710 2.6e-85 320.1 397 43.3
CBR_g41455 Chara braunii HOM05D006195 ORTHO05D007710 3.4e-85 319.7 402 43.3
Rhsim02G0120000 Rhododendron simsii HOM05D006195 ORTHO05D007710 3.4e-85 319.7 405 42.5
Sp7g19630 Schrenkiella parvula HOM05D006195 ORTHO05D007710 3.4e-85 319.7 366 45.6
SGA_v2.0_scaffold7G03951 Striga asiatica HOM05D006195 ORTHO05D007710 3.4e-85 319.7 431 41.3
BcaNung02791 Brassica carinata HOM05D006195 ORTHO05D007710 4.4e-85 319.3 374 45.5
CsaV3_1G011800 Cucumis sativus L. HOM05D006195 ORTHO05D007710 4.4e-85 319.3 362 45.6
Carub.0007s1990 Capsella rubella HOM05D006195 ORTHO05D007710 5.8e-85 318.9 348 48.0
CARHR228180 Cardamine hirsuta HOM05D006195 ORTHO05D007710 5.8e-85 318.9 398 43.5
Cpa.g.sc27.120 Carica papaya HOM05D006195 ORTHO05D007710 5.8e-85 318.9 391 43.7
Migut.I00196 Erythranthe guttata HOM05D006195 ORTHO05D007710 7.5e-85 318.5 375 44.3
Migut.M01211 Erythranthe guttata HOM05D006195 ORTHO05D007710 7.5e-85 318.5 402 43.0
TWI38G0511 Tripterygium wilfordii HOM05D006195 ORTHO05D007710 9.8e-85 318.2 379 44.3
GSVIVG01003194001 Vitis vinifera HOM05D006195 ORTHO05D007710 9.8e-85 318.2 406 42.1
Ciclev10015313m.g Citrus clementina HOM05D006195 ORTHO05D007710 2.9e-84 316.6 370 44.9
ECA236G2696 Erigeron canadensis HOM05D006195 ORTHO05D007710 2.9e-84 316.6 358 45.8
Thhalv10025271m.g Eutrema salsugineum HOM05D006195 ORTHO05D007710 3.7e-84 316.2 362 46.4
C01p15450 Brassica napus HOM05D006195 ORTHO05D007710 4.9e-84 315.8 406 42.1
BolC1t01499H Brassica oleracea HOM05D006195 ORTHO05D007710 4.9e-84 315.8 406 42.1
arahy.Tifrunner.gnm1.ann1.IWY5CJ Arachis hypogaea HOM05D006195 ORTHO05D007710 6.4e-84 315.5 393 43.5
Mapoly0082s0056 Marchantia polymorpha HOM05D006195 ORTHO05D007710 6.4e-84 315.5 396 42.2
COL.COLO4_31584 Corchorus olitorius HOM05D006195 ORTHO05D007710 8.3e-84 315.1 412 43.0
Actinidia24060 Actinidia chinensis HOM05D006195 ORTHO05D007710 1.1e-83 314.7 384 43.0
PGR042G1193 Punica granatum HOM05D006195 ORTHO05D007710 1.1e-83 314.7 417 42.0
Prupe.4G036600 Prunus persica HOM05D006195 ORTHO05D007710 1.4e-83 314.3 395 43.0
arahy.Tifrunner.gnm1.ann1.HDHM3Z Arachis hypogaea HOM05D006195 ORTHO05D007710 1.9e-83 313.9 393 43.3
Potri.011G043000 Populus trichocarpa HOM05D006195 ORTHO05D007710 1.9e-83 313.9 363 44.9
CANSAT56G3748 Cannabis sativa HOM05D006195 ORTHO05D007710 2.4e-83 313.5 371 45.6
Sopen02g023920 Solanum pennellii HOM05D006195 ORTHO05D007710 3.2e-83 313.2 415 41.4
A01p12830 Brassica napus HOM05D006195 ORTHO05D007710 4.1e-83 312.8 403 43.2
BraA01t01227Z Brassica rapa HOM05D006195 ORTHO05D007710 4.1e-83 312.8 377 44.6
SalBow8G2471 Salvia bowleyana HOM05D006195 ORTHO05D007710 4.1e-83 312.8 414 42.8
vmacro15867 Vaccinium macrocarpon HOM05D006195 ORTHO05D007710 5.4e-83 312.4 375 42.4
MSTRG.8639 Avicennia marina HOM05D006195 ORTHO05D007710 9.2e-83 311.6 396 42.2
MD05G1325300 Malus domestica HOM05D006195 ORTHO05D007710 9.2e-83 311.6 413 41.9
CBR_g20417 Chara braunii HOM05D006195 ORTHO05D007710 1.2e-82 311.2 351 45.0
Oeu038214.1 Olea europaea HOM05D006195 ORTHO05D007710 2.7e-82 310.1 409 41.8
Lalb_Chr09g0327371 Lupinus albus HOM05D006195 ORTHO05D007710 3.5e-82 309.7 366 44.5
Lj2A280G38 Lonicera japonica HOM05D006195 ORTHO05D007710 6.0e-82 308.9 427 41.2
Solyc02g079110.3 Solanum lycopersicum HOM05D006195 ORTHO05D007710 6.0e-82 308.9 415 41.0
SMO137G0351 Selaginella moellendorffii HOM05D006195 ORTHO05D007710 7.8e-82 308.5 377 43.5
PGSC0003DMG400022408 Solanum tuberosum HOM05D006195 ORTHO05D007710 1.3e-81 307.8 415 41.0
Medtr4g091080 Medicago truncatula HOM05D006195 ORTHO05D007710 6.6e-81 305.4 370 44.3
Cc02_g12450 Coffea canephora HOM05D006195 ORTHO05D007710 8.6e-81 305.1 398 43.0
Ca_18483_v3 Cicer arietinum L. HOM05D006195 ORTHO05D007710 2.5e-80 303.5 402 41.8
Haze_06571 Corylus avellana HOM05D006195 ORTHO05D007710 4.3e-80 302.8 364 43.7
Phvul.002G222200 Phaseolus vulgaris HOM05D006195 ORTHO05D007710 1.2e-79 301.2 409 40.8
CSS0049192 Camellia sinensis var. sinensis HOM05D006195 ORTHO05D007710 1.6e-79 300.8 357 44.3
Sabra11G0029600 Salix brachista HOM05D006195 ORTHO05D001726 1.6e-79 300.8 341 45.5
VMungo0251G2515 Vigna mungo HOM05D006195 ORTHO05D007710 2.1e-79 300.4 379 42.5
Glyma.07G190200 Glycine max HOM05D006195 ORTHO05D007710 2.8e-79 300.1 372 43.5
Peaxi162Scf00355g00914 Petunia axillaris HOM05D006195 ORTHO05D007710 3.6e-79 299.7 383 42.3
Ah.14g088920 Amaranthus hybridus HOM05D006195 ORTHO05D007710 2.3e-78 297.0 392 42.3
Cfa000355 Carpinus fangiana HOM05D006195 ORTHO05D007710 2.3e-78 297.0 364 43.7
TPR.G32422 Trifolium pratense HOM05D006195 ORTHO05D007710 2.3e-78 297.0 335 46.0
Manes.17G039200 Manihot esculenta HOM05D006195 ORTHO05D007710 8.9e-78 295.0 353 44.8
CDE11G0466 Ceratophyllum demersum HOM05D006195 ORTHO05D007710 2.6e-77 293.5 337 45.4
FAN25G3765 Fragaria x ananassa HOM05D006195 ORTHO05D007710 2.6e-77 293.5 426 41.8
DCAR_008069 Daucus carota HOM05D006195 ORTHO05D007710 3.4e-77 293.1 390 40.5
Lj4g0017156 Lotus japonicus HOM05D006195 ORTHO05D007710 1.3e-76 291.2 370 42.2
Nitab4.5_0009994g0040 Nicotiana tabacum HOM05D006195 ORTHO05D007710 3.7e-76 289.7 431 38.7
FAN21G3429 Fragaria x ananassa HOM05D006195 ORTHO05D007710 6.4e-76 288.9 420 41.0
Duzib235G1322 Durio zibethinus HOM05D006195 ORTHO05D007710 3.0e-73 280.0 409 38.4
AUR62014719 Chenopodium quinoa HOM05D006195 ORTHO05D007710 1.1e-72 278.1 340 45.0
MCO07G204 Micromonas commoda HOM05D006195 ORTHO05D007710 5.6e-72 275.8 388 42.3
MELO3C002557.2 Cucumis melo HOM05D006195 ORTHO05D007710 1.1e-70 271.6 365 41.6
AUR62016899 Chenopodium quinoa HOM05D006195 ORTHO05D007710 2.8e-63 246.9 410 38.0
Hund23609 Selenicereus undatus HOM05D006195 ORTHO05D007710 2.6e-61 240.4 270 47.0
Nitab4.5_0000190g0110 Nicotiana tabacum HOM05D006195 ORTHO05D007710 4.4e-61 239.6 278 44.6
Psat7g108560 Pisum sativum HOM05D006195 ORTHO05D007710 5.4e-59 232.6 321 39.6
SMO116G0485 Selaginella moellendorffii HOM05D006195 ORTHO05D007710 2.7e-58 230.3 267 46.8
MBI14_g13652_MAGBIO Magnolia biondii HOM05D006195 ORTHO05D007710 6.0e-58 229.2 370 38.1
Dinv40483 Davidia involucrata HOM05D006195 ORTHO05D007710 7.8e-58 228.8 318 40.3
unitig_37.g12337 Utricularia gibba HOM05D006195 ORTHO05D007710 2.6e-53 213.8 396 33.8
PRCOL_00004057 Prasinoderma coloniale HOM05D006195 ORTHO05D007710 1.8e-46 191.0 326 39.3
Eucgr.L01396 Eucalyptus grandis HOM05D006195 ORTHO05D007710 1.6e-42 177.9 266 39.8
HPP92_018057 Vanilla planifolia HOM05D006195 ORTHO05D007710 3.0e-41 173.7 333 36.3
TPR.G37128 Trifolium pratense HOM05D006195 ORTHO05D007710 5.1e-41 172.9 177 49.2
Potri.004G034600 Populus trichocarpa HOM05D006195 ORTHO05D007710 6.2e-39 166.0 272 36.0
SalBow6G2099 Salvia bowleyana HOM05D006195 ORTHO05D007710 1.5e-37 161.4 168 47.0
SalBow6G4337 Salvia bowleyana HOM05D006195 ORTHO05D007710 1.5e-37 161.4 168 47.0
SalBow1G5137 Salvia bowleyana HOM05D006195 ORTHO05D007710 7.4e-32 142.5 146 47.3
Nn1g03899 Nelumbo nucifera HOM05D006195 ORTHO05D007710 2.1e-31 141.0 396 30.6
SalBow4G2205 Salvia bowleyana HOM05D006195 ORTHO05D007710 8.7e-25 119.0 98 55.1
GSVIVG01003189001 Vitis vinifera HOM05D006195 ORTHO05D007710 2.2e-23 114.4 99 50.5
SalBow1G7985 Salvia bowleyana HOM05D006195 ORTHO05D007710 3.6e-18 97.1 110 43.6
Nitab4.5_0003834g0010 Nicotiana tabacum HOM05D006195 ORTHO05D007710 1.4e-17 95.1 73 56.2
Manes.10G084901 Manihot esculenta HOM05D006195 ORTHO05D007710 2.3e-17 94.4 127 40.9
CSS0050458 Camellia sinensis var. sinensis HOM05D000911 ORTHO05D007710 3.0e-17 94.0 90 46.7
SEGI_17138 Sequoiadendron giganteum HOM05D006195 ORTHO05D007710 6.7e-17 92.8 82 51.2
Dinv18994 Davidia involucrata HOM05D006195 ORTHO05D007710 8.8e-17 92.4 84 51.2
SHI02125 Sapria himalayana HOM05D006195 ORTHO05D007710 6.9e-14 82.8 101 43.6
Thecc.06G199100 Theobroma cacao HOM05D006195 ORTHO05D007710 5.9e-13 79.7 70 55.7
SHI48938 Sapria himalayana HOM05D006195 ORTHO05D007710 2.2e-12 77.8 71 54.9
Medtr1g097140 Medicago truncatula HOM05D003913 ORTHO05D004803 4.8e-07 60.1 234 24.8
AL117U10020 Arabidopsis lyrata HOM05D064442 ORTHO05D011622 7.0e-06 56.2 32 71.9


User provided reference genes

Program Settings