Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre07.g325735 Chlamydomonas reinhardtii HOM05D005946 ORTHO05D007340 7.3e-33 143.3 71 100.0
Os05g0251500 Oryza sativa ssp. japonica HOM05D005946 ORTHO05D007340 1.5e-22 109.0 71 70.4
MD06G1111800 Malus domestica HOM05D005946 ORTHO05D007340 2.2e-21 105.1 71 67.6
Prupe.5G124600 Prunus persica HOM05D005946 ORTHO05D007340 2.2e-21 105.1 71 69.0
Pp3s128_20 Physcomitrium patens HOM05D005946 ORTHO05D007340 2.9e-21 104.8 71 69.0
FvH4_5g11580 Fragaria vesca HOM05D005946 ORTHO05D007340 3.7e-21 104.4 71 69.0
SEGI_28367 Sequoiadendron giganteum HOM05D005946 ORTHO05D007340 3.7e-21 104.4 71 66.2
unitig_747.g21988 Utricularia gibba HOM05D005946 ORTHO05D007340 4.9e-21 104.0 71 67.6
Lalb_Chr05g0223941 Lupinus albus HOM05D005946 ORTHO05D007340 6.4e-21 103.6 71 70.4
MD14G1133000 Malus domestica HOM05D005946 ORTHO05D007340 8.3e-21 103.2 71 67.6
AL6G31720 Arabidopsis lyrata HOM05D005946 ORTHO05D007340 1.1e-20 102.8 71 67.6
AT5G20165 Arabidopsis thaliana HOM05D005946 ORTHO05D007340 1.1e-20 102.8 71 67.6
Carub.0006s1856 Capsella rubella HOM05D005946 ORTHO05D007340 1.1e-20 102.8 71 67.6
Lj4g0023384 Lotus japonicus HOM05D005946 ORTHO05D007340 1.1e-20 102.8 71 67.6
Mapoly0008s0042 Marchantia polymorpha HOM05D005946 ORTHO05D007340 1.9e-20 102.1 71 66.2
Nn3g18946 Nelumbo nucifera HOM05D005946 ORTHO05D007340 1.9e-20 102.1 69 69.6
Aa31LG10G8610 Aethionema arabicum HOM05D005946 ORTHO05D007340 2.4e-20 101.7 71 66.2
Eucgr.B03471 Eucalyptus grandis HOM05D005946 ORTHO05D007340 2.4e-20 101.7 71 66.2
Solyc06g068780.3 Solanum lycopersicum HOM05D005946 ORTHO05D007340 2.4e-20 101.7 71 66.2
Sopen06g026060 Solanum pennellii HOM05D005946 ORTHO05D007340 2.4e-20 101.7 71 66.2
PGSC0003DMG400025576 Solanum tuberosum HOM05D005946 ORTHO05D007340 2.4e-20 101.7 71 66.2
EL10Ac6g13474 Beta vulgaris HOM05D005946 ORTHO05D007340 3.2e-20 101.3 71 64.8
CARHR192660 Cardamine hirsuta HOM05D005946 ORTHO05D007340 3.2e-20 101.3 71 66.2
CDE10G0705 Ceratophyllum demersum HOM05D005946 ORTHO05D007340 3.2e-20 101.3 69 68.1
Thhalv10015210m.g Eutrema salsugineum HOM05D005946 ORTHO05D007340 3.2e-20 101.3 71 66.2
Sp6g24240 Schrenkiella parvula HOM05D005946 ORTHO05D007340 3.2e-20 101.3 71 66.2
THA.LOC109116592 Tarenaya hassleriana HOM05D005946 ORTHO05D007340 3.2e-20 101.3 71 66.2
Ciclev10033263m.g Citrus clementina HOM05D005946 ORTHO05D007340 4.1e-20 100.9 71 64.8
SalBow5G0243 Salvia bowleyana HOM05D005946 ORTHO05D007340 4.1e-20 100.9 71 66.2
SalBow5G1014 Salvia bowleyana HOM05D005946 ORTHO05D007340 4.1e-20 100.9 71 66.2
Actinidia27305 Actinidia chinensis HOM05D005946 ORTHO05D007340 5.4e-20 100.5 69 66.7
CSS0024427 Camellia sinensis var. sinensis HOM05D005946 ORTHO05D007340 5.4e-20 100.5 71 64.8
CANSAT21G2474 Cannabis sativa HOM05D005946 ORTHO05D007340 5.4e-20 100.5 71 64.8
Cc00_g13530 Coffea canephora HOM05D005946 ORTHO05D007340 5.4e-20 100.5 71 66.2
Migut.B01726 Erythranthe guttata HOM05D005946 ORTHO05D007340 5.4e-20 100.5 71 66.2
Solyc03g118140.3 Solanum lycopersicum HOM05D005946 ORTHO05D007340 5.4e-20 100.5 71 64.8
Sopen03g037060 Solanum pennellii HOM05D005946 ORTHO05D007340 5.4e-20 100.5 71 64.8
A03p09890 Brassica napus HOM05D005946 ORTHO05D007340 7.0e-20 100.1 71 64.8
FvH4_4g23990 Fragaria vesca HOM05D005946 ORTHO05D007340 7.0e-20 100.1 69 68.1
Lsat_1_v5_gn_6_8840 Lactuca sativa HOM05D005946 ORTHO05D007340 7.0e-20 100.1 71 64.8
MBI07_g24770_MAGBIO Magnolia biondii HOM05D005946 ORTHO05D007340 7.0e-20 100.1 71 66.2
Nitab4.5_0001841g0040 Nicotiana tabacum HOM05D005946 ORTHO05D007340 7.0e-20 100.1 70 65.7
Nitab4.5_0008858g0060 Nicotiana tabacum HOM05D005946 ORTHO05D007340 7.0e-20 100.1 70 65.7
CAN.G1089.18 Capsicum annuum HOM05D005946 ORTHO05D007340 9.2e-20 99.8 70 65.7
Duzib251G0400 Durio zibethinus HOM05D005946 ORTHO05D007340 9.2e-20 99.8 71 64.8
Gohir.A03G127300 Gossypium hirsutum HOM05D005946 ORTHO05D007340 9.2e-20 99.8 71 64.8
Gorai.005G169000 Gossypium raimondii HOM05D005946 ORTHO05D007340 9.2e-20 99.8 71 64.8
Lsat_1_v5_gn_3_12801 Lactuca sativa HOM05D005946 ORTHO05D007340 9.2e-20 99.8 71 63.4
PSO063G0123 Papaver somniferum HOM05D005946 ORTHO05D007340 9.2e-20 99.8 71 66.2
PSO170G6765 Papaver somniferum HOM05D005946 ORTHO05D007340 9.2e-20 99.8 71 66.2
Rhsim07G0080600 Rhododendron simsii HOM05D005946 ORTHO05D007340 9.2e-20 99.8 71 64.8
Thecc.02G276900 Theobroma cacao HOM05D005946 ORTHO05D007340 9.2e-20 99.8 71 64.8
Migut.N01429 Erythranthe guttata HOM05D005946 ORTHO05D007340 1.2e-19 99.4 71 64.8
Glyma.11G249100 Glycine max HOM05D005946 ORTHO05D007340 1.2e-19 99.4 71 64.8
Gohir.D02G150700 Gossypium hirsutum HOM05D005946 ORTHO05D007340 1.2e-19 99.4 71 64.8
HanXRQChr07g0190741 Helianthus annuus HOM05D005946 ORTHO05D007340 1.2e-19 99.4 71 64.8
Manes.12G013300 Manihot esculenta HOM05D005946 ORTHO05D007340 1.2e-19 99.4 71 64.8
Manes.13G017850 Manihot esculenta HOM05D005946 ORTHO05D007340 1.2e-19 99.4 71 64.8
PGR004G0564 Punica granatum HOM05D005946 ORTHO05D007340 1.2e-19 99.4 71 64.8
Rhsim12G0028200 Rhododendron simsii HOM05D005946 ORTHO05D007340 1.2e-19 99.4 71 64.8
TAR374G1140 Trochodendron aralioides HOM05D005946 ORTHO05D007340 1.2e-19 99.4 71 64.8
vmacro01071 Vaccinium macrocarpon HOM05D005946 ORTHO05D007340 1.2e-19 99.4 71 64.8
CAN.G843.5 Capsicum annuum HOM05D005946 ORTHO05D007340 1.6e-19 99.0 70 64.3
CiPaw.05G112200 Carya illinoinensis HOM05D005946 ORTHO05D007340 1.6e-19 99.0 71 63.4
CDE10G0420 Ceratophyllum demersum HOM05D005946 ORTHO05D007340 1.6e-19 99.0 65 70.8
Sed0027475 Sechium edule HOM05D005946 ORTHO05D007340 1.6e-19 99.0 71 63.4
TWI14G1045 Tripterygium wilfordii HOM05D005946 ORTHO05D007340 1.6e-19 99.0 71 63.4
TWI36G1530 Tripterygium wilfordii HOM05D005946 ORTHO05D007340 1.6e-19 99.0 71 63.4
A10p19740 Brassica napus HOM05D005946 ORTHO05D007340 2.1e-19 98.6 70 64.3
C09p56030 Brassica napus HOM05D005946 ORTHO05D007340 2.1e-19 98.6 70 64.3
BolC3t13619H Brassica oleracea HOM05D005946 ORTHO05D007340 2.1e-19 98.6 70 64.3
BolC9t58470H Brassica oleracea HOM05D005946 ORTHO05D007340 2.1e-19 98.6 70 64.3
BraA03t10302Z Brassica rapa HOM05D005946 ORTHO05D007340 2.1e-19 98.6 70 64.3
BraA10t44050Z Brassica rapa HOM05D005946 ORTHO05D007340 2.1e-19 98.6 70 64.3
Duzib248G1204 Durio zibethinus HOM05D005946 ORTHO05D007340 2.1e-19 98.6 71 63.4
ECA246G0405 Erigeron canadensis HOM05D005946 ORTHO05D007340 2.1e-19 98.6 71 63.4
Gorai.002G192200 Gossypium raimondii HOM05D005946 ORTHO05D007340 2.1e-19 98.6 71 63.4
HanXRQChr17g0534681 Helianthus annuus HOM05D005946 ORTHO05D007340 2.1e-19 98.6 71 63.4
Lalb_Chr09g0332191 Lupinus albus HOM05D005946 ORTHO05D007340 2.1e-19 98.6 71 67.6
TWI36G1309 Tripterygium wilfordii HOM05D005946 ORTHO05D007340 2.1e-19 98.6 71 63.4
RcHm_v2.0_Chr4g0430651 Rosa chinensis HOM05D005946 ORTHO05D007340 2.7e-19 98.2 69 68.1
Dinv14819 Davidia involucrata HOM05D005946 ORTHO05D007340 3.5e-19 97.8 71 63.4
Phvul.001G260400 Phaseolus vulgaris HOM05D005946 ORTHO05D007340 3.5e-19 97.8 71 63.4
MSTRG.28215 Avicennia marina HOM05D005946 ORTHO05D007340 4.6e-19 97.4 71 63.4
Potri.008G176801 Populus trichocarpa HOM05D005946 ORTHO05D007340 4.6e-19 97.4 71 63.4
Potri.010G058300 Populus trichocarpa HOM05D005946 ORTHO05D007340 4.6e-19 97.4 71 63.4
Os02g0299600 Oryza sativa ssp. japonica HOM05D005946 ORTHO05D007340 6.0e-19 97.1 71 63.4
SalBow3G2240 Salvia bowleyana HOM05D005946 ORTHO05D007340 6.0e-19 97.1 71 64.8
CiPaw.06G100600 Carya illinoinensis HOM05D005946 ORTHO05D007340 7.8e-19 96.7 71 62.0
PGR102G2803 Punica granatum HOM05D005946 ORTHO05D007340 1.3e-18 95.9 71 60.6
TPR.G21803 Trifolium pratense HOM05D005946 ORTHO05D007340 1.3e-18 95.9 71 62.0
Zm00001eb237180 Zea mays HOM05D005946 ORTHO05D007340 1.3e-18 95.9 70 64.3
arahy.Tifrunner.gnm1.ann1.55451G Arachis hypogaea HOM05D005946 ORTHO05D007340 2.3e-18 95.1 70 61.4
AagrBONN_evm.TU.Sc2ySwM_228.3656 Anthoceros agrestis HOM05D005946 ORTHO05D007340 3.9e-18 94.4 71 59.2
Medtr3g085600 Medicago truncatula HOM05D005946 ORTHO05D007340 3.9e-18 94.4 71 60.6
Psat7g023880 Pisum sativum HOM05D005946 ORTHO05D007340 6.6e-18 93.6 71 63.4
vmacro14062 Vaccinium macrocarpon HOM05D005946 ORTHO05D007340 1.9e-17 92.0 62 67.7
unitig_0.g1509 Utricularia gibba HOM05D005946 ORTHO05D007340 5.6e-17 90.5 71 60.6
THA.LOC104799646 Tarenaya hassleriana HOM05D005946 ORTHO05D007340 9.5e-17 89.7 90 52.2
MCO08G327 Micromonas commoda HOM05D005946 ORTHO05D007340 1.5e-14 82.4 62 62.9
arahy.Tifrunner.gnm1.ann1.XCNA8V Arachis hypogaea HOM05D005946 ORTHO05D007340 9.9e-14 79.7 99 43.4
PRCOL_00003875 Prasinoderma coloniale HOM05D005946 ORTHO05D007340 3.7e-13 77.8 71 56.3
C03p11470 Brassica napus HOM05D005946 ORTHO05D007340 6.4e-13 77.0 56 64.3
FAN07G2898 Fragaria x ananassa HOM05D005946 ORTHO05D007340 1.9e-12 75.5 62 61.3
Peaxi162Scf00314g00635 Petunia axillaris HOM05D005946 ORTHO05D007340 3.2e-12 74.7 50 70.0
Actinidia22739 Actinidia chinensis HOM05D005946 ORTHO05D007340 1.6e-11 72.4 50 68.0
SGA_v2.0_scaffold11G05656 Striga asiatica HOM05D000612 ORTHO05D000461 1.6e-11 72.4 49 69.4
Glyma.18G008200 Glycine max HOM05D005946 ORTHO05D007340 3.5e-11 71.2 49 67.3
FAN12G4044 Fragaria x ananassa HOM05D005946 ORTHO05D007340 6.0e-11 70.5 48 70.8
FAN17G0158 Fragaria x ananassa HOM05D005946 ORTHO05D007340 6.0e-11 70.5 53 66.0
CsaV3_6G032330 Cucumis sativus L. HOM05D003413 ORTHO05D004197 7.8e-11 70.1 53 60.4
FvH4_3g12470 Fragaria vesca HOM05D005946 ORTHO05D045642 7.8e-11 70.1 67 47.8
RcHm_v2.0_Chr5g0020411 Rosa chinensis HOM05D005946 ORTHO05D007340 1.3e-10 69.3 69 49.3
ATR0955G005 Amborella trichopoda HOM05D005946 ORTHO05D007340 1.7e-10 68.9 47 68.1
MELO3C030289.2 Cucumis melo HOM05D005946 ORTHO05D007340 3.0e-10 68.2 48 64.6
TPR.G37229 Trifolium pratense HOM05D005946 ORTHO05D007340 3.3e-09 64.7 51 60.8
Sabra08G0134600 Salix brachista HOM05D005946 ORTHO05D007340 5.6e-09 63.9 145 32.4
Nn1g00299 Nelumbo nucifera HOM05D005946 ORTHO05D007340 7.3e-09 63.5 42 61.9
HPP92_000512 Vanilla planifolia HOM05D005946 ORTHO05D007340 4.7e-08 60.8 36 69.4
Dinv16088 Davidia involucrata HOM05D005946 ORTHO05D007340 1.1e-07 59.7 37 64.9
Sed0005468 Sechium edule HOM05D005946 ORTHO05D007340 2.6e-06 55.1 38 60.5
Nitab4.5_0005774g0040 Nicotiana tabacum HOM05D005946 ORTHO05D007340 3.4e-06 54.7 34 64.7
RcHm_v2.0_Chr7g0186171 Rosa chinensis HOM05D005946 ORTHO05D007340 7.6e-06 53.5 43 62.8
SHI17703 Sapria himalayana HOM05D005946 ORTHO05D007340 9.9e-06 53.1 39 64.1


User provided reference genes

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