Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre07.g325722 Chlamydomonas reinhardtii HOM05D001889 ORTHO05D001853 1.9e-195 686.0 457 100.0
MCO10G200 Micromonas commoda HOM05D001889 ORTHO05D001853 2.2e-13 81.3 134 34.3
PRCOL_00005157 Prasinoderma coloniale HOM05D001889 ORTHO05D001853 9.2e-12 75.9 118 37.3
SalBow1G7974 Salvia bowleyana HOM05D001889 ORTHO05D001853 1.7e-10 71.6 65 49.2
Aqoxy7G00073 Aquilegia oxysepala HOM05D001889 ORTHO05D001853 1.9e-09 68.2 65 44.6
MSTRG.26916 Avicennia marina HOM05D001889 ORTHO05D001853 1.9e-09 68.2 65 46.2
PSO135G1027 Papaver somniferum HOM05D001889 ORTHO05D001853 1.9e-09 68.2 65 43.1
Zm00001eb155390 Zea mays HOM05D001889 ORTHO05D001853 1.9e-09 68.2 63 52.4
Cfa025138 Carpinus fangiana HOM05D001889 ORTHO05D001853 3.3e-09 67.4 111 37.8
Sed0013045 Sechium edule HOM05D001889 ORTHO05D001853 3.3e-09 67.4 81 40.7
Mapoly0004s0058 Marchantia polymorpha HOM05D001889 ORTHO05D001853 4.3e-09 67.0 74 47.3
Migut.A00620 Erythranthe guttata HOM05D001889 ORTHO05D001853 5.6e-09 66.6 65 43.1
unitig_748.g7694 Utricularia gibba HOM05D001889 ORTHO05D001853 5.6e-09 66.6 65 46.2
GSVIVG01019561001 Vitis vinifera HOM05D001889 ORTHO05D001853 5.6e-09 66.6 65 43.1
Zm00001eb361130 Zea mays HOM05D001889 ORTHO05D001853 5.6e-09 66.6 63 50.8
Glyma.19G256500 Glycine max HOM05D001889 ORTHO05D001853 7.3e-09 66.2 65 41.5
SEGI_18499 Sequoiadendron giganteum HOM05D001889 ORTHO05D001853 7.3e-09 66.2 65 43.1
Manes.02G008100 Manihot esculenta HOM05D001889 ORTHO05D001853 9.5e-09 65.9 65 44.6
Nitab4.5_0000798g0110 Nicotiana tabacum HOM05D001889 ORTHO05D001853 9.5e-09 65.9 65 46.2
Cfa003792 Carpinus fangiana HOM05D001889 ORTHO05D001853 1.2e-08 65.5 65 44.6
CBR_g19202 Chara braunii HOM05D001889 ORTHO05D001853 1.2e-08 65.5 55 52.7
Ca_17466_v3 Cicer arietinum L. HOM05D001889 ORTHO05D001853 1.2e-08 65.5 65 41.5
Haze_15668 Corylus avellana HOM05D001889 ORTHO05D001853 1.2e-08 65.5 65 44.6
CSS0024595 Camellia sinensis var. sinensis HOM05D001889 ORTHO05D001853 1.6e-08 65.1 65 41.5
AUR62019863 Chenopodium quinoa HOM05D001889 ORTHO05D001853 1.6e-08 65.1 62 43.5
Lalb_Chr15g0076301 Lupinus albus HOM05D001889 ORTHO05D001853 1.6e-08 65.1 65 46.2
AUR62010864 Chenopodium quinoa HOM05D001889 ORTHO05D001853 2.1e-08 64.7 62 43.5
Psat7g024960 Pisum sativum HOM05D001889 ORTHO05D001853 2.1e-08 64.7 65 40.0
Nitab4.5_0008496g0020 Nicotiana tabacum HOM05D001889 ORTHO05D001853 2.8e-08 64.3 65 44.6
SMO353G0044 Selaginella moellendorffii HOM05D001889 ORTHO05D001853 2.8e-08 64.3 75 44.0
Sc22g0004890 Simmondsia chinensis HOM05D001889 ORTHO05D001853 2.8e-08 64.3 65 43.1
SGA_v2.0_scaffold305G47995 Striga asiatica HOM05D001889 ORTHO05D001853 2.8e-08 64.3 65 43.1
Thecc.03G300800 Theobroma cacao HOM05D001889 ORTHO05D001853 2.8e-08 64.3 65 44.6
arahy.Tifrunner.gnm1.ann1.JQ1PN1 Arachis hypogaea HOM05D001889 ORTHO05D001853 3.6e-08 63.9 148 29.1
EL10Ac5g12940 Beta vulgaris HOM05D001889 ORTHO05D001853 3.6e-08 63.9 65 41.5
ECA246G2653 Erigeron canadensis HOM05D001889 ORTHO05D001853 3.6e-08 63.9 65 43.1
Solyc08g082580.3 Solanum lycopersicum HOM05D001889 ORTHO05D001853 3.6e-08 63.9 65 43.1
Sopen08g030830 Solanum pennellii HOM05D001889 ORTHO05D001853 3.6e-08 63.9 65 43.1
THA.LOC104806442 Tarenaya hassleriana HOM05D001889 ORTHO05D001853 3.6e-08 63.9 65 41.5
Duzib068G1189 Durio zibethinus HOM05D001889 ORTHO05D001853 4.7e-08 63.5 65 43.1
Glyma.03G258000 Glycine max HOM05D001889 ORTHO05D001853 4.7e-08 63.5 65 40.0
Pp3c27_5970 Physcomitrium patens HOM05D001889 ORTHO05D001853 4.7e-08 63.5 66 43.9
QL04p060477 Quercus lobata HOM05D001889 ORTHO05D001853 4.7e-08 63.5 65 43.1
TPR.G3382 Trifolium pratense HOM05D001889 ORTHO05D001853 4.7e-08 63.5 65 41.5
Aa31LG9G11200 Aethionema arabicum HOM05D001889 ORTHO05D001853 6.1e-08 63.2 65 41.5
A03p29220 Brassica napus HOM05D001889 ORTHO05D001853 6.1e-08 63.2 65 41.5
BraA03t12117Z Brassica rapa HOM05D001889 ORTHO05D001853 6.1e-08 63.2 65 41.5
COL.COLO4_06276 Corchorus olitorius HOM05D001889 ORTHO05D001853 6.1e-08 63.2 65 41.5
Medtr8g099650 Medicago truncatula HOM05D001889 ORTHO05D001853 6.1e-08 63.2 65 41.5
PSO063G0572 Papaver somniferum HOM05D001889 ORTHO05D001853 6.1e-08 63.2 65 40.0
PGSC0003DMG400012264 Solanum tuberosum HOM05D001889 ORTHO05D001853 6.1e-08 63.2 65 43.1
TAR629G1262 Trochodendron aralioides HOM05D001889 ORTHO05D001853 6.1e-08 63.2 65 38.5
Glyma.08G024200 Glycine max HOM05D001889 ORTHO05D001853 8.0e-08 62.8 65 40.0
Gohir.D03G084300 Gossypium hirsutum HOM05D001889 ORTHO05D001853 8.0e-08 62.8 65 40.0
Gorai.003G078300 Gossypium raimondii HOM05D001889 ORTHO05D001853 8.0e-08 62.8 65 40.0
Lj1g0012362 Lotus japonicus HOM05D001889 ORTHO05D001853 8.0e-08 62.8 65 40.0
Oeu055033.2 Olea europaea HOM05D001889 ORTHO05D001853 8.0e-08 62.8 63 41.3
Carub.0006s2966 Capsella rubella HOM05D001889 ORTHO05D001853 1.0e-07 62.4 65 41.5
HanXRQChr17g0534971 Helianthus annuus HOM05D001889 ORTHO05D001853 1.0e-07 62.4 62 43.5
Prupe.5G122900 Prunus persica HOM05D001889 ORTHO05D001853 1.0e-07 62.4 65 43.1
Rhsim02G0246500 Rhododendron simsii HOM05D001889 ORTHO05D001853 1.0e-07 62.4 65 38.5
VMungo0540G1992 Vigna mungo HOM05D001889 ORTHO05D001853 1.0e-07 62.4 65 43.1
Aqoxy5G02360 Aquilegia oxysepala HOM05D001889 ORTHO05D001853 1.4e-07 62.0 51 52.9
AL6G45010 Arabidopsis lyrata HOM05D001889 ORTHO05D001853 1.4e-07 62.0 65 41.5
arahy.Tifrunner.gnm1.ann1.QJF382 Arachis hypogaea HOM05D001889 ORTHO05D001853 1.4e-07 62.0 148 29.7
Cfa011982 Carpinus fangiana HOM05D001889 ORTHO05D001853 1.4e-07 62.0 65 41.5
Ca_09513_v3 Cicer arietinum L. HOM05D001889 ORTHO05D001853 1.4e-07 62.0 66 40.9
Ca_30063_v3 Cicer arietinum L. HOM05D001889 ORTHO05D001853 1.4e-07 62.0 66 40.9
Gohir.A02G099400 Gossypium hirsutum HOM05D001889 ORTHO05D001853 1.4e-07 62.0 65 40.0
Peaxi162Scf00074g00634 Petunia axillaris HOM05D001889 ORTHO05D001853 1.4e-07 62.0 64 43.8
Atru.chr9.1927 Acer truncatum HOM05D001889 ORTHO05D009239 1.8e-07 61.6 65 40.0
ATR0602G135 Amborella trichopoda HOM05D001889 ORTHO05D001853 1.8e-07 61.6 62 40.3
BcaB01g02728 Brassica carinata HOM05D001889 ORTHO05D001853 1.8e-07 61.6 65 40.0
CiPaw.11G119000 Carya illinoinensis HOM05D001889 ORTHO05D001853 1.8e-07 61.6 65 40.0
MD06G1110000 Malus domestica HOM05D001889 ORTHO05D001853 1.8e-07 61.6 65 43.1
MD14G1131000 Malus domestica HOM05D001889 ORTHO05D001853 1.8e-07 61.6 65 43.1
AT4G10920 Arabidopsis thaliana HOM05D001889 ORTHO05D001853 2.3e-07 61.2 65 41.5
Thhalv10029021m.g Eutrema salsugineum HOM05D001889 ORTHO05D001853 2.3e-07 61.2 65 40.0
Glyma.05G218100 Glycine max HOM05D001889 ORTHO05D001853 2.3e-07 61.2 65 38.5
Phvul.002G300000 Phaseolus vulgaris HOM05D001889 ORTHO05D001853 2.3e-07 61.2 65 40.0
Prupe.2G189900 Prunus persica HOM05D001889 ORTHO05D001853 2.3e-07 61.2 65 41.5
Sp6g06580 Schrenkiella parvula HOM05D001889 ORTHO05D001853 2.3e-07 61.2 65 40.0
BcaC01g04652 Brassica carinata HOM05D001889 ORTHO05D001853 3.1e-07 60.8 65 40.0
BolC3t15839H Brassica oleracea HOM05D001889 ORTHO05D001853 3.1e-07 60.8 65 40.0
CARHR255690 Cardamine hirsuta HOM05D001889 ORTHO05D001853 3.1e-07 60.8 65 40.0
Haze_09091 Corylus avellana HOM05D001889 ORTHO05D001853 3.1e-07 60.8 65 40.0
Cpa.g.sc634.3 Carica papaya HOM05D001889 ORTHO05D001853 4.0e-07 60.5 65 40.0
CsaV3_4G006740 Cucumis sativus L. HOM05D001889 ORTHO05D001853 4.0e-07 60.5 65 40.0
Lalb_Chr09g0332241 Lupinus albus HOM05D001889 ORTHO05D001853 4.0e-07 60.5 65 38.5
Ciclev10020119m.g Citrus clementina HOM05D001889 ORTHO05D001853 5.2e-07 60.1 61 39.3
Nitab4.5_0000258g0190 Nicotiana tabacum HOM05D001889 ORTHO05D001853 5.2e-07 60.1 65 36.9
Potri.002G171900 Populus trichocarpa HOM05D001889 ORTHO05D001853 5.2e-07 60.1 78 34.6
BcaB08g37223 Brassica carinata HOM05D001889 ORTHO05D001853 6.8e-07 59.7 110 36.4
Ciclev10023952m.g Citrus clementina HOM05D001889 ORTHO05D001853 6.8e-07 59.7 65 40.0
Cc08_g16290 Coffea canephora HOM05D001889 ORTHO05D001853 6.8e-07 59.7 65 40.0
Gorai.007G066500 Gossypium raimondii HOM05D001889 ORTHO05D001853 6.8e-07 59.7 106 36.8
Hma1.2p1_0440F.1_g153470 Hydrangea macrophylla HOM05D001889 ORTHO05D001853 6.8e-07 59.7 65 36.9
QL02p030019 Quercus lobata HOM05D001889 ORTHO05D001853 6.8e-07 59.7 65 36.9
Sabra02G0140800 Salix brachista HOM05D001889 ORTHO05D001853 6.8e-07 59.7 78 33.3
TPR.G4688 Trifolium pratense HOM05D001889 ORTHO05D001853 6.8e-07 59.7 65 41.5
arahy.Tifrunner.gnm1.ann1.18SJMB Arachis hypogaea HOM05D001889 ORTHO05D001853 8.9e-07 59.3 65 36.9
arahy.Tifrunner.gnm1.ann1.VRDQ1B Arachis hypogaea HOM05D001889 ORTHO05D001853 8.9e-07 59.3 65 36.9
C03p35280 Brassica napus HOM05D001889 ORTHO05D001853 8.9e-07 59.3 65 38.5
CANSAT56G4277 Cannabis sativa HOM05D001889 ORTHO05D001853 8.9e-07 59.3 73 35.6
ClCG07G011480 Citrullus lanatus HOM05D001889 ORTHO05D001853 1.2e-06 58.9 65 38.5
FvH4_5g04940 Fragaria vesca HOM05D001889 ORTHO05D001853 1.2e-06 58.9 65 40.0
FvH4_7g16761 Fragaria vesca HOM05D001889 ORTHO05D001853 1.2e-06 58.9 66 37.9
FAN10G4194 Fragaria x ananassa HOM05D001889 ORTHO05D001853 1.2e-06 58.9 66 37.9
FAN13G2042 Fragaria x ananassa HOM05D001889 ORTHO05D001853 1.2e-06 58.9 65 40.0
FAN18G0531 Fragaria x ananassa HOM05D001889 ORTHO05D001853 1.2e-06 58.9 65 40.0
FAN18G4029 Fragaria x ananassa HOM05D001889 ORTHO05D001853 1.2e-06 58.9 65 40.0
Gohir.D11G061700 Gossypium hirsutum HOM05D001889 ORTHO05D001853 1.2e-06 58.9 106 36.8
Lj4g0003743 Lotus japonicus HOM05D001889 ORTHO05D001853 1.2e-06 58.9 65 36.9
RcHm_v2.0_Chr7g0194131 Rosa chinensis HOM05D001889 ORTHO05D001853 1.2e-06 58.9 65 40.0
VMungo0251G0223 Vigna mungo HOM05D001889 ORTHO05D001853 1.2e-06 58.9 65 38.5
A10p27960 Brassica napus HOM05D001889 ORTHO05D001853 1.5e-06 58.5 77 42.9
C09p68070 Brassica napus HOM05D001889 ORTHO05D001853 2.0e-06 58.2 77 42.9
C09p68100 Brassica napus HOM05D001889 ORTHO05D001853 2.0e-06 58.2 77 42.9
CANSAT21G0525 Cannabis sativa HOM05D001889 ORTHO05D001853 2.0e-06 58.2 65 36.9
Sed0020938 Sechium edule HOM05D001889 ORTHO05D001853 2.0e-06 58.2 65 38.5
CDE10G1213 Ceratophyllum demersum HOM05D001889 ORTHO05D001853 2.6e-06 57.8 171 31.0
Lsat_1_v5_gn_5_69420 Lactuca sativa HOM05D001889 ORTHO05D001853 2.6e-06 57.8 65 41.5
Gohir.A11G057500 Gossypium hirsutum HOM05D001889 ORTHO05D001853 3.4e-06 57.4 104 36.5
Atru.chr5.680 Acer truncatum HOM05D001889 ORTHO05D001853 4.4e-06 57.0 65 40.0
Ah.06g191040 Amaranthus hybridus HOM05D001889 ORTHO05D001853 4.4e-06 57.0 76 40.8
CsaV3_3G007990 Cucumis sativus L. HOM05D001889 ORTHO05D001853 4.4e-06 57.0 61 42.6
AagrBONN_evm.TU.Sc2ySwM_344.3748 Anthoceros agrestis HOM05D001889 ORTHO05D001853 5.8e-06 56.6 60 45.0
CARHR204180 Cardamine hirsuta HOM05D001889 ORTHO05D001853 5.8e-06 56.6 77 40.3
Eucgr.D01760 Eucalyptus grandis HOM05D001889 ORTHO05D001853 5.8e-06 56.6 62 41.9
Eucgr.I00122 Eucalyptus grandis HOM05D001889 ORTHO05D001853 5.8e-06 56.6 60 46.7
C09p68130 Brassica napus HOM05D001889 ORTHO05D001853 7.5e-06 56.2 76 42.1
HanXRQChr15g0469041 Helianthus annuus HOM05D001889 ORTHO05D001853 7.5e-06 56.2 62 41.9
PSO528G0001 Papaver somniferum HOM05D001889 ORTHO05D001853 7.5e-06 56.2 64 43.8
PGR119G2499 Punica granatum HOM05D001889 ORTHO05D001853 7.5e-06 56.2 49 49.0
TPR.G20603 Trifolium pratense HOM05D001889 ORTHO05D001853 7.5e-06 56.2 51 47.1
TWI31G0409 Tripterygium wilfordii HOM05D001889 ORTHO05D001853 7.5e-06 56.2 50 48.0
TWI31G0820 Tripterygium wilfordii HOM05D001889 ORTHO05D001853 7.5e-06 56.2 50 48.0
Actinidia27561 Actinidia chinensis HOM05D001889 ORTHO05D001853 9.8e-06 55.8 65 36.9
AL6G19640 Arabidopsis lyrata HOM05D001889 ORTHO05D001853 9.8e-06 55.8 77 42.9
MBI03_g28481_MAGBIO Magnolia biondii HOM05D001889 ORTHO05D001853 9.8e-06 55.8 118 33.9
Nitab4.5_0000188g0350 Nicotiana tabacum HOM05D001889 ORTHO05D001853 9.8e-06 55.8 50 48.0
Nitab4.5_0001310g0060 Nicotiana tabacum HOM05D001889 ORTHO05D001853 9.8e-06 55.8 50 48.0
Nitab4.5_0004506g0040 Nicotiana tabacum HOM05D001889 ORTHO05D001853 9.8e-06 55.8 65 33.8
TWI81G0658 Tripterygium wilfordii HOM05D001889 ORTHO05D001853 9.8e-06 55.8 50 50.0


User provided reference genes

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