Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre07.g325721 Chlamydomonas reinhardtii HOM05D007396 ORTHO05D009228 7.5e-260 900.6 684 100.0
CBR_g41808 Chara braunii HOM05D007396 ORTHO05D009228 6.6e-22 110.2 183 38.3
Gohir.A02G117900 Gossypium hirsutum HOM05D007396 ORTHO05D009228 1.4e-16 92.4 324 25.6
HanXRQChr06g0173121 Helianthus annuus HOM05D007396 ORTHO05D009228 1.8e-16 92.0 177 33.3
Thhalv10009697m.g Eutrema salsugineum HOM05D007396 ORTHO05D009228 1.2e-15 89.4 329 26.1
Gohir.D03G058600 Gossypium hirsutum HOM05D007396 ORTHO05D009228 1.2e-15 89.4 325 25.2
Carub.0001s1651 Capsella rubella HOM05D007396 ORTHO05D009228 2.0e-15 88.6 329 25.5
Gorai.003G062400 Gossypium raimondii HOM05D007396 ORTHO05D009228 2.0e-15 88.6 325 25.2
Cpa.g.sc176.25 Carica papaya HOM05D007396 ORTHO05D009228 2.7e-15 88.2 266 28.6
Pp3c5_8210 Physcomitrium patens HOM05D007396 ORTHO05D009228 2.7e-15 88.2 176 35.2
THA.LOC104812337 Tarenaya hassleriana HOM05D007396 ORTHO05D009228 2.7e-15 88.2 323 27.9
Manes.06G178800 Manihot esculenta HOM05D007396 ORTHO05D009228 5.9e-15 87.0 178 34.8
HPP92_017379 Vanilla planifolia HOM05D007396 ORTHO05D009228 7.8e-15 86.7 348 25.0
CARHR017230 Cardamine hirsuta HOM05D007396 ORTHO05D009228 1.0e-14 86.3 327 24.8
Sp1g14920 Schrenkiella parvula HOM05D007396 ORTHO05D009228 1.3e-14 85.9 329 26.4
BcaB03g13031 Brassica carinata HOM05D007396 ORTHO05D009228 5.0e-14 84.0 333 24.9
AL1G28940 Arabidopsis lyrata HOM05D007396 ORTHO05D009228 6.6e-14 83.6 329 25.2
AUR62001321 Chenopodium quinoa HOM05D007396 ORTHO05D009228 6.6e-14 83.6 320 25.3
Nitab4.5_0005451g0030 Nicotiana tabacum HOM05D007396 ORTHO05D009228 1.9e-13 82.0 260 25.4
Solyc03g113510.2 Solanum lycopersicum HOM05D007396 ORTHO05D009228 1.9e-13 82.0 323 25.7
TWI12G0468 Tripterygium wilfordii HOM05D007396 ORTHO05D009228 1.9e-13 82.0 185 30.8
CiPaw.01G206900 Carya illinoinensis HOM05D007396 ORTHO05D009228 2.5e-13 81.6 264 25.8
CAN.G999.17 Capsicum annuum HOM05D007396 ORTHO05D009228 3.3e-13 81.3 325 25.5
AUR62025704 Chenopodium quinoa HOM05D007396 ORTHO05D009228 3.3e-13 81.3 326 24.8
Os02g0140800 Oryza sativa ssp. japonica HOM05D007396 ORTHO05D009228 3.3e-13 81.3 343 25.9
CSS0031419 Camellia sinensis var. sinensis HOM05D007396 ORTHO05D009228 4.3e-13 80.9 175 29.1
ECA233G2395 Erigeron canadensis HOM05D007396 ORTHO05D009228 4.3e-13 80.9 343 24.8
FAN14G5522 Fragaria x ananassa HOM05D000163 ORTHO05D009228 4.3e-13 80.9 115 37.4
SEGI_29070 Sequoiadendron giganteum HOM05D007396 ORTHO05D009228 4.3e-13 80.9 178 31.5
A08p31280 Brassica napus HOM05D000163 ORTHO05D000219 5.6e-13 80.5 355 24.2
Nitab4.5_0000642g0070 Nicotiana tabacum HOM05D007396 ORTHO05D009228 5.6e-13 80.5 260 25.8
RcHm_v2.0_Chr2g0149061 Rosa chinensis HOM05D007396 ORTHO05D009228 5.6e-13 80.5 332 28.3
C08p17550 Brassica napus HOM05D000163 ORTHO05D009228 7.3e-13 80.1 348 26.7
BraA08t35051Z Brassica rapa HOM05D000163 ORTHO05D000219 7.3e-13 80.1 355 26.8
Cfa003427 Carpinus fangiana HOM05D007396 ORTHO05D009228 9.5e-13 79.7 264 25.8
Aa31LG7G1230 Aethionema arabicum HOM05D007396 ORTHO05D009228 1.2e-12 79.3 340 33.2
BolC8t49381H Brassica oleracea HOM05D000163 ORTHO05D000219 1.2e-12 79.3 347 26.2
FvH4_6g36570 Fragaria vesca HOM05D007396 ORTHO05D009228 1.2e-12 79.3 178 32.0
Sopen03g032560 Solanum pennellii HOM05D007396 ORTHO05D009228 2.1e-12 78.6 323 25.4
PGSC0003DMG400024566 Solanum tuberosum HOM05D007396 ORTHO05D009228 2.1e-12 78.6 322 25.5
Prupe.3G025300 Prunus persica HOM05D007396 ORTHO05D009228 2.8e-12 78.2 319 24.8
GSVIVG01029532001 Vitis vinifera HOM05D007396 ORTHO05D009228 2.8e-12 78.2 184 31.0
unitig_32.g11080 Utricularia gibba HOM05D007396 ORTHO05D009228 3.6e-12 77.8 172 32.0
Aqoxy2G02658 Aquilegia oxysepala HOM05D007396 ORTHO05D009228 4.7e-12 77.4 258 24.4
EL10Ac7g18125 Beta vulgaris HOM05D007396 ORTHO05D009228 6.2e-12 77.0 177 31.1
AT1G16770 Arabidopsis thaliana HOM05D007396 ORTHO05D009228 8.0e-12 76.6 117 35.0
FAN02G1321 Fragaria x ananassa HOM05D000163 ORTHO05D000219 8.0e-12 76.6 321 25.9
Sc05g0005440 Simmondsia chinensis HOM05D007396 ORTHO05D009228 8.0e-12 76.6 327 24.5
CANSAT01G2937 Cannabis sativa HOM05D007396 ORTHO05D009228 1.1e-11 76.3 116 35.3
PSO063G4472 Papaver somniferum HOM05D007396 ORTHO05D009228 1.1e-11 76.3 348 23.6
PSO170G5362 Papaver somniferum HOM05D007396 ORTHO05D009228 1.1e-11 76.3 199 29.6
Eucgr.E02270 Eucalyptus grandis HOM05D007396 ORTHO05D009228 1.4e-11 75.9 264 25.0
Eucgr.E02321 Eucalyptus grandis HOM05D007396 ORTHO05D009228 1.4e-11 75.9 115 37.4
BcaC07g38814 Brassica carinata HOM05D007396 ORTHO05D009228 1.8e-11 75.5 319 26.3
Eucgr.E02613 Eucalyptus grandis HOM05D007396 ORTHO05D009228 2.3e-11 75.1 184 31.5
FAN09G0647 Fragaria x ananassa HOM05D007396 ORTHO05D009228 2.3e-11 75.1 115 35.7
Migut.M00713 Erythranthe guttata HOM05D007396 ORTHO05D009228 3.1e-11 74.7 193 30.6
Hund05665 Selenicereus undatus HOM05D007396 ORTHO05D009228 3.1e-11 74.7 317 24.6
SalBow6G2527 Salvia bowleyana HOM05D007396 ORTHO05D009228 4.0e-11 74.3 172 30.8
Nn8g41117 Nelumbo nucifera HOM05D007396 ORTHO05D009228 8.9e-11 73.2 346 23.7
PGR031G2036 Punica granatum HOM05D007396 ORTHO05D009228 8.9e-11 73.2 328 24.4
MBI13_g34300_MAGBIO Magnolia biondii HOM05D007396 ORTHO05D009228 1.5e-10 72.4 177 29.4
COL.COLO4_38280 Corchorus olitorius HOM05D007396 ORTHO05D009228 2.0e-10 72.0 322 23.9
SGA_v2.0_scaffold71G23969 Striga asiatica HOM05D000927 ORTHO05D009228 2.0e-10 72.0 263 25.1
Ciclev10013937m.g Citrus clementina HOM05D007396 ORTHO05D009228 3.4e-10 71.2 258 24.4
CsaV3_4G028760 Cucumis sativus L. HOM05D007396 ORTHO05D009228 3.4e-10 71.2 183 31.1
Eucgr.E02918 Eucalyptus grandis HOM05D007396 ORTHO05D009228 9.8e-10 69.7 114 36.8
Eucgr.E02934 Eucalyptus grandis HOM05D007396 ORTHO05D009228 1.3e-09 69.3 180 29.4
Cc02_g09240 Coffea canephora HOM05D007396 ORTHO05D009228 2.2e-09 68.6 180 28.9
vmacro00415 Vaccinium macrocarpon HOM05D007396 ORTHO05D009228 2.2e-09 68.6 181 29.8
Oeu045511.1 Olea europaea HOM05D007396 ORTHO05D009228 2.9e-09 68.2 176 30.1
QL03p030511 Quercus lobata HOM05D007396 ORTHO05D009228 2.9e-09 68.2 328 24.7
Medtr2g105720 Medicago truncatula HOM05D007396 ORTHO05D009228 2.4e-08 65.1 189 27.5
Sed0010526 Sechium edule HOM05D007396 ORTHO05D009228 2.4e-08 65.1 329 22.8
Eucgr.E02145 Eucalyptus grandis HOM05D007396 ORTHO05D009228 5.4e-08 63.9 115 36.5
Eucgr.E02947 Eucalyptus grandis HOM05D007396 ORTHO05D009228 1.6e-07 62.4 88 38.6
ATR0626G334 Amborella trichopoda HOM05D007396 ORTHO05D009228 7.8e-07 60.1 135 32.6


User provided reference genes

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