Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre07.g325500 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D007838 0.0e+00 2784.2 1400 100.0
MCO07G263 Micromonas commoda HOM05D005347 ORTHO05D007838 0.0e+00 1999.6 1332 74.4
CBR_g40549 Chara braunii HOM05D005347 ORTHO05D007838 0.0e+00 1938.3 1335 71.9
Mapoly0008s0194 Marchantia polymorpha HOM05D005347 ORTHO05D007838 0.0e+00 1927.1 1335 71.4
Pp3c10_13960 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 1913.3 1352 70.4
Pp3c10_13970 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 1913.3 1352 70.4
AagrBONN_evm.TU.Sc2ySwM_368.2268 Anthoceros agrestis HOM05D005347 ORTHO05D007838 0.0e+00 1899.4 1353 69.5
Zm00001eb433610 Zea mays HOM05D005347 ORTHO05D007838 0.0e+00 1885.2 1335 69.7
SMO347G0130 Selaginella moellendorffii HOM05D005347 ORTHO05D007838 0.0e+00 1879.0 1338 69.5
Lj1g0017211 Lotus japonicus HOM05D005347 ORTHO05D007838 0.0e+00 1878.6 1334 69.1
VMungo1383G0107 Vigna mungo HOM05D005347 ORTHO05D007838 0.0e+00 1877.4 1351 68.4
TAR465G0003 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1876.3 1350 68.8
Glyma.19G139300 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 1875.9 1348 68.7
Dinv12481 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 1875.5 1334 69.4
arahy.Tifrunner.gnm1.ann1.RSU8B2 Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 1875.1 1339 69.1
Glyma.03G137000 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 1875.1 1350 68.5
Nn7g36281 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 1874.0 1334 69.1
arahy.Tifrunner.gnm1.ann1.XR90DA Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 1872.4 1339 69.0
MELO3C023131.2 Cucumis melo HOM05D005347 ORTHO05D007838 0.0e+00 1872.4 1346 68.6
Gorai.006G136500 Gossypium raimondii HOM05D005347 ORTHO05D007838 0.0e+00 1872.4 1346 68.4
Glyma.10G097800 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 1872.1 1351 68.0
Cfa016819 Carpinus fangiana HOM05D005347 ORTHO05D007838 0.0e+00 1871.7 1359 68.1
Duzib093G0142 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 1871.3 1350 68.6
Phvul.007G252700 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 1871.3 1359 68.0
Gohir.A09G122100 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 1870.5 1334 68.8
CsaV3_4G011730 Cucumis sativus L. HOM05D005347 ORTHO05D007838 0.0e+00 1869.7 1346 68.2
Lalb_Chr25g0287111 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 1869.4 1348 68.0
Dinv39601 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 1869.0 1334 69.1
Actinidia17237 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 1868.6 1359 68.1
TWI53G0247 Tripterygium wilfordii HOM05D005347 ORTHO05D007838 0.0e+00 1868.6 1334 69.1
ClCG04G000090 Citrullus lanatus HOM05D005347 ORTHO05D007838 0.0e+00 1867.8 1346 68.4
Phvul.001G132200 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 1867.4 1359 67.6
SalBow6G2907 Salvia bowleyana HOM05D005347 ORTHO05D007838 0.0e+00 1867.0 1334 68.4
Nn2g15252 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 1866.7 1334 68.8
Sopen04g007830 Solanum pennellii HOM05D005347 ORTHO05D007838 0.0e+00 1866.7 1358 68.3
SGA_v2.0_scaffold105G30411 Striga asiatica HOM05D005347 ORTHO05D007838 0.0e+00 1866.7 1334 68.4
Solyc04g015750.3 Solanum lycopersicum HOM05D005347 ORTHO05D007838 0.0e+00 1866.3 1359 68.2
Oeu008920.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 1865.5 1334 69.0
CAN.G676.69 Capsicum annuum HOM05D005347 ORTHO05D007838 0.0e+00 1865.1 1336 68.9
Cc06_g17100 Coffea canephora HOM05D005347 ORTHO05D007838 0.0e+00 1865.1 1349 68.6
Actinidia38547 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 1864.7 1334 69.0
QL07p000318 Quercus lobata HOM05D005347 ORTHO05D007838 0.0e+00 1864.7 1349 68.3
Lalb_Chr20g0110491 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 1864.0 1348 67.7
Ciclev10004154m.g Citrus clementina HOM05D005347 ORTHO05D007838 0.0e+00 1863.2 1334 68.8
Sed0003738 Sechium edule HOM05D005347 ORTHO05D007838 0.0e+00 1862.8 1346 68.1
PGSC0003DMG400027276 Solanum tuberosum HOM05D005347 ORTHO05D007838 0.0e+00 1862.4 1358 68.1
MBI17_g13973_MAGBIO Magnolia biondii HOM05D005347 ORTHO05D007838 0.0e+00 1861.7 1345 68.6
CSS0016317 Camellia sinensis var. sinensis HOM05D005347 ORTHO05D007838 0.0e+00 1860.9 1334 68.2
Atru.chr1.1096 Acer truncatum HOM05D005347 ORTHO05D007838 0.0e+00 1860.5 1349 68.0
Duzib128G0418 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 1860.5 1350 68.1
Ca_26018_v3 Cicer arietinum L. HOM05D005347 ORTHO05D007838 0.0e+00 1860.1 1336 68.1
PGR004G1765 Punica granatum HOM05D005347 ORTHO05D007838 0.0e+00 1859.7 1349 67.8
COL.COLO4_28282 Corchorus olitorius HOM05D005347 ORTHO05D007838 0.0e+00 1859.3 1348 68.4
Aqoxy2G00152 Aquilegia oxysepala HOM05D005347 ORTHO05D007838 0.0e+00 1858.6 1348 67.8
MSTRG.10814 Avicennia marina HOM05D005347 ORTHO05D007838 0.0e+00 1858.6 1334 68.4
Hma1.2p1_2002F.1_g310740 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 1858.2 1334 68.2
MD12G1073700 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 1858.2 1358 67.5
MD14G1072000 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 1856.6 1334 68.2
Manes.08G050600 Manihot esculenta HOM05D005347 ORTHO05D007838 0.0e+00 1854.7 1336 68.5
SEGI_14472 Sequoiadendron giganteum HOM05D005347 ORTHO05D007838 0.0e+00 1854.3 1334 68.8
ATR0626G393 Amborella trichopoda HOM05D005347 ORTHO05D007838 0.0e+00 1854.0 1336 68.6
Migut.J01759 Erythranthe guttata HOM05D005347 ORTHO05D007838 0.0e+00 1853.6 1337 68.4
HanXRQChr10g0296641 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 1853.6 1334 67.8
Eucgr.A02348 Eucalyptus grandis HOM05D005347 ORTHO05D007838 0.0e+00 1853.2 1360 67.7
HanXRQChr10g0288781 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 1852.4 1334 67.8
AUR62024447 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 1851.6 1334 68.6
Lsat_1_v5_gn_9_29020 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 1851.6 1334 67.8
Prupe.7G061100 Prunus persica HOM05D005347 ORTHO05D007838 0.0e+00 1850.9 1334 68.3
AT5G13630 Arabidopsis thaliana HOM05D005347 ORTHO05D007838 0.0e+00 1850.5 1347 67.6
CARHR199810 Cardamine hirsuta HOM05D005347 ORTHO05D007838 0.0e+00 1850.5 1350 67.3
AL6G24240 Arabidopsis lyrata HOM05D005347 ORTHO05D007838 0.0e+00 1850.1 1334 68.0
EL10Ac3g07089 Beta vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 1849.7 1334 68.4
RcHm_v2.0_Chr3g0482331 Rosa chinensis HOM05D005347 ORTHO05D007838 0.0e+00 1849.7 1336 68.2
Carub.0006s1179 Capsella rubella HOM05D005347 ORTHO05D007838 0.0e+00 1849.3 1347 67.6
ECA247G2461 Erigeron canadensis HOM05D005347 ORTHO05D007838 0.0e+00 1849.3 1334 67.8
AUR62026037 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 1848.9 1334 68.5
FAN05G5756 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 1848.9 1336 68.3
DCAR_013602 Daucus carota HOM05D005347 ORTHO05D007838 0.0e+00 1848.6 1352 67.6
FAN02G3940 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 1848.2 1336 68.2
PSO384G4351 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 1848.2 1353 67.5
FvH4_6g23800 Fragaria vesca HOM05D005347 ORTHO05D007838 0.0e+00 1847.4 1336 68.2
FAN14G0383 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 1847.4 1336 68.2
Psat6g120040 Pisum sativum HOM05D005347 ORTHO05D007838 0.0e+00 1847.4 1348 67.1
PSO339G0901 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 1844.7 1353 67.4
Rhsim04G0102500 Rhododendron simsii HOM05D005347 ORTHO05D007838 0.0e+00 1844.7 1334 68.4
Sp6g30390 Schrenkiella parvula HOM05D005347 ORTHO05D007838 0.0e+00 1844.7 1347 67.3
Aa31sc144G60 Aethionema arabicum HOM05D005347 ORTHO05D007838 0.0e+00 1844.3 1334 68.0
HPP92_012089 Vanilla planifolia HOM05D005347 ORTHO05D007838 0.0e+00 1842.4 1336 68.6
Thhalv10012443m.g Eutrema salsugineum HOM05D005347 ORTHO05D007838 0.0e+00 1841.6 1347 67.2
BcaB01g05345 Brassica carinata HOM05D005347 ORTHO05D007838 0.0e+00 1838.2 1335 67.9
C03p07120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 1837.8 1335 67.8
A03p06120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 1837.4 1335 67.9
BraA03t09944Z Brassica rapa HOM05D005347 ORTHO05D007838 0.0e+00 1837.4 1335 67.9
BolC3t13211H Brassica oleracea HOM05D005347 ORTHO05D007838 0.0e+00 1836.2 1335 67.7
Potri.006G051100 Populus trichocarpa HOM05D005347 ORTHO05D007838 0.0e+00 1835.8 1350 67.1
FAN09G2062 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 1832.4 1363 66.8
Gohir.D09G118200 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 1831.6 1334 67.9
Lsat_1_v5_gn_9_29121 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 1823.9 1395 64.9
Peaxi162Scf00130g00022 Petunia axillaris HOM05D005347 ORTHO05D007838 0.0e+00 1822.4 1359 67.3
Cpa.g.sc92.51 Carica papaya HOM05D005347 ORTHO05D007838 0.0e+00 1810.4 1350 66.3
CDE05G2234 Ceratophyllum demersum HOM05D005347 ORTHO05D007838 0.0e+00 1800.4 1334 67.0
Sabra06G0035800 Salix brachista HOM05D005347 ORTHO05D007838 0.0e+00 1796.2 1334 66.5
Haze_19858 Corylus avellana HOM05D005347 ORTHO05D007838 0.0e+00 1790.8 1359 65.9
Ah.13g076460 Amaranthus hybridus HOM05D005347 ORTHO05D007838 0.0e+00 1788.5 1334 67.0
unitig_578.g15983 Utricularia gibba HOM05D005347 ORTHO05D007838 0.0e+00 1754.2 1377 65.0
vmacro09075 Vaccinium macrocarpon HOM05D005347 ORTHO05D007838 0.0e+00 1743.8 1350 65.0
Sc04g0002790 Simmondsia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 1667.1 1213 68.5
CiPaw.10G033300 Carya illinoinensis HOM05D005347 ORTHO05D007838 0.0e+00 1660.2 1212 68.1
Thecc.05G153600 Theobroma cacao HOM05D005347 ORTHO05D007838 0.0e+00 1648.3 1227 66.9
TPR.G10615 Trifolium pratense HOM05D005347 ORTHO05D007838 0.0e+00 1635.5 1317 63.2
Oeu017946.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 1503.4 1333 59.4
Nitab4.5_0005195g0040 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 1445.6 1072 66.0
GSVIVG01033277001 Vitis vinifera HOM05D005347 ORTHO05D007838 0.0e+00 1434.9 1365 57.2
Nitab4.5_0010636g0020 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 1430.6 1084 65.2
Hund05283 Selenicereus undatus HOM05D005347 ORTHO05D007838 0.0e+00 1335.1 916 71.1
Hma1.2p1_2002F.1_g310730 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 1332.0 968 68.1
Lju124A41T48 Lonicera japonica HOM05D005347 ORTHO05D007838 0.0e+00 1301.6 901 71.6
TAR623G1548 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1207.2 812 72.7
TAR369G0825 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1192.2 812 71.6
Os07g0656500 Oryza sativa ssp. japonica HOM05D005347 ORTHO05D007838 2.1e-272 943.3 696 68.8
PRCOL_00001535 Prasinoderma coloniale HOM05D005347 ORTHO05D007838 3.2e-265 919.5 1205 44.2
MD03G1176300 Malus domestica HOM05D005347 ORTHO05D021808 4.2e-241 839.3 676 62.0
Zm00001eb066400 Zea mays HOM05D005347 ORTHO05D007838 1.1e-233 814.7 576 69.1
MD09G1118200 Malus domestica HOM05D005347 ORTHO05D007838 6.3e-229 798.9 670 60.7
TPR.G25646 Trifolium pratense HOM05D005347 ORTHO05D007838 3.2e-188 663.7 593 58.3
MCO07G355 Micromonas commoda HOM05D005347 ORTHO05D034305 7.0e-188 662.5 1373 32.6
Cre11.g477625 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D034305 1.4e-172 611.7 1483 30.5
TAR369G0767 Trochodendron aralioides HOM05D005347 ORTHO05D021808 4.8e-152 543.5 435 62.5
TAR623G0733 Trochodendron aralioides HOM05D005347 ORTHO05D021808 8.1e-152 542.7 435 62.8
Lju124C41T11 Lonicera japonica HOM05D005347 ORTHO05D021808 1.2e-150 538.9 435 60.7
CDE07G0141 Ceratophyllum demersum HOM05D005347 ORTHO05D021808 7.1e-148 529.6 398 64.8
BcaB01g05344 Brassica carinata HOM05D005347 ORTHO05D021808 4.6e-147 526.9 419 62.8
CBR_g6691 Chara braunii HOM05D005347 ORTHO05D034305 7.4e-121 439.9 1288 28.6
TPR.G7382 Trifolium pratense HOM05D005347 ORTHO05D030226 1.0e-77 296.6 173 80.3
TPR.G20810 Trifolium pratense HOM05D005347 ORTHO05D030226 1.6e-51 209.5 121 77.7
Zm00001eb066410 Zea mays HOM05D005347 ORTHO05D007838 8.4e-48 197.2 147 61.9
FAN15G2164 Fragaria x ananassa HOM05D005347 ORTHO05D007838 5.3e-34 151.4 107 71.0
Nn2g10425 Nelumbo nucifera HOM05D005347 ORTHO05D277195 1.1e-28 133.7 139 48.9
Nn7g36276 Nelumbo nucifera HOM05D005347 ORTHO05D030226 2.4e-26 125.9 99 66.7
Pp3c5_16660 Physcomitrium patens HOM05D005347 ORTHO05D030226 4.5e-25 121.7 91 67.0
Psat4g101600 Pisum sativum HOM05D000140 ORTHO05D014072 4.8e-19 101.7 109 49.5
Lsat_1_v5_gn_5_109040 Lactuca sativa HOM05D005347 ORTHO05D231332 2.7e-14 85.9 68 61.8


User provided reference genes

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