Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre07.g322900 Chlamydomonas reinhardtii HOM05D026284 ORTHO05D007146 0.0e+00 1885.2 1099 100.0
MCO01G367 Micromonas commoda HOM05D026284 ORTHO05D034559 3.4e-44 184.9 454 29.3
MCO01G202 Micromonas commoda HOM05D026284 ORTHO05D034559 8.3e-43 180.3 458 28.4
Cre03.g174950 Chlamydomonas reinhardtii HOM05D026284 ORTHO05D034559 1.7e-24 119.4 225 33.8
Cre10.g463600 Chlamydomonas reinhardtii HOM05D002249 ORTHO05D002443 9.6e-15 87.0 233 33.5
Aa31LG1G8570 Aethionema arabicum HOM05D005970 ORTHO05D007146 5.8e-12 77.8 222 28.8
Phvul.002G135900 Phaseolus vulgaris HOM05D002249 ORTHO05D002443 9.9e-12 77.0 215 27.9
Actinidia32934 Actinidia chinensis HOM05D005970 ORTHO05D007146 1.3e-11 76.6 202 27.2
A10p04500 Brassica napus HOM05D005970 ORTHO05D007146 1.3e-11 76.6 375 23.2
Phvul.002G134900 Phaseolus vulgaris HOM05D002249 ORTHO05D002443 1.3e-11 76.6 232 26.3
Phvul.002G134600 Phaseolus vulgaris HOM05D002249 ORTHO05D002443 1.7e-11 76.3 225 27.1
Cre07.g325150 Chlamydomonas reinhardtii HOM05D004750 ORTHO05D006207 8.4e-11 73.9 203 29.6
Phvul.008G243700 Phaseolus vulgaris HOM05D002249 ORTHO05D002443 1.1e-10 73.6 263 25.1
BraA10t42716Z Brassica rapa HOM05D005970 ORTHO05D007146 1.9e-10 72.8 243 25.5
COL.COLO4_24350 Corchorus olitorius HOM05D005970 ORTHO05D007146 4.2e-10 71.6 225 26.2
A08p36290 Brassica napus HOM05D005970 ORTHO05D007146 1.2e-09 70.1 220 26.4
BraA08t35533Z Brassica rapa HOM05D005970 ORTHO05D007146 1.2e-09 70.1 220 26.4
AT1G05790 Arabidopsis thaliana HOM05D005970 ORTHO05D007146 2.1e-09 69.3 222 27.0
C08p02230 Brassica napus HOM05D005970 ORTHO05D007146 3.5e-09 68.6 218 26.1
BolC8t47015H Brassica oleracea HOM05D005970 ORTHO05D007146 3.5e-09 68.6 218 26.1
Sp1g04590 Schrenkiella parvula HOM05D005970 ORTHO05D007146 3.5e-09 68.6 220 26.4
CARHR005310 Cardamine hirsuta HOM05D005970 ORTHO05D007146 4.6e-09 68.2 220 25.9
FvH4_4g11690 Fragaria vesca HOM05D005970 ORTHO05D007146 6.0e-09 67.8 195 26.7
AL1G15700 Arabidopsis lyrata HOM05D005970 ORTHO05D007146 1.3e-08 66.6 222 26.6
Thhalv10006938m.g Eutrema salsugineum HOM05D005970 ORTHO05D007146 1.3e-08 66.6 222 26.6
FAN12G0387 Fragaria x ananassa HOM05D005970 ORTHO05D007146 1.3e-08 66.6 197 25.4
FAN12G1273 Fragaria x ananassa HOM05D005970 ORTHO05D007146 1.3e-08 66.6 197 25.4
Glyma.09G209400 Glycine max HOM05D002249 ORTHO05D002443 1.3e-08 66.6 189 29.1
THA.LOC104800916 Tarenaya hassleriana HOM05D005970 ORTHO05D007146 1.3e-08 66.6 229 25.8
HPP92_001263 Vanilla planifolia HOM05D005970 ORTHO05D007146 1.3e-08 66.6 203 27.6
Duzib151G0884 Durio zibethinus HOM05D005970 ORTHO05D007146 1.7e-08 66.2 208 26.0
Carub.0001s0513 Capsella rubella HOM05D005970 ORTHO05D007146 2.3e-08 65.9 222 26.1
Cc00_g08710 Coffea canephora HOM05D005970 ORTHO05D007146 2.3e-08 65.9 377 23.9
Dinv22666 Davidia involucrata HOM05D005970 ORTHO05D007146 2.3e-08 65.9 191 28.8
Mapoly0124s0004 Marchantia polymorpha HOM05D002249 ORTHO05D031213 2.3e-08 65.9 77 41.6
RcHm_v2.0_Chr4g0408981 Rosa chinensis HOM05D005970 ORTHO05D007146 2.3e-08 65.9 190 26.3
Glyma.01G012800 Glycine max HOM05D002249 ORTHO05D002443 3.0e-08 65.5 216 26.9
MCO03G080 Micromonas commoda HOM05D002249 ORTHO05D002443 3.0e-08 65.5 206 28.6
MCO14G384 Micromonas commoda HOM05D004750 ORTHO05D006207 3.0e-08 65.5 277 26.0
Prupe.1G181900 Prunus persica HOM05D005970 ORTHO05D007146 3.0e-08 65.5 211 24.2
Ah.12g062330 Amaranthus hybridus HOM05D005970 ORTHO05D007146 3.9e-08 65.1 190 28.4
CSS0014236 Camellia sinensis var. sinensis HOM05D005970 ORTHO05D007146 3.9e-08 65.1 198 27.3
HPP92_001247 Vanilla planifolia HOM05D005970 ORTHO05D007146 3.9e-08 65.1 156 29.5
Aqoxy2G04048 Aquilegia oxysepala HOM05D005970 ORTHO05D007146 6.6e-08 64.3 200 25.0
GSVIVG01013548001 Vitis vinifera HOM05D005970 ORTHO05D007146 6.6e-08 64.3 196 26.0
Glyma.20G248000 Glycine max HOM05D005970 ORTHO05D007146 8.7e-08 63.9 201 25.4
VMungo0720G0532 Vigna mungo HOM05D005970 ORTHO05D007146 8.7e-08 63.9 201 25.4
Gohir.D02G014300 Gossypium hirsutum HOM05D005970 ORTHO05D007146 1.1e-07 63.5 214 22.0
Manes.04G050700 Manihot esculenta HOM05D005970 ORTHO05D007146 1.1e-07 63.5 194 27.8
Atru.chr3.1658_Atru.chr3.1659 Acer truncatum HOM05D005970 ORTHO05D007146 1.5e-07 63.2 194 27.8
Psat6g242520 Pisum sativum HOM05D005970 ORTHO05D007146 1.5e-07 63.2 208 24.5
CiPaw.02G134700 Carya illinoinensis HOM05D002249 ORTHO05D002443 1.9e-07 62.8 222 27.5
Glyma.01G011600 Glycine max HOM05D002249 ORTHO05D002443 1.9e-07 62.8 188 27.1
Nn1g09841 Nelumbo nucifera HOM05D005970 ORTHO05D007146 1.9e-07 62.8 196 23.5
TAR362G0058 Trochodendron aralioides HOM05D005970 ORTHO05D007146 1.9e-07 62.8 203 26.6
QL10p046561 Quercus lobata HOM05D005970 ORTHO05D007146 2.5e-07 62.4 222 25.2
FAN07G1016 Fragaria x ananassa HOM05D005970 ORTHO05D007146 3.3e-07 62.0 197 24.9
Gorai.005G017800 Gossypium raimondii HOM05D005970 ORTHO05D007146 4.3e-07 61.6 214 22.0
Lj5g0014069 Lotus japonicus HOM05D005970 ORTHO05D007146 4.3e-07 61.6 260 23.8
CBR_g51917 Chara braunii HOM05D004750 ORTHO05D006207 7.3e-07 60.8 200 29.0
Phvul.007G002300 Phaseolus vulgaris HOM05D005970 ORTHO05D007146 7.3e-07 60.8 221 24.0
arahy.Tifrunner.gnm1.ann1.L26R3M Arachis hypogaea HOM05D002249 ORTHO05D002443 9.6e-07 60.5 274 23.0
Rhsim09G0037500 Rhododendron simsii HOM05D005970 ORTHO05D007146 9.6e-07 60.5 232 25.4
Ca_11416_v3 Cicer arietinum L. HOM05D005970 ORTHO05D007146 1.3e-06 60.1 209 23.9
Potri.014G150800 Populus trichocarpa HOM05D005970 ORTHO05D007146 1.3e-06 60.1 246 27.6
COL.COLO4_34699 Corchorus olitorius HOM05D002249 ORTHO05D002443 1.6e-06 59.7 219 24.7
CsaV3_3G030770 Cucumis sativus L. HOM05D002249 ORTHO05D002443 1.6e-06 59.7 222 27.5
Eucgr.A00211 Eucalyptus grandis HOM05D005970 ORTHO05D007146 1.6e-06 59.7 226 25.2
Lj3A262T16 Lonicera japonica HOM05D005970 ORTHO05D007146 1.6e-06 59.7 202 24.8
Sabra03G0039800 Salix brachista HOM05D002249 ORTHO05D002443 2.1e-06 59.3 222 26.6
Solyc09g098450.4 Solanum lycopersicum HOM05D005970 ORTHO05D007146 2.1e-06 59.3 195 26.7
Thecc.04G181600 Theobroma cacao HOM05D005970 ORTHO05D007146 2.1e-06 59.3 155 27.1
Zm00001eb257000 Zea mays HOM05D002249 ORTHO05D002443 2.1e-06 59.3 232 28.4
MELO3C011504.2 Cucumis melo HOM05D005970 ORTHO05D007146 2.8e-06 58.9 194 26.8
MELO3C022670.2 Cucumis melo HOM05D002249 ORTHO05D002443 2.8e-06 58.9 222 27.5
Sp3g12330 Schrenkiella parvula HOM05D002249 ORTHO05D002443 2.8e-06 58.9 222 25.7
Cpa.g.sc25.136 Carica papaya HOM05D002249 ORTHO05D002443 3.6e-06 58.5 222 27.0
Manes.11G017300 Manihot esculenta HOM05D002249 ORTHO05D002443 3.6e-06 58.5 222 27.5
Sabra02G0176700 Salix brachista HOM05D005970 ORTHO05D007146 3.6e-06 58.5 203 28.6
Sc22g0002260 Simmondsia chinensis HOM05D005970 ORTHO05D007146 4.8e-06 58.2 152 28.3
Thecc.06G122800 Theobroma cacao HOM05D002249 ORTHO05D002443 4.8e-06 58.2 222 27.9
Ciclev10023314m.g Citrus clementina HOM05D005970 ORTHO05D007146 6.2e-06 57.8 200 29.0
Glyma.01G011500 Glycine max HOM05D002249 ORTHO05D002443 6.2e-06 57.8 216 24.5
Medtr1g116780 Medicago truncatula HOM05D005970 ORTHO05D007146 6.2e-06 57.8 208 24.0
PGR083G2204 Punica granatum HOM05D005970 ORTHO05D007146 6.2e-06 57.8 195 26.2
ClCG08G003970 Citrullus lanatus HOM05D005970 ORTHO05D007146 8.1e-06 57.4 190 26.3
Lalb_Chr12g0201141 Lupinus albus HOM05D002249 ORTHO05D002443 8.1e-06 57.4 88 36.4
Sabra14G0114200 Salix brachista HOM05D005970 ORTHO05D007146 8.1e-06 57.4 100 38.0
TPR.G8892 Trifolium pratense HOM05D005970 ORTHO05D007146 8.1e-06 57.4 194 23.7


User provided reference genes

Program Settings