Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre07.g321350 Chlamydomonas reinhardtii HOM05D019562 ORTHO05D021280 0.0e+00 1268.1 621 100.0
AagrBONN_evm.TU.Sc2ySwM_117.1015 Anthoceros agrestis HOM05D019562 ORTHO05D021280 2.7e-115 420.2 592 42.7
Mapoly0022s0145 Marchantia polymorpha HOM05D019562 ORTHO05D021280 9.6e-97 358.6 486 41.4
Pp3c27_7660 Physcomitrium patens HOM05D019562 ORTHO05D021280 2.6e-94 350.5 523 38.0
CBR_g24078 Chara braunii HOM05D019562 ORTHO05D021280 1.4e-87 328.2 604 34.4
Mapoly0091s0011 Marchantia polymorpha HOM05D019562 ORTHO05D021280 1.0e-82 312.0 469 38.6
LjContig00564g0015126 Lotus japonicus HOM05D007175 ORTHO05D009032 4.1e-15 87.4 589 21.4
Rhsim07G0258300 Rhododendron simsii HOM05D007175 ORTHO05D009032 1.3e-13 82.4 556 20.7
PRCOL_00006786 Prasinoderma coloniale HOM05D007175 ORTHO05D009032 5.1e-13 80.5 271 28.4
RcHm_v2.0_Chr7g0217631 Rosa chinensis HOM05D007175 ORTHO05D009032 6.6e-13 80.1 520 20.6
Lalb_Chr10g0105651 Lupinus albus HOM05D007175 ORTHO05D009032 3.3e-12 77.8 523 20.8
FAN04G1040 Fragaria x ananassa HOM05D007175 ORTHO05D009032 4.3e-12 77.4 520 20.4
Lsat_1_v5_gn_2_2721 Lactuca sativa HOM05D007175 ORTHO05D009032 4.3e-12 77.4 543 20.8
TAR376G0324 Trochodendron aralioides HOM05D007175 ORTHO05D009032 4.3e-12 77.4 376 19.9
FAN08G3457 Fragaria x ananassa HOM05D007175 ORTHO05D009032 5.6e-12 77.0 548 20.4
CiPaw.07G130000 Carya illinoinensis HOM05D007175 ORTHO05D009032 7.3e-12 76.6 543 20.6
Cfa014168 Carpinus fangiana HOM05D007175 ORTHO05D009032 1.2e-11 75.9 553 20.4
FAN13G2687 Fragaria x ananassa HOM05D007175 ORTHO05D009032 1.2e-11 75.9 520 20.2
GSVIVG01013462001 Vitis vinifera HOM05D007175 ORTHO05D009032 1.2e-11 75.9 542 21.4
Haze_22891 Corylus avellana HOM05D007175 ORTHO05D009032 2.1e-11 75.1 550 20.9
Thecc.08G097400 Theobroma cacao HOM05D007175 ORTHO05D009032 2.1e-11 75.1 369 20.6
Cc10_g00080 Coffea canephora HOM05D007175 ORTHO05D009032 2.8e-11 74.7 377 20.4
Glyma.14G047400 Glycine max HOM05D007175 ORTHO05D009032 2.8e-11 74.7 587 21.0
Medtr5g085780 Medicago truncatula HOM05D007175 ORTHO05D009032 3.6e-11 74.3 542 20.1
VMungo0647G1837 Vigna mungo HOM05D007175 ORTHO05D009032 8.1e-11 73.2 240 26.7
FAN18G0319 Fragaria x ananassa HOM05D007175 ORTHO05D009032 1.1e-10 72.8 220 26.4
TPR.G14442 Trifolium pratense HOM05D007175 ORTHO05D009032 1.1e-10 72.8 379 20.6
Atru.chr13.18 Acer truncatum HOM05D007175 ORTHO05D009032 1.4e-10 72.4 99 40.4
FvH4_5g26760 Fragaria vesca HOM05D007175 ORTHO05D009032 1.4e-10 72.4 377 21.2
arahy.Tifrunner.gnm1.ann1.YTK8KP Arachis hypogaea HOM05D007175 ORTHO05D009032 1.8e-10 72.0 566 20.0
Duzib116G0712 Durio zibethinus HOM05D007175 ORTHO05D009032 1.8e-10 72.0 77 41.6
arahy.Tifrunner.gnm1.ann1.BW2M8B Arachis hypogaea HOM05D000005 ORTHO05D009032 2.3e-10 71.6 563 19.9
Dinv30325 Davidia involucrata HOM05D007175 ORTHO05D009032 2.3e-10 71.6 526 20.3
Lalb_Chr17g0347321 Lupinus albus HOM05D007175 ORTHO05D009032 3.1e-10 71.2 523 19.9
Glyma.02G269500 Glycine max HOM05D007175 ORTHO05D009032 4.0e-10 70.9 240 27.5
Gohir.A01G101333 Gossypium hirsutum HOM05D007175 ORTHO05D009032 4.0e-10 70.9 77 44.2
Prupe.5G000900 Prunus persica HOM05D007175 ORTHO05D009032 4.0e-10 70.9 259 25.9
DCAR_013353 Daucus carota HOM05D007175 ORTHO05D009032 5.2e-10 70.5 372 20.2
Ca_06102_v3 Cicer arietinum L. HOM05D007175 ORTHO05D009032 6.8e-10 70.1 385 20.0
PSO782G3151 Papaver somniferum HOM05D007175 ORTHO05D009032 8.9e-10 69.7 378 19.6
Phvul.008G212600 Phaseolus vulgaris HOM05D007175 ORTHO05D009032 1.5e-09 68.9 77 42.9
Actinidia37900 Actinidia chinensis HOM05D007175 ORTHO05D009032 2.0e-09 68.6 221 26.7
CSS0024225 Camellia sinensis var. sinensis HOM05D007175 ORTHO05D009032 2.0e-09 68.6 249 26.5
Psat2g024960 Pisum sativum HOM05D007175 ORTHO05D009032 2.0e-09 68.6 380 20.0
Cpa.g.sc36.96 Carica papaya HOM05D007175 ORTHO05D009032 2.6e-09 68.2 556 19.6
Gohir.D01G086300 Gossypium hirsutum HOM05D007175 ORTHO05D009032 2.6e-09 68.2 77 40.3
Gorai.002G111700 Gossypium raimondii HOM05D007175 ORTHO05D009032 2.6e-09 68.2 77 40.3
Os02g0592200 Oryza sativa ssp. japonica HOM05D007175 ORTHO05D009032 2.6e-09 68.2 220 26.8
HanXRQChr14g0427501 Helianthus annuus HOM05D007175 ORTHO05D009032 5.8e-09 67.0 389 20.3
Lj4A814G51 Lonicera japonica HOM05D007175 ORTHO05D009032 7.6e-09 66.6 78 43.6
EL10Ac1g01857 Beta vulgaris HOM05D007175 ORTHO05D009032 1.3e-08 65.9 96 38.5
PSO063G3513 Papaver somniferum HOM05D007175 ORTHO05D009032 1.3e-08 65.9 537 18.8
Potri.005G259700 Populus trichocarpa HOM05D007175 ORTHO05D009032 1.3e-08 65.9 78 42.3
Sabra05G0201000 Salix brachista HOM05D007175 ORTHO05D009032 1.3e-08 65.9 222 27.5
AL8G19150 Arabidopsis lyrata HOM05D007175 ORTHO05D009032 2.2e-08 65.1 367 18.8
CSS0000573 Camellia sinensis var. sinensis HOM05D007175 ORTHO05D009032 2.2e-08 65.1 77 40.3
CSS0003113 Camellia sinensis var. sinensis HOM05D007175 ORTHO05D009032 2.2e-08 65.1 77 40.3
CSS0005819 Camellia sinensis var. sinensis HOM05D007175 ORTHO05D009032 2.2e-08 65.1 77 40.3
Pp3c5_8650 Physcomitrium patens HOM05D007175 ORTHO05D009032 2.2e-08 65.1 223 26.9
THA.LOC104806865 Tarenaya hassleriana HOM05D007175 ORTHO05D009032 2.9e-08 64.7 366 20.5
CSS0005025 Camellia sinensis var. sinensis HOM05D007175 ORTHO05D009032 3.7e-08 64.3 77 40.3
CSS0026468 Camellia sinensis var. sinensis HOM05D007175 ORTHO05D009032 3.7e-08 64.3 77 40.3
CsaV3_4G037860 Cucumis sativus L. HOM05D007175 ORTHO05D009032 3.7e-08 64.3 378 19.8
Eucgr.F03631 Eucalyptus grandis HOM05D007175 ORTHO05D009032 3.7e-08 64.3 256 24.6
BcaC04g21999 Brassica carinata HOM05D007175 ORTHO05D009032 4.9e-08 63.9 223 24.2
C09p25000 Brassica napus HOM05D007175 ORTHO05D009032 4.9e-08 63.9 223 24.2
ClCG11G019270 Citrullus lanatus HOM05D007175 ORTHO05D009032 4.9e-08 63.9 379 20.3
ATR0605G370 Amborella trichopoda HOM05D007175 ORTHO05D009032 6.4e-08 63.5 221 24.9
Ciclev10003552m.g Citrus clementina HOM05D007175 ORTHO05D009032 6.4e-08 63.5 267 25.5
COL.COLO4_12263 Corchorus olitorius HOM05D007175 ORTHO05D009032 6.4e-08 63.5 77 39.0
ECA238G4354 Erigeron canadensis HOM05D007175 ORTHO05D009032 6.4e-08 63.5 555 19.1
Oeu000737.1 Olea europaea HOM05D007175 ORTHO05D009032 6.4e-08 63.5 236 27.1
QL02p016318 Quercus lobata HOM05D007175 ORTHO05D009032 6.4e-08 63.5 380 21.1
CAN.G1330.33 Capsicum annuum HOM05D007175 ORTHO05D009032 8.4e-08 63.2 77 37.7
Zm00001eb245810 Zea mays HOM05D007175 ORTHO05D009032 8.4e-08 63.2 77 37.7
CANSAT25G0321 Cannabis sativa HOM05D007175 ORTHO05D009032 1.1e-07 62.8 79 40.5
Nn5g31081 Nelumbo nucifera HOM05D007175 ORTHO05D009032 1.1e-07 62.8 99 35.4
THA.LOC104801648 Tarenaya hassleriana HOM05D007175 ORTHO05D009032 1.1e-07 62.8 523 18.7
TWI36G1138 Tripterygium wilfordii HOM05D007175 ORTHO05D009032 1.1e-07 62.8 261 24.1
Ah.14g086450 Amaranthus hybridus HOM05D007175 ORTHO05D009032 1.4e-07 62.4 77 39.0
Aqoxy5G03363 Aquilegia oxysepala HOM05D007175 ORTHO05D009032 2.4e-07 61.6 77 36.4
CARHR285020 Cardamine hirsuta HOM05D007175 ORTHO05D009032 2.4e-07 61.6 511 19.0
PSO063G1612 Papaver somniferum HOM05D007175 ORTHO05D009032 4.1e-07 60.8 236 23.3
Aa31LG9G12520 Aethionema arabicum HOM05D007175 ORTHO05D009032 5.4e-07 60.5 382 19.6
Sp7g08160 Schrenkiella parvula HOM05D007175 ORTHO05D009032 5.4e-07 60.5 367 19.1
HPP92_018864 Vanilla planifolia HOM05D007175 ORTHO05D009032 5.4e-07 60.5 77 36.4
Manes.18G000500 Manihot esculenta HOM05D007175 ORTHO05D009032 7.1e-07 60.1 99 34.3
BraA09t37575Z Brassica rapa HOM05D007175 ORTHO05D009032 9.2e-07 59.7 220 24.1
AUR62042532 Chenopodium quinoa HOM05D007175 ORTHO05D009032 9.2e-07 59.7 77 39.0
Thhalv10003204m.g Eutrema salsugineum HOM05D007175 ORTHO05D009032 9.2e-07 59.7 234 22.2
A09p19640 Brassica napus HOM05D007175 ORTHO05D009032 1.2e-06 59.3 220 24.1
AT5G42370 Arabidopsis thaliana HOM05D007175 ORTHO05D009032 1.6e-06 58.9 77 35.1
BolC9t55392H Brassica oleracea HOM05D007175 ORTHO05D009032 1.6e-06 58.9 223 23.8
AUR62035193 Chenopodium quinoa HOM05D007175 ORTHO05D009032 1.6e-06 58.9 77 36.4
MELO3C017080.2 Cucumis melo HOM05D007175 ORTHO05D009032 1.6e-06 58.9 77 37.7
Mapoly0013s0050 Marchantia polymorpha HOM05D007175 ORTHO05D009032 1.6e-06 58.9 100 33.0
SMO259G0040 Selaginella moellendorffii HOM05D007175 ORTHO05D009032 2.1e-06 58.5 221 23.5
AagrBONN_evm.TU.Sc2ySwM_117.3655 Anthoceros agrestis HOM05D007175 ORTHO05D009032 2.7e-06 58.2 77 39.0
BcaB07g31081 Brassica carinata HOM05D007175 ORTHO05D009032 7.8e-06 56.6 223 23.3


User provided reference genes

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