Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre07.g320250 Chlamydomonas reinhardtii HOM05D005471 ORTHO05D006170 2.6e-226 788.5 426 100.0
FvH4_2g32730 Fragaria vesca HOM05D005471 ORTHO05D006170 7.5e-16 89.4 335 28.7
FAN24G0217 Fragaria x ananassa HOM05D005471 ORTHO05D006170 9.8e-16 89.0 349 27.8
FAN20G2694 Fragaria x ananassa HOM05D005471 ORTHO05D006170 2.2e-15 87.8 337 28.2
FAN15G0642 Fragaria x ananassa HOM05D005471 ORTHO05D006170 6.3e-15 86.3 337 28.2
arahy.Tifrunner.gnm1.ann1.P8GEK4 Arachis hypogaea HOM05D005471 ORTHO05D006170 1.4e-14 85.1 335 28.7
FAN27G0342 Fragaria x ananassa HOM05D005471 ORTHO05D006170 7.0e-14 82.8 351 27.1
CBR_g49495 Chara braunii HOM05D005471 ORTHO05D006170 2.9e-12 77.4 365 26.8
Atru.chr13.864 Acer truncatum HOM05D005471 ORTHO05D006170 3.8e-12 77.0 337 26.4
Eucgr.F02230 Eucalyptus grandis HOM05D005471 ORTHO05D006170 5.0e-12 76.6 344 26.7
MELO3C010789.2 Cucumis melo HOM05D005471 ORTHO05D006170 8.5e-12 75.9 337 27.3
Ciclev10001411m.g Citrus clementina HOM05D005471 ORTHO05D006170 1.1e-11 75.5 333 26.1
CsaV3_2G025960 Cucumis sativus L. HOM05D005471 ORTHO05D006170 1.1e-11 75.5 338 26.6
Phvul.009G073700 Phaseolus vulgaris HOM05D005471 ORTHO05D006170 1.1e-11 75.5 332 25.9
Prupe.1G419800 Prunus persica HOM05D005471 ORTHO05D006170 1.5e-11 75.1 328 25.3
Lalb_Chr08g0245201 Lupinus albus HOM05D005471 ORTHO05D006170 1.9e-11 74.7 335 26.0
TWI12G0997 Tripterygium wilfordii HOM05D005471 ORTHO05D006170 1.9e-11 74.7 336 26.2
CiPaw.07G172600 Carya illinoinensis HOM05D005471 ORTHO05D006170 2.5e-11 74.3 351 26.5
Medtr3g103350 Medicago truncatula HOM05D005471 ORTHO05D006170 5.5e-11 73.2 344 25.0
ClCG08G016670 Citrullus lanatus HOM05D005471 ORTHO05D006170 7.2e-11 72.8 337 24.9
GSVIVG01009307001 Vitis vinifera HOM05D005471 ORTHO05D006170 7.2e-11 72.8 349 26.9
Lj1g0028245 Lotus japonicus HOM05D005471 ORTHO05D006170 1.2e-10 72.0 327 24.8
Manes.18G048900 Manihot esculenta HOM05D005471 ORTHO05D006170 1.6e-10 71.6 335 26.0
THA.LOC104819922 Tarenaya hassleriana HOM05D005471 ORTHO05D006170 1.6e-10 71.6 334 26.0
MD08G1078900 Malus domestica HOM05D005471 ORTHO05D006170 2.1e-10 71.2 334 25.4
Manes.05G183100 Manihot esculenta HOM05D005471 ORTHO05D006170 2.1e-10 71.2 364 24.7
TPR.G30210 Trifolium pratense HOM05D005471 ORTHO05D006170 2.1e-10 71.2 347 27.4
Nn5g30656 Nelumbo nucifera HOM05D005471 ORTHO05D006170 2.7e-10 70.9 336 25.9
RcHm_v2.0_Chr6g0309951 Rosa chinensis HOM05D005471 ORTHO05D006170 3.6e-10 70.5 267 27.3
Sed0019663 Sechium edule HOM05D005471 ORTHO05D006170 3.6e-10 70.5 337 25.8
MD15G1065900 Malus domestica HOM05D005471 ORTHO05D006170 4.7e-10 70.1 334 25.7
CiPaw.08G051800 Carya illinoinensis HOM05D005471 ORTHO05D006170 6.1e-10 69.7 427 25.8
COL.COLO4_28470 Corchorus olitorius HOM05D005471 ORTHO05D006170 8.0e-10 69.3 334 27.5
Glyma.06G048400 Glycine max HOM05D005471 ORTHO05D006170 8.0e-10 69.3 332 24.7
Lalb_Chr11g0063001 Lupinus albus HOM05D005471 ORTHO05D006170 1.0e-09 68.9 335 24.2
Psat5g045040 Pisum sativum HOM05D005471 ORTHO05D006170 1.4e-09 68.6 353 24.1
Sp2g05030 Schrenkiella parvula HOM05D005471 ORTHO05D006170 1.4e-09 68.6 334 25.1
Migut.C00408 Erythranthe guttata HOM05D005471 ORTHO05D006170 1.8e-09 68.2 338 26.3
A01p28660 Brassica napus HOM05D005471 ORTHO05D006170 3.0e-09 67.4 337 25.2
Sabra14G0008300 Salix brachista HOM05D005471 ORTHO05D006170 3.0e-09 67.4 344 25.3
Solyc04g077560.3 Solanum lycopersicum HOM05D005471 ORTHO05D006170 3.0e-09 67.4 346 25.1
Sopen04g031200 Solanum pennellii HOM05D005471 ORTHO05D006170 3.0e-09 67.4 346 25.1
SGA_v2.0_scaffold74G24542 Striga asiatica HOM05D005471 ORTHO05D006170 3.0e-09 67.4 336 26.5
BcaC09g49476 Brassica carinata HOM05D005471 ORTHO05D006170 4.0e-09 67.0 334 25.7
C01p36310 Brassica napus HOM05D005471 ORTHO05D006170 4.0e-09 67.0 334 25.7
HanXRQChr09g0254061 Helianthus annuus HOM05D005471 ORTHO05D006170 4.0e-09 67.0 334 25.4
MBI16_g27035_MAGBIO Magnolia biondii HOM05D005471 ORTHO05D006170 4.0e-09 67.0 339 24.8
CARHR283850 Cardamine hirsuta HOM05D005471 ORTHO05D006170 5.2e-09 66.6 344 25.0
Dinv44934 Davidia involucrata HOM05D005471 ORTHO05D006170 5.2e-09 66.6 261 28.0
PGSC0003DMG400004915 Solanum tuberosum HOM05D005471 ORTHO05D006170 5.2e-09 66.6 346 25.1
Aqoxy6G02473 Aquilegia oxysepala HOM05D005471 ORTHO05D006170 6.8e-09 66.2 334 24.9
arahy.Tifrunner.gnm1.ann1.F72CPE Arachis hypogaea HOM05D005471 ORTHO05D006170 6.8e-09 66.2 335 25.4
Carub.0002s0591 Capsella rubella HOM05D005471 ORTHO05D006170 6.8e-09 66.2 378 24.9
Thhalv10023553m.g Eutrema salsugineum HOM05D005471 ORTHO05D006170 6.8e-09 66.2 334 25.1
AagrBONN_evm.TU.Sc2ySwM_368.1412 Anthoceros agrestis HOM05D005471 ORTHO05D006170 8.8e-09 65.9 342 25.4
Cc10_g07570 Coffea canephora HOM05D005471 ORTHO05D006170 8.8e-09 65.9 334 26.6
Hma1.2p1_1170F.1_g263420 Hydrangea macrophylla HOM05D005471 ORTHO05D006170 8.8e-09 65.9 348 24.7
Gohir.A06G025200 Gossypium hirsutum HOM05D005471 ORTHO05D006170 1.2e-08 65.5 328 23.8
AT1G59520 Arabidopsis thaliana HOM05D005471 ORTHO05D006170 1.5e-08 65.1 334 24.9
MSTRG.25028 Avicennia marina HOM05D005471 ORTHO05D006170 1.5e-08 65.1 267 26.6
BraA01t03038Z Brassica rapa HOM05D005471 ORTHO05D006170 2.0e-08 64.7 343 24.5
BcaC09g49477 Brassica carinata HOM05D005471 ORTHO05D006170 3.4e-08 63.9 333 24.6
PSO017G6379 Papaver somniferum HOM05D005471 ORTHO05D006170 3.4e-08 63.9 335 26.3
EL10Ac1g02354 Beta vulgaris HOM05D005471 ORTHO05D006170 4.4e-08 63.5 281 24.2
BolC1t03588H Brassica oleracea HOM05D005471 ORTHO05D006170 4.4e-08 63.5 340 25.0
CSS0038926 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 4.4e-08 63.5 252 26.2
CSS0040686 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 4.4e-08 63.5 409 26.7
ECA232G3342 Erigeron canadensis HOM05D005471 ORTHO05D006170 5.7e-08 63.2 334 24.9
HanXRQChr15g0493081 Helianthus annuus HOM05D005471 ORTHO05D006170 5.7e-08 63.2 218 26.1
Cpa.g.sc142.57 Carica papaya HOM05D005471 ORTHO05D006170 7.5e-08 62.8 211 26.5
AUR62035006 Chenopodium quinoa HOM05D005471 ORTHO05D006170 7.5e-08 62.8 203 30.5
Gohir.D06G022300 Gossypium hirsutum HOM05D005471 ORTHO05D006170 9.8e-08 62.4 328 23.5
Gorai.010G026900 Gossypium raimondii HOM05D005471 ORTHO05D006170 9.8e-08 62.4 328 23.5
DCAR_019346 Daucus carota HOM05D005471 ORTHO05D006170 1.7e-07 61.6 335 25.1
Pp3c17_20680 Physcomitrium patens HOM05D005471 ORTHO05D006170 1.7e-07 61.6 371 25.1
QL12p038448 Quercus lobata HOM05D005471 ORTHO05D006170 1.7e-07 61.6 283 24.0
ATR0739G016 Amborella trichopoda HOM05D005471 ORTHO05D006170 2.2e-07 61.2 274 27.4
Thecc.08G085200 Theobroma cacao HOM05D005471 ORTHO05D006170 2.2e-07 61.2 338 23.7
unitig_37.g13113 Utricularia gibba HOM05D005471 ORTHO05D006170 2.2e-07 61.2 346 24.9
Duzib093G1789 Durio zibethinus HOM05D005471 ORTHO05D006170 2.8e-07 60.8 251 23.9
PSO541G0412 Papaver somniferum HOM05D005471 ORTHO05D006170 2.8e-07 60.8 206 30.6
HPP92_007709 Vanilla planifolia HOM05D005471 ORTHO05D006170 2.8e-07 60.8 273 25.6
Ah.05g166980 Amaranthus hybridus HOM05D005471 ORTHO05D006170 3.7e-07 60.5 340 23.8
Glyma.04G047500 Glycine max HOM05D005471 ORTHO05D006170 3.7e-07 60.5 174 29.9
Sc02g0008090 Simmondsia chinensis HOM05D005471 ORTHO05D006170 3.7e-07 60.5 267 25.1
Mapoly0067s0099 Marchantia polymorpha HOM05D005471 ORTHO05D006170 6.3e-07 59.7 321 24.9
PSO675G5405 Papaver somniferum HOM05D005471 ORTHO05D006170 1.1e-06 58.9 343 24.5
SMO117G0302 Selaginella moellendorffii HOM05D005471 ORTHO05D006170 1.1e-06 58.9 267 24.7
CSS0014765 Camellia sinensis var. sinensis HOM05D005471 ORTHO05D006170 1.4e-06 58.5 180 30.0
Cfa013748 Carpinus fangiana HOM05D005471 ORTHO05D006170 1.4e-06 58.5 342 25.4
Os10g0102900 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 2.4e-06 57.8 304 23.4
PSO170G6612 Papaver somniferum HOM05D005471 ORTHO05D006170 2.4e-06 57.8 174 31.0
Gohir.A05G211700 Gossypium hirsutum HOM05D005471 ORTHO05D006170 3.1e-06 57.4 343 24.8
Gorai.009G221700 Gossypium raimondii HOM05D005471 ORTHO05D006170 4.1e-06 57.0 331 24.5
Gohir.D05G215000 Gossypium hirsutum HOM05D005471 ORTHO05D006170 5.4e-06 56.6 335 24.5
Potri.014G013500 Populus trichocarpa HOM05D005471 ORTHO05D006170 5.4e-06 56.6 151 29.1
Os07g0248800 Oryza sativa ssp. japonica HOM05D005471 ORTHO05D006170 9.1e-06 55.8 304 23.0


User provided reference genes

Program Settings