Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre07.g313800 Chlamydomonas reinhardtii HOM05D004438 ORTHO05D005256 4.6e-58 227.6 111 100.0
Aqoxy2G01099 Aquilegia oxysepala HOM05D004438 ORTHO05D005256 2.2e-20 102.4 79 57.0
Nn5g29898 Nelumbo nucifera HOM05D004438 ORTHO05D005256 2.2e-20 102.4 79 58.2
Potri.002G105400 Populus trichocarpa HOM05D004438 ORTHO05D005256 4.9e-20 101.3 81 58.0
HPP92_015825 Vanilla planifolia HOM05D004438 ORTHO05D005256 4.9e-20 101.3 79 57.0
Manes.10G131700 Manihot esculenta HOM05D004438 ORTHO05D005256 6.5e-20 100.9 81 56.8
CAN.G475.35 Capsicum annuum HOM05D004438 ORTHO05D005256 8.4e-20 100.5 77 58.4
Solyc04g076260.2 Solanum lycopersicum HOM05D004438 ORTHO05D005256 8.4e-20 100.5 77 58.4
Sopen00g011470 Solanum pennellii HOM05D004438 ORTHO05D005256 8.4e-20 100.5 77 58.4
Ah.02g126620 Amaranthus hybridus HOM05D004438 ORTHO05D005256 1.1e-19 100.1 81 55.6
AagrBONN_evm.TU.Sc2ySwM_344.1988 Anthoceros agrestis HOM05D004438 ORTHO05D005256 1.1e-19 100.1 77 55.8
Cc10_g15830 Coffea canephora HOM05D004438 ORTHO05D005256 1.1e-19 100.1 80 57.5
Eucgr.F02140 Eucalyptus grandis HOM05D004438 ORTHO05D005256 1.4e-19 99.8 79 58.2
Mapoly0031s0095 Marchantia polymorpha HOM05D004438 ORTHO05D005256 1.4e-19 99.8 82 52.4
Nitab4.5_0000131g0360 Nicotiana tabacum HOM05D004438 ORTHO05D005256 1.4e-19 99.8 77 58.4
Nitab4.5_0003709g0100 Nicotiana tabacum HOM05D004438 ORTHO05D005256 1.4e-19 99.8 77 58.4
AUR62027160 Chenopodium quinoa HOM05D004438 ORTHO05D005256 1.9e-19 99.4 72 61.1
AUR62044399 Chenopodium quinoa HOM05D004438 ORTHO05D005256 1.9e-19 99.4 72 61.1
Gohir.A11G053800 Gossypium hirsutum HOM05D004438 ORTHO05D005256 1.9e-19 99.4 82 58.5
Peaxi162Scf00979g00008 Petunia axillaris HOM05D004438 ORTHO05D005256 1.9e-19 99.4 77 58.4
Sc23g0000680 Simmondsia chinensis HOM05D004438 ORTHO05D005256 1.9e-19 99.4 78 56.4
PGSC0003DMG400009364 Solanum tuberosum HOM05D004438 ORTHO05D005256 1.9e-19 99.4 77 58.4
TAR625G0091 Trochodendron aralioides HOM05D004438 ORTHO05D005256 1.9e-19 99.4 79 57.0
Pp3c22_12110 Physcomitrium patens HOM05D004438 ORTHO05D005256 3.2e-19 98.6 80 51.2
Ah.03g137490 Amaranthus hybridus HOM05D004438 ORTHO05D005256 4.2e-19 98.2 81 53.1
Potri.005G156400 Populus trichocarpa HOM05D004438 ORTHO05D005256 4.2e-19 98.2 78 57.7
RcHm_v2.0_Chr2g0117091 Rosa chinensis HOM05D004438 ORTHO05D005256 4.2e-19 98.2 81 55.6
TWI56G0149 Tripterygium wilfordii HOM05D004438 ORTHO05D005256 4.2e-19 98.2 78 59.0
Atru.chr13.1020 Acer truncatum HOM05D004438 ORTHO05D005256 5.5e-19 97.8 77 57.1
Aa31LG1G17110 Aethionema arabicum HOM05D004438 ORTHO05D005256 5.5e-19 97.8 81 55.6
Haze_25054 Corylus avellana HOM05D004438 ORTHO05D005256 5.5e-19 97.8 81 55.6
DCAR_009565 Daucus carota HOM05D004438 ORTHO05D005256 5.5e-19 97.8 83 51.8
DCAR_009568 Daucus carota HOM05D004438 ORTHO05D005256 5.5e-19 97.8 83 51.8
ECA233G2293 Erigeron canadensis HOM05D004438 ORTHO05D005256 5.5e-19 97.8 78 56.4
Migut.G00404 Erythranthe guttata HOM05D004438 ORTHO05D005256 5.5e-19 97.8 79 55.7
FvH4_1g22770 Fragaria vesca HOM05D004438 ORTHO05D005256 5.5e-19 97.8 81 55.6
FAN19G1036 Fragaria x ananassa HOM05D004438 ORTHO05D005256 5.5e-19 97.8 81 55.6
FAN23G1009 Fragaria x ananassa HOM05D004438 ORTHO05D005256 5.5e-19 97.8 81 55.6
FAN26G1829 Fragaria x ananassa HOM05D004438 ORTHO05D005256 5.5e-19 97.8 81 55.6
FAN28G0942 Fragaria x ananassa HOM05D004438 ORTHO05D005256 5.5e-19 97.8 81 55.6
PRCOL_00001176 Prasinoderma coloniale HOM05D004438 ORTHO05D005256 5.5e-19 97.8 73 61.6
SEGI_35678 Sequoiadendron giganteum HOM05D004438 ORTHO05D005256 5.5e-19 97.8 79 53.2
Thecc.01G114400 Theobroma cacao HOM05D004438 ORTHO05D005256 5.5e-19 97.8 79 55.7
ATR1132G028 Amborella trichopoda HOM05D004438 ORTHO05D005256 7.1e-19 97.4 74 58.1
Sed0014495 Sechium edule HOM05D004438 ORTHO05D005256 7.1e-19 97.4 79 55.7
ClCG01G016040 Citrullus lanatus HOM05D004438 ORTHO05D005256 9.3e-19 97.1 81 54.3
Gohir.A10G084200 Gossypium hirsutum HOM05D004438 ORTHO05D005256 9.3e-19 97.1 78 55.1
Gorai.011G114100 Gossypium raimondii HOM05D004438 ORTHO05D005256 9.3e-19 97.1 78 55.1
MBI11_g03707_MAGBIO Magnolia biondii HOM05D004438 ORTHO05D005256 9.3e-19 97.1 79 54.4
MD15G1331400 Malus domestica HOM05D004438 ORTHO05D005256 9.3e-19 97.1 80 55.0
GSVIVG01009169001 Vitis vinifera HOM05D004438 ORTHO05D005256 9.3e-19 97.1 79 54.4
CSS0020413 Camellia sinensis var. sinensis HOM05D004438 ORTHO05D005256 1.2e-18 96.7 79 55.7
COL.COLO4_11000 Corchorus olitorius HOM05D004438 ORTHO05D005256 1.2e-18 96.7 79 55.7
Migut.N00230 Erythranthe guttata HOM05D004438 ORTHO05D005256 1.2e-18 96.7 81 54.3
Gohir.A11G197600 Gossypium hirsutum HOM05D004438 ORTHO05D005256 1.2e-18 96.7 79 55.7
Gohir.D10G104600 Gossypium hirsutum HOM05D004438 ORTHO05D005256 1.2e-18 96.7 78 55.1
Gorai.007G245000 Gossypium raimondii HOM05D004438 ORTHO05D005256 1.2e-18 96.7 79 55.7
MD03G1238400 Malus domestica HOM05D004438 ORTHO05D005256 1.2e-18 96.7 80 55.0
Prupe.4G171500 Prunus persica HOM05D004438 ORTHO05D005256 1.2e-18 96.7 80 55.0
Actinidia06107 Actinidia chinensis HOM05D004438 ORTHO05D005256 1.6e-18 96.3 79 55.7
MELO3C007474.2 Cucumis melo HOM05D004438 ORTHO05D005256 1.6e-18 96.3 79 54.4
Duzib187G1770 Durio zibethinus HOM05D004438 ORTHO05D005256 1.6e-18 96.3 79 55.7
MD15G1340400 Malus domestica HOM05D004438 ORTHO05D005256 1.6e-18 96.3 85 54.1
THA.LOC104819312 Tarenaya hassleriana HOM05D004438 ORTHO05D005256 1.6e-18 96.3 81 55.6
TWI74G1039 Tripterygium wilfordii HOM05D004438 ORTHO05D005256 1.6e-18 96.3 74 58.1
CsaV3_6G042320 Cucumis sativus L. HOM05D004438 ORTHO05D005256 2.1e-18 95.9 79 54.4
Dinv42684 Davidia involucrata HOM05D004438 ORTHO05D005256 2.1e-18 95.9 79 54.4
Thhalv10005124m.g Eutrema salsugineum HOM05D004438 ORTHO05D005256 2.1e-18 95.9 81 55.6
Glyma.01G200000 Glycine max HOM05D004438 ORTHO05D005256 2.1e-18 95.9 81 54.3
PSO541G1989 Papaver somniferum HOM05D004438 ORTHO05D005256 2.1e-18 95.9 79 54.4
PSO675G7198 Papaver somniferum HOM05D004438 ORTHO05D005256 2.1e-18 95.9 79 54.4
Prupe.6G170300 Prunus persica HOM05D004438 ORTHO05D005256 2.1e-18 95.9 81 54.3
QL06p031963 Quercus lobata HOM05D004438 ORTHO05D005256 2.1e-18 95.9 79 54.4
Sed0003177 Sechium edule HOM05D004438 ORTHO05D005256 2.1e-18 95.9 79 54.4
AagrBONN_evm.TU.Sc2ySwM_117.295 Anthoceros agrestis HOM05D004438 ORTHO05D005256 2.7e-18 95.5 74 55.4
AT5G64816 Arabidopsis thaliana HOM05D004438 ORTHO05D005256 2.7e-18 95.5 81 54.3
MSTRG.9937 Avicennia marina HOM05D004438 ORTHO05D005256 2.7e-18 95.5 79 54.4
A06p31610 Brassica napus HOM05D004438 ORTHO05D005256 2.7e-18 95.5 81 54.3
Cpa.g.sc21.8 Carica papaya HOM05D004438 ORTHO05D005256 2.7e-18 95.5 72 59.7
Ciclev10002841m.g Citrus clementina HOM05D004438 ORTHO05D005256 2.7e-18 95.5 77 55.8
Gohir.D11G057300 Gossypium hirsutum HOM05D004438 ORTHO05D005256 2.7e-18 95.5 82 57.3
Peaxi162Scf00106g00162 Petunia axillaris HOM05D004438 ORTHO05D005256 2.7e-18 95.5 81 53.1
Phvul.L002244 Phaseolus vulgaris HOM05D004438 ORTHO05D005256 2.7e-18 95.5 80 55.0
QL01p009111 Quercus lobata HOM05D004438 ORTHO05D005256 2.7e-18 95.5 72 58.3
SGA_v2.0_scaffold308G48110 Striga asiatica HOM05D004438 ORTHO05D005256 2.7e-18 95.5 79 54.4
SGA_v2.0_scaffold79G25619 Striga asiatica HOM05D004438 ORTHO05D005256 2.7e-18 95.5 79 54.4
THA.LOC104799304 Tarenaya hassleriana HOM05D004438 ORTHO05D005256 2.7e-18 95.5 74 58.1
TPR.G28848 Trifolium pratense HOM05D004438 ORTHO05D005256 2.7e-18 95.5 80 55.0
VMungo0720G0202 Vigna mungo HOM05D004438 ORTHO05D005256 2.7e-18 95.5 80 55.0
Cfa002762 Carpinus fangiana HOM05D004438 ORTHO05D005256 3.5e-18 95.1 74 58.1
CiPaw.03G133700 Carya illinoinensis HOM05D004438 ORTHO05D005256 3.5e-18 95.1 79 53.2
Lj5g0016992 Lotus japonicus HOM05D004438 ORTHO05D005256 3.5e-18 95.1 80 55.0
Psat7g208520 Pisum sativum HOM05D004438 ORTHO05D005256 3.5e-18 95.1 80 53.8
BcaB02g09832 Brassica carinata HOM05D004438 ORTHO05D005256 4.6e-18 94.7 81 54.3
BcaC01g02715 Brassica carinata HOM05D004438 ORTHO05D005256 4.6e-18 94.7 81 54.3
BolC3t18395H Brassica oleracea HOM05D004438 ORTHO05D005256 4.6e-18 94.7 81 54.3
Carub.0008s2564 Capsella rubella HOM05D004438 ORTHO05D005256 4.6e-18 94.7 81 54.3
CARHR278820 Cardamine hirsuta HOM05D004438 ORTHO05D005256 4.6e-18 94.7 81 54.3
Glyma.20G200800 Glycine max HOM05D004438 ORTHO05D005256 4.6e-18 94.7 81 53.1
HanXRQChr12g0372061 Helianthus annuus HOM05D004438 ORTHO05D005256 4.6e-18 94.7 77 54.5
Oeu027202.1 Olea europaea HOM05D004438 ORTHO05D005256 4.6e-18 94.7 79 54.4
SalBow2G1806 Salvia bowleyana HOM05D004438 ORTHO05D005256 4.6e-18 94.7 72 58.3
Sp2g27890 Schrenkiella parvula HOM05D004438 ORTHO05D005256 4.6e-18 94.7 81 54.3
TAR381G0625 Trochodendron aralioides HOM05D004438 ORTHO05D005256 4.6e-18 94.7 79 53.2
TAR625G0287 Trochodendron aralioides HOM05D004438 ORTHO05D005256 4.6e-18 94.7 79 53.2
vmacro18638 Vaccinium macrocarpon HOM05D004438 ORTHO05D005256 4.6e-18 94.7 79 53.2
Dinv19477 Davidia involucrata HOM05D004438 ORTHO05D005256 6.0e-18 94.4 79 53.2
Glyma.10G190000 Glycine max HOM05D004438 ORTHO05D005256 6.0e-18 94.4 81 54.3
Lsat_1_v5_gn_8_150501 Lactuca sativa HOM05D004438 ORTHO05D005256 6.0e-18 94.4 77 54.5
Lalb_Chr02g0150651 Lupinus albus HOM05D004438 ORTHO05D005256 6.0e-18 94.4 74 58.1
Medtr1g073620 Medicago truncatula HOM05D004438 ORTHO05D005256 6.0e-18 94.4 80 53.8
Nitab4.5_0004977g0030 Nicotiana tabacum HOM05D004438 ORTHO05D005256 6.0e-18 94.4 79 53.2
Psat6g129880 Pisum sativum HOM05D004438 ORTHO05D005256 6.0e-18 94.4 79 53.2
SHI31196 Sapria himalayana HOM05D004438 ORTHO05D005256 6.0e-18 94.4 79 55.7
Solyc04g051710.2 Solanum lycopersicum HOM05D004438 ORTHO05D005256 6.0e-18 94.4 72 56.9
Sopen04g023090 Solanum pennellii HOM05D004438 ORTHO05D005256 6.0e-18 94.4 72 56.9
PGSC0003DMG400031197 Solanum tuberosum HOM05D004438 ORTHO05D005256 6.0e-18 94.4 72 56.9
AL8G42290 Arabidopsis lyrata HOM05D004438 ORTHO05D005256 7.9e-18 94.0 80 53.8
C03p61350 Brassica napus HOM05D004438 ORTHO05D005256 7.9e-18 94.0 80 53.8
BraA06t26098Z Brassica rapa HOM05D004438 ORTHO05D005256 7.9e-18 94.0 80 53.8
Os03g0185600 Oryza sativa ssp. japonica HOM05D004438 ORTHO05D005256 7.9e-18 94.0 74 56.8
TWI53G0984 Tripterygium wilfordii HOM05D004438 ORTHO05D005256 7.9e-18 94.0 74 56.8
Zm00001eb006400 Zea mays HOM05D004438 ORTHO05D005256 7.9e-18 94.0 74 56.8
CAN.G344.10 Capsicum annuum HOM05D004438 ORTHO05D005256 1.0e-17 93.6 79 51.9
Rhsim10G0149000 Rhododendron simsii HOM05D004438 ORTHO05D005256 1.0e-17 93.6 72 56.9
Zm00001eb401580 Zea mays HOM05D004438 ORTHO05D005256 1.0e-17 93.6 74 56.8
CANSAT01G2942 Cannabis sativa HOM05D004438 ORTHO05D005256 1.3e-17 93.2 74 56.8
SalBow3G3218 Salvia bowleyana HOM05D004438 ORTHO05D005256 1.3e-17 93.2 72 58.3
Nn1g08461 Nelumbo nucifera HOM05D004438 ORTHO05D005256 2.3e-17 92.4 66 63.6
Pp3c19_18370 Physcomitrium patens HOM05D004438 ORTHO05D005256 2.3e-17 92.4 77 49.4
SEGI_36857 Sequoiadendron giganteum HOM05D004438 ORTHO05D005256 2.3e-17 92.4 74 56.8
Gohir.D11G231900 Gossypium hirsutum HOM05D004438 ORTHO05D005256 3.0e-17 92.0 79 54.4
unitig_699.g19132 Utricularia gibba HOM05D004438 ORTHO05D005256 3.9e-17 91.7 72 56.9
FAN16G1755 Fragaria x ananassa HOM05D004438 ORTHO05D005256 5.1e-17 91.3 74 56.8
MCO08G336 Micromonas commoda HOM05D004438 ORTHO05D005256 1.1e-16 90.1 72 56.9
COL.COLO4_35234 Corchorus olitorius HOM05D004438 ORTHO05D005256 1.9e-16 89.4 77 54.5
Nitab4.5_0000184g0290 Nicotiana tabacum HOM05D004438 ORTHO05D005256 1.9e-16 89.4 77 53.2
RcHm_v2.0_Chr5g0031621 Rosa chinensis HOM05D000965 ORTHO05D000842 1.9e-16 89.4 81 48.1
CDE02G2078 Ceratophyllum demersum HOM05D004438 ORTHO05D005256 5.7e-16 87.8 65 61.5
FAN21G3234 Fragaria x ananassa HOM05D000965 ORTHO05D000842 7.4e-16 87.4 68 57.4
Gorai.007G062500 Gossypium raimondii HOM05D004438 ORTHO05D005256 7.4e-16 87.4 77 55.8
Sabra02G0082700 Salix brachista HOM05D004438 ORTHO05D005256 9.7e-16 87.0 67 61.2
Sc03g0004400 Simmondsia chinensis HOM05D004438 ORTHO05D005256 9.7e-16 87.0 66 57.6
FvH4_3g18771 Fragaria vesca HOM05D004438 ORTHO05D005256 2.2e-15 85.9 68 57.4
FAN11G0727 Fragaria x ananassa HOM05D000965 ORTHO05D000842 2.2e-15 85.9 68 57.4
Sabra05G0119900 Salix brachista HOM05D004438 ORTHO05D005256 2.8e-15 85.5 67 58.2
Lalb_Chr21g0312471 Lupinus albus HOM05D004438 ORTHO05D005256 3.7e-15 85.1 73 56.2
Gohir.1Z049407 Gossypium hirsutum HOM05D004438 ORTHO05D005256 1.8e-14 82.8 72 56.9
EL10Ac6g13106 Beta vulgaris HOM05D004438 ORTHO05D005256 6.9e-14 80.9 65 58.5
Manes.02G145100 Manihot esculenta HOM05D004438 ORTHO05D005256 9.0e-14 80.5 65 56.9
Nitab4.5_0004977g0040 Nicotiana tabacum HOM05D004438 ORTHO05D005256 1.3e-12 76.6 61 57.4
arahy.Tifrunner.gnm1.ann1.7JV24P Arachis hypogaea HOM05D004438 ORTHO05D005256 5.5e-11 71.2 55 60.0
ATR0049G041 Amborella trichopoda HOM05D004438 ORTHO05D005256 1.6e-10 69.7 74 41.9
CSS0009061 Camellia sinensis var. sinensis HOM05D004438 ORTHO05D005256 2.1e-10 69.3 50 64.0
Duzib264G0014 Durio zibethinus HOM05D004438 ORTHO05D005256 5.1e-09 64.7 51 58.8
CSS0034319 Camellia sinensis var. sinensis HOM05D004438 ORTHO05D005256 1.5e-08 63.2 52 57.7
CSS0036861 Camellia sinensis var. sinensis HOM05D004438 ORTHO05D005256 2.8e-07 58.9 58 51.7
Rhsim08G0005900 Rhododendron simsii HOM05D004438 ORTHO05D005256 2.8e-07 58.9 46 58.7
Oeu028520.2 Olea europaea HOM05D004438 ORTHO05D005256 6.3e-07 57.8 93 38.7


User provided reference genes

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