Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre07.g313550 Chlamydomonas reinhardtii HOM05D006927 ORTHO05D009065 1.2e-166 589.7 296 100.0
PRCOL_00002784 Prasinoderma coloniale HOM05D006927 ORTHO05D009065 3.3e-71 272.7 279 49.8
ATR0568G108 Amborella trichopoda HOM05D006927 ORTHO05D009065 1.1e-66 257.7 296 45.3
Zm00001eb208940 Zea mays HOM05D006927 ORTHO05D009065 1.1e-66 257.7 301 45.2
CANSAT25G2771 Cannabis sativa HOM05D006927 ORTHO05D009065 2.5e-66 256.5 259 46.7
FvH4_7g08340 Fragaria vesca HOM05D006927 ORTHO05D009065 4.2e-66 255.8 287 43.2
FAN03G0521 Fragaria x ananassa HOM05D006927 ORTHO05D009065 5.5e-66 255.4 287 43.2
RcHm_v2.0_Chr1g0340711 Rosa chinensis HOM05D006927 ORTHO05D009065 5.5e-66 255.4 299 41.8
Eucgr.D01080 Eucalyptus grandis HOM05D006927 ORTHO05D009065 1.2e-65 254.2 286 44.1
Pp3c20_10810 Physcomitrium patens HOM05D006927 ORTHO05D009065 1.2e-65 254.2 301 43.9
Ah.16g104050 Amaranthus hybridus HOM05D006927 ORTHO05D009065 1.6e-65 253.8 286 44.1
SalBow5G1207 Salvia bowleyana HOM05D006927 ORTHO05D009065 2.1e-65 253.4 290 43.4
Prupe.2G106800 Prunus persica HOM05D006927 ORTHO05D009065 2.7e-65 253.1 289 43.9
Mapoly0110s0034 Marchantia polymorpha HOM05D006927 ORTHO05D009065 7.9e-65 251.5 292 43.8
AagrBONN_evm.TU.Sc2ySwM_228.4179 Anthoceros agrestis HOM05D006927 ORTHO05D009065 1.8e-64 250.4 308 43.5
Os02g0129900 Oryza sativa ssp. japonica HOM05D006927 ORTHO05D009065 2.3e-64 250.0 299 43.5
FAN10G1940 Fragaria x ananassa HOM05D006927 ORTHO05D009065 3.9e-64 249.2 295 42.4
GSVIVG01019324001 Vitis vinifera HOM05D006927 ORTHO05D009065 5.1e-64 248.8 291 44.0
Thhalv10014137m.g Eutrema salsugineum HOM05D006927 ORTHO05D009065 6.7e-64 248.4 300 41.3
QL04p053394 Quercus lobata HOM05D006927 ORTHO05D009065 6.7e-64 248.4 284 44.7
BcaC03g13532 Brassica carinata HOM05D006927 ORTHO05D009065 8.7e-64 248.1 295 42.4
HanXRQChr01g0018481 Helianthus annuus HOM05D006927 ORTHO05D009065 8.7e-64 248.1 296 44.3
arahy.Tifrunner.gnm1.ann1.DTN3WJ Arachis hypogaea HOM05D006927 ORTHO05D009065 1.5e-63 247.3 292 43.5
arahy.Tifrunner.gnm1.ann1.A7PVHI Arachis hypogaea HOM05D006927 ORTHO05D009065 1.9e-63 246.9 292 43.8
Potri.013G070700 Populus trichocarpa HOM05D006927 ORTHO05D009065 1.9e-63 246.9 283 43.5
Sp6g26550 Schrenkiella parvula HOM05D006927 ORTHO05D009065 1.9e-63 246.9 299 41.8
Sc11g0005590 Simmondsia chinensis HOM05D006927 ORTHO05D009065 2.5e-63 246.5 284 44.0
Cc02_g26470 Coffea canephora HOM05D006927 ORTHO05D009065 3.3e-63 246.1 291 41.6
Nitab4.5_0006785g0060 Nicotiana tabacum HOM05D006927 ORTHO05D009065 3.3e-63 246.1 280 43.9
TWI34G1327 Tripterygium wilfordii HOM05D006927 ORTHO05D009065 4.3e-63 245.7 296 42.6
Dinv43961 Davidia involucrata HOM05D006927 ORTHO05D009065 5.7e-63 245.4 287 43.6
Duzib177G0162 Durio zibethinus HOM05D006927 ORTHO05D009065 7.4e-63 245.0 297 42.1
Gohir.A11G224222 Gossypium hirsutum HOM05D006927 ORTHO05D009065 7.4e-63 245.0 296 41.6
Medtr3g118320 Medicago truncatula HOM05D006927 ORTHO05D009065 7.4e-63 245.0 284 42.6
FAN06G3009 Fragaria x ananassa HOM05D006927 ORTHO05D009065 9.6e-63 244.6 305 40.7
DCAR_001906 Daucus carota HOM05D006927 ORTHO05D009065 1.3e-62 244.2 287 44.3
Lsat_1_v5_gn_1_89341 Lactuca sativa HOM05D006927 ORTHO05D009065 1.6e-62 243.8 282 44.0
MD07G1081500 Malus domestica HOM05D006927 ORTHO05D009065 1.6e-62 243.8 283 42.0
Manes.09G133500 Manihot esculenta HOM05D006927 ORTHO05D009065 1.6e-62 243.8 295 42.0
Solyc01g081480.3 Solanum lycopersicum HOM05D006927 ORTHO05D009065 1.6e-62 243.8 296 41.6
THA.LOC104820815 Tarenaya hassleriana HOM05D006927 ORTHO05D009065 1.6e-62 243.8 298 41.9
Gorai.007G250200 Gossypium raimondii HOM05D006927 ORTHO05D009065 2.1e-62 243.4 296 41.6
VMungo0251G3349 Vigna mungo HOM05D006927 ORTHO05D009065 2.1e-62 243.4 284 43.0
CAN.G992.25 Capsicum annuum HOM05D006927 ORTHO05D009065 2.8e-62 243.0 291 41.9
CsaV3_6G006390 Cucumis sativus L. HOM05D006927 ORTHO05D009065 2.8e-62 243.0 286 42.3
MBI04_g06278_MAGBIO Magnolia biondii HOM05D006927 ORTHO05D009065 2.8e-62 243.0 297 43.8
Nitab4.5_0000792g0130 Nicotiana tabacum HOM05D006927 ORTHO05D009065 2.8e-62 243.0 280 42.9
Sopen01g033040 Solanum pennellii HOM05D006927 ORTHO05D009065 2.8e-62 243.0 296 41.2
Thecc.05G234500 Theobroma cacao HOM05D006927 ORTHO05D009065 2.8e-62 243.0 283 43.1
AT5G17670 Arabidopsis thaliana HOM05D006927 ORTHO05D009065 3.7e-62 242.7 293 42.3
Peaxi162Scf00907g00025 Petunia axillaris HOM05D006927 ORTHO05D009065 3.7e-62 242.7 277 43.3
A02p04400 Brassica napus HOM05D006927 ORTHO05D009065 4.8e-62 242.3 304 41.8
C02p09230 Brassica napus HOM05D006927 ORTHO05D009065 4.8e-62 242.3 299 41.8
PGSC0003DMG400031110 Solanum tuberosum HOM05D006927 ORTHO05D009065 4.8e-62 242.3 282 43.3
CSS0031880 Camellia sinensis var. sinensis HOM05D006927 ORTHO05D009065 8.2e-62 241.5 283 41.7
AL6G28760 Arabidopsis lyrata HOM05D006927 ORTHO05D009065 1.1e-61 241.1 297 41.4
CSS0044270 Camellia sinensis var. sinensis HOM05D006927 ORTHO05D009065 1.1e-61 241.1 283 41.7
Carub.0006s1591 Capsella rubella HOM05D006927 ORTHO05D009065 1.4e-61 240.7 300 41.7
Cpa.g.sc73.27 Carica papaya HOM05D006927 ORTHO05D009065 1.4e-61 240.7 293 41.3
MELO3C022480.2 Cucumis melo HOM05D006927 ORTHO05D009065 2.4e-61 240.0 287 41.8
Rhsim07G0047700 Rhododendron simsii HOM05D006927 ORTHO05D009065 2.4e-61 240.0 300 40.7
Migut.B01420 Erythranthe guttata HOM05D006927 ORTHO05D009065 5.3e-61 238.8 279 42.3
Phvul.002G317100 Phaseolus vulgaris HOM05D006927 ORTHO05D009065 9.0e-61 238.0 280 43.9
ECA248G1152 Erigeron canadensis HOM05D006927 ORTHO05D009065 1.2e-60 237.7 291 42.3
PGR083G0610 Punica granatum HOM05D006927 ORTHO05D009065 1.2e-60 237.7 280 43.6
Sed0018978 Sechium edule HOM05D006927 ORTHO05D009065 1.2e-60 237.7 285 41.8
TAR629G3441 Trochodendron aralioides HOM05D006927 ORTHO05D009065 1.5e-60 237.3 281 42.7
Ciclev10032190m.g Citrus clementina HOM05D006927 ORTHO05D009065 4.5e-60 235.7 284 41.9
Lj1g0006598 Lotus japonicus HOM05D006927 ORTHO05D009065 1.3e-59 234.2 286 42.3
SMO141G0137 Selaginella moellendorffii HOM05D006927 ORTHO05D009065 1.7e-59 233.8 277 41.2
Glyma.06G001500 Glycine max HOM05D006927 ORTHO05D009065 2.2e-59 233.4 282 42.2
Lj9A617T58 Lonicera japonica HOM05D006927 ORTHO05D009065 2.2e-59 233.4 278 42.8
Lalb_Chr08g0246751 Lupinus albus HOM05D006927 ORTHO05D009065 2.2e-59 233.4 271 42.8
Aqoxy1G00986 Aquilegia oxysepala HOM05D006927 ORTHO05D009065 2.9e-59 233.0 313 39.6
SGA_v2.0_scaffold98G29375 Striga asiatica HOM05D006927 ORTHO05D009065 6.5e-59 231.9 272 45.6
TPR.G38566 Trifolium pratense HOM05D006927 ORTHO05D009065 8.5e-59 231.5 277 43.7
MCO09G674 Micromonas commoda HOM05D006927 ORTHO05D009065 1.1e-58 231.1 251 46.2
PSO675G5316 Papaver somniferum HOM05D006927 ORTHO05D009065 4.2e-58 229.2 296 39.2
Aa31LG11G11960 Aethionema arabicum HOM05D006927 ORTHO05D009065 2.1e-57 226.9 325 38.2
ClCG06G000620 Citrullus lanatus HOM05D006927 ORTHO05D009065 3.6e-57 226.1 312 39.7
Haze_15787 Corylus avellana HOM05D006927 ORTHO05D009065 6.1e-57 225.3 298 40.6
Ca_15418_v3 Cicer arietinum L. HOM05D006927 ORTHO05D009065 3.0e-56 223.0 269 43.5
Atru.chr2.1634 Acer truncatum HOM05D006927 ORTHO05D009065 2.5e-55 219.9 321 36.1
CDE02G0279 Ceratophyllum demersum HOM05D006927 ORTHO05D009065 1.8e-53 213.8 293 40.6
COL.COLO4_21417 Corchorus olitorius HOM05D006927 ORTHO05D009065 1.3e-51 207.6 271 40.2
vmacro13598 Vaccinium macrocarpon HOM05D006927 ORTHO05D009065 1.2e-49 201.1 388 32.0
FAN01G0804 Fragaria x ananassa HOM05D006927 ORTHO05D009065 2.7e-49 199.9 283 38.9
MD02G1231900 Malus domestica HOM05D006927 ORTHO05D009065 3.7e-46 189.5 251 39.0
Sabra13G0061600 Salix brachista HOM05D006927 ORTHO05D009065 1.7e-43 180.6 301 35.9
Nn1g09344 Nelumbo nucifera HOM05D006927 ORTHO05D009065 9.7e-39 164.9 186 43.5
BolC2t06832H Brassica oleracea HOM05D006927 ORTHO05D009065 1.3e-38 164.5 179 44.7
Oeu034881.1 Olea europaea HOM05D006927 ORTHO05D009065 1.7e-38 164.1 180 44.4
Psat5g000960 Pisum sativum HOM05D006927 ORTHO05D009065 1.7e-38 164.1 176 43.8
BraA02t05404Z Brassica rapa HOM05D006927 ORTHO05D009065 2.8e-38 163.3 181 44.2
Dinv43521 Davidia involucrata HOM05D006927 ORTHO05D009065 9.1e-37 158.3 169 45.6
MCO02G275 Micromonas commoda HOM05D006927 ORTHO05D044296 9.1e-37 158.3 295 36.3
CiPaw.02G047300 Carya illinoinensis HOM05D006927 ORTHO05D009065 1.7e-35 154.1 163 44.8
HPP92_025548 Vanilla planifolia HOM05D006927 ORTHO05D009065 3.2e-34 149.8 171 43.3
Actinidia31733 Actinidia chinensis HOM05D006927 ORTHO05D009065 6.7e-32 142.1 174 39.7
Cre01.g025150 Chlamydomonas reinhardtii HOM05D006927 ORTHO05D044296 4.4e-31 139.4 337 31.5
Aqoxy116s007 Aquilegia oxysepala HOM05D006927 ORTHO05D009065 1.3e-30 137.9 232 34.9
CARHR195510 Cardamine hirsuta HOM05D006927 ORTHO05D009065 2.2e-27 127.1 160 41.9
Gohir.D11G237100 Gossypium hirsutum HOM05D006927 ORTHO05D009065 2.7e-25 120.2 134 43.3
unitig_26.g8847 Utricularia gibba HOM05D006927 ORTHO05D009065 4.7e-25 119.4 123 46.3
unitig_26.g8846 Utricularia gibba HOM05D006927 ORTHO05D009065 3.8e-19 99.8 100 50.0
Thecc.05G234900 Theobroma cacao HOM05D006927 ORTHO05D009065 5.7e-15 85.9 60 58.3
SEGI_38351 Sequoiadendron giganteum HOM05D006927 ORTHO05D009065 1.1e-13 81.6 67 53.7
Actinidia34774 Actinidia chinensis HOM05D006927 ORTHO05D009065 3.1e-13 80.1 71 49.3
AagrBONN_evm.TU.Sc2ySwM_368.1936 Anthoceros agrestis HOM05D006927 ORTHO05D071668 2.0e-12 77.4 216 29.2
BcaB08g36753 Brassica carinata HOM05D006927 ORTHO05D009065 1.0e-08 65.1 54 51.9


User provided reference genes

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