Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre07.g312100 Chlamydomonas reinhardtii HOM05D004754 ORTHO05D005566 0.0e+00 1192.2 637 100.0
Zm00001eb126310 Zea mays HOM05D004754 ORTHO05D005566 5.7e-28 130.2 428 31.3
PRCOL_00002688 Prasinoderma coloniale HOM05D004754 ORTHO05D005566 1.1e-26 125.9 367 30.2
unitig_21.g20734 Utricularia gibba HOM05D004754 ORTHO05D005566 1.2e-25 122.5 290 31.4
MCO03G595 Micromonas commoda HOM05D004754 ORTHO05D005566 1.6e-25 122.1 302 32.1
Cc02_g19240 Coffea canephora HOM05D004754 ORTHO05D005566 2.0e-25 121.7 405 26.9
Pp3c20_22950 Physcomitrium patens HOM05D004754 ORTHO05D005566 2.7e-25 121.3 410 24.6
AagrBONN_evm.TU.Sc2ySwM_344.1746 Anthoceros agrestis HOM05D004754 ORTHO05D005566 5.9e-25 120.2 459 24.6
AagrBONN_evm.TU.Sc2ySwM_228.5754 Anthoceros agrestis HOM05D004754 ORTHO05D005566 7.7e-25 119.8 405 25.7
Sed0000755 Sechium edule HOM05D004754 ORTHO05D005566 8.5e-24 116.3 405 27.4
Prupe.3G237900 Prunus persica HOM05D004754 ORTHO05D005566 4.2e-23 114.0 412 26.2
MD17G1076300 Malus domestica HOM05D004754 ORTHO05D005566 5.5e-23 113.6 405 26.4
Cfa020535 Carpinus fangiana HOM05D004754 ORTHO05D005566 7.2e-23 113.2 407 26.0
ECA240G2987 Erigeron canadensis HOM05D004754 ORTHO05D005566 7.2e-23 113.2 408 25.0
Prupe.1G099600 Prunus persica HOM05D004754 ORTHO05D005566 1.6e-22 112.1 410 26.6
TAR624G1057 Trochodendron aralioides HOM05D004754 ORTHO05D005566 2.7e-22 111.3 408 27.7
PGR031G3887 Punica granatum HOM05D004754 ORTHO05D005566 3.6e-22 110.9 408 27.5
Sopen01g049820 Solanum pennellii HOM05D004754 ORTHO05D005566 3.6e-22 110.9 407 26.5
CiPaw.12G121800 Carya illinoinensis HOM05D004754 ORTHO05D005566 8.0e-22 109.8 407 27.0
Hund19582 Selenicereus undatus HOM05D004754 ORTHO05D005566 1.0e-21 109.4 412 25.7
SGA_v2.0_scaffold172G38987 Striga asiatica HOM05D004754 ORTHO05D005566 1.0e-21 109.4 406 26.4
CANSAT64G0220 Cannabis sativa HOM05D004754 ORTHO05D005566 1.4e-21 109.0 406 27.1
MBI09_g11913_MAGBIO Magnolia biondii HOM05D004754 ORTHO05D005566 1.4e-21 109.0 414 25.8
SMO144G0026 Selaginella moellendorffii HOM05D004754 ORTHO05D005566 1.4e-21 109.0 284 30.3
MBI10_g08558_MAGBIO Magnolia biondii HOM05D004754 ORTHO05D005566 2.3e-21 108.2 414 25.6
SalBow6G1352 Salvia bowleyana HOM05D004754 ORTHO05D005566 2.3e-21 108.2 271 29.9
Oeu018596.1 Olea europaea HOM05D004754 ORTHO05D005566 3.0e-21 107.8 412 25.5
TAR626G0708 Trochodendron aralioides HOM05D004754 ORTHO05D005566 4.0e-21 107.5 408 26.7
vmacro03406 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 4.0e-21 107.5 407 25.6
MSTRG.16715 Avicennia marina HOM05D004754 ORTHO05D005566 5.2e-21 107.1 294 29.3
AUR62008508 Chenopodium quinoa HOM05D004754 ORTHO05D005566 5.2e-21 107.1 274 29.9
ClCG03G006380 Citrullus lanatus HOM05D004754 ORTHO05D005566 5.2e-21 107.1 416 26.2
Ah.02g113940 Amaranthus hybridus HOM05D004754 ORTHO05D005566 6.8e-21 106.7 412 25.0
CSS0038452 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 6.8e-21 106.7 408 25.5
Dinv15895 Davidia involucrata HOM05D004754 ORTHO05D005566 6.8e-21 106.7 410 25.9
CSS0007960 Camellia sinensis var. sinensis HOM05D004754 ORTHO05D005566 8.8e-21 106.3 408 25.5
CsaV3_1G039230 Cucumis sativus L. HOM05D004754 ORTHO05D005566 8.8e-21 106.3 309 28.2
Dinv32196 Davidia involucrata HOM05D004754 ORTHO05D005566 8.8e-21 106.3 407 26.0
Lalb_Chr12g0204311 Lupinus albus HOM05D004754 ORTHO05D005566 8.8e-21 106.3 405 25.2
Rhsim13G0119600 Rhododendron simsii HOM05D004754 ORTHO05D005566 8.8e-21 106.3 406 24.6
Aqoxy7G03057 Aquilegia oxysepala HOM05D004754 ORTHO05D005566 1.2e-20 105.9 274 28.8
CAN.G1231.9 Capsicum annuum HOM05D004754 ORTHO05D005566 1.2e-20 105.9 407 26.5
CAN.G3385.2 Capsicum annuum HOM05D004754 ORTHO05D005566 1.2e-20 105.9 407 26.5
AUR62001036 Chenopodium quinoa HOM05D004754 ORTHO05D005566 1.2e-20 105.9 271 29.9
RcHm_v2.0_Chr5g0052651 Rosa chinensis HOM05D004754 ORTHO05D005566 1.2e-20 105.9 285 28.8
RcHm_v2.0_Chr5g0052721 Rosa chinensis HOM05D004754 ORTHO05D005566 1.2e-20 105.9 405 25.7
PGSC0003DMG400025770 Solanum tuberosum HOM05D004754 ORTHO05D005566 1.2e-20 105.9 289 29.4
Ciclev10015850m.g Citrus clementina HOM05D004754 ORTHO05D005566 2.0e-20 105.1 416 25.0
MELO3C015347.2 Cucumis melo HOM05D004754 ORTHO05D005566 2.6e-20 104.8 308 27.9
BcaB01g01919 Brassica carinata HOM05D004754 ORTHO05D005566 3.4e-20 104.4 271 28.8
Carub.0006s3335 Capsella rubella HOM05D004754 ORTHO05D005566 3.4e-20 104.4 407 24.8
AUR62004920 Chenopodium quinoa HOM05D004754 ORTHO05D005566 3.4e-20 104.4 271 29.5
Lj1P1166T28 Lonicera japonica HOM05D004754 ORTHO05D005566 3.4e-20 104.4 414 25.1
Thecc.02G011000 Theobroma cacao HOM05D004754 ORTHO05D005566 3.4e-20 104.4 407 25.8
Migut.B00386 Erythranthe guttata HOM05D004754 ORTHO05D005566 4.4e-20 104.0 271 29.2
QL08p010099 Quercus lobata HOM05D004754 ORTHO05D005566 4.4e-20 104.0 405 24.4
RcHm_v2.0_Chr5g0015381 Rosa chinensis HOM05D004754 ORTHO05D005566 4.4e-20 104.0 405 25.7
GSVIVG01027347001 Vitis vinifera HOM05D004754 ORTHO05D005566 4.4e-20 104.0 421 26.4
Atru.chr10.946 Acer truncatum HOM05D004754 ORTHO05D005566 5.7e-20 103.6 271 28.8
EL10Ac5g11113 Beta vulgaris HOM05D004754 ORTHO05D005566 5.7e-20 103.6 415 25.1
DCAR_005794 Daucus carota HOM05D004754 ORTHO05D005566 5.7e-20 103.6 405 25.9
FAN24G0458 Fragaria x ananassa HOM05D004754 ORTHO05D005566 5.7e-20 103.6 408 27.7
Sp6g03640 Schrenkiella parvula HOM05D004754 ORTHO05D005566 5.7e-20 103.6 406 24.6
Lalb_Chr12g0204271 Lupinus albus HOM05D004754 ORTHO05D005566 7.5e-20 103.2 294 27.6
Sc12g0003000 Simmondsia chinensis HOM05D004754 ORTHO05D005566 7.5e-20 103.2 273 29.3
CARHR252140 Cardamine hirsuta HOM05D004754 ORTHO05D005566 9.8e-20 102.8 414 23.9
Cpa.g.sc17.70 Carica papaya HOM05D004754 ORTHO05D005566 9.8e-20 102.8 414 25.1
CBR_g50844 Chara braunii HOM05D004754 ORTHO05D005566 9.8e-20 102.8 423 26.5
Hma1.2p1_1418F.1_g282250 Hydrangea macrophylla HOM05D004754 ORTHO05D005566 9.8e-20 102.8 405 25.2
PSO675G6933 Papaver somniferum HOM05D004754 ORTHO05D005566 9.8e-20 102.8 406 26.4
ATR0584G072 Amborella trichopoda HOM05D004754 ORTHO05D005566 1.3e-19 102.4 271 28.8
BolC9t53233H Brassica oleracea HOM05D004754 ORTHO05D005566 1.3e-19 102.4 271 28.4
Nitab4.5_0002815g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 1.3e-19 102.4 407 25.8
Oeu010398.1 Olea europaea HOM05D004754 ORTHO05D005566 1.3e-19 102.4 412 25.7
Potri.017G048600 Populus trichocarpa HOM05D004754 ORTHO05D005566 1.3e-19 102.4 417 25.2
THA.LOC104812357 Tarenaya hassleriana HOM05D004754 ORTHO05D005566 1.3e-19 102.4 406 26.8
COL.COLO4_17670 Corchorus olitorius HOM05D004754 ORTHO05D005566 1.7e-19 102.1 408 26.5
Actinidia13483 Actinidia chinensis HOM05D004754 ORTHO05D005566 2.2e-19 101.7 285 29.5
BcaC04g23945 Brassica carinata HOM05D004754 ORTHO05D005566 2.2e-19 101.7 405 25.4
TWI53G1117 Tripterygium wilfordii HOM05D004754 ORTHO05D005566 2.2e-19 101.7 407 24.8
C09p03030 Brassica napus HOM05D004754 ORTHO05D005566 2.8e-19 101.3 405 25.4
Lsat_1_v5_gn_9_95201 Lactuca sativa HOM05D004754 ORTHO05D005566 2.8e-19 101.3 405 25.4
FvH4_2g14961 Fragaria vesca HOM05D004754 ORTHO05D005566 3.7e-19 100.9 408 27.5
Mapoly0049s0079 Marchantia polymorpha HOM05D004754 ORTHO05D005566 4.8e-19 100.5 496 24.2
CDE02G1350 Ceratophyllum demersum HOM05D004754 ORTHO05D005566 6.3e-19 100.1 406 25.1
Haze_09498 Corylus avellana HOM05D004754 ORTHO05D005566 6.3e-19 100.1 287 27.2
QL05p054004 Quercus lobata HOM05D004754 ORTHO05D005566 6.3e-19 100.1 405 24.2
Sc12g0003070 Simmondsia chinensis HOM05D004754 ORTHO05D005566 6.3e-19 100.1 407 25.3
Manes.10G102700 Manihot esculenta HOM05D004754 ORTHO05D005566 8.3e-19 99.8 289 27.7
AT4G05440 Arabidopsis thaliana HOM05D004754 ORTHO05D005566 1.1e-18 99.4 271 26.2
A09p02940 Brassica napus HOM05D004754 ORTHO05D005566 1.1e-18 99.4 271 28.0
BraA09t35937Z Brassica rapa HOM05D004754 ORTHO05D005566 1.1e-18 99.4 271 28.0
Nitab4.5_0005392g0050 Nicotiana tabacum HOM05D004754 ORTHO05D005566 1.1e-18 99.4 408 25.7
VMungo1309G0019 Vigna mungo HOM05D004754 ORTHO05D005566 1.1e-18 99.4 406 26.1
AL6G49030 Arabidopsis lyrata HOM05D004754 ORTHO05D005566 1.4e-18 99.0 418 23.4
Eucgr.K03201 Eucalyptus grandis HOM05D004754 ORTHO05D005566 1.4e-18 99.0 416 25.5
HanXRQChr12g0360561 Helianthus annuus HOM05D004754 ORTHO05D005566 1.4e-18 99.0 412 23.8
PSO210G6921 Papaver somniferum HOM05D004754 ORTHO05D005566 1.4e-18 99.0 274 27.4
Gohir.D08G197900 Gossypium hirsutum HOM05D004754 ORTHO05D005566 1.8e-18 98.6 407 24.6
Gorai.004G208700 Gossypium raimondii HOM05D004754 ORTHO05D005566 1.8e-18 98.6 407 24.6
Psat5g233520 Pisum sativum HOM05D004754 ORTHO05D005566 1.8e-18 98.6 406 25.9
Eucgr.E02475 Eucalyptus grandis HOM05D004754 ORTHO05D005566 3.1e-18 97.8 412 25.5
Gohir.A08G179300 Gossypium hirsutum HOM05D004754 ORTHO05D005566 3.1e-18 97.8 405 24.7
Potri.007G112300 Populus trichocarpa HOM05D004754 ORTHO05D005566 3.1e-18 97.8 408 24.8
Rhsim01G0266600 Rhododendron simsii HOM05D004754 ORTHO05D005566 4.1e-18 97.4 406 24.4
FAN15G1860 Fragaria x ananassa HOM05D004754 ORTHO05D005566 5.4e-18 97.1 408 26.5
SEGI_36860 Sequoiadendron giganteum HOM05D004754 ORTHO05D005566 5.4e-18 97.1 271 27.3
Atru.chr10.952 Acer truncatum HOM05D004754 ORTHO05D005566 7.0e-18 96.7 271 28.4
Ca_02551_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 7.0e-18 96.7 287 26.5
Gorai.013G128400 Gossypium raimondii HOM05D004754 ORTHO05D005566 9.1e-18 96.3 299 27.4
Lsat_1_v5_gn_9_95240 Lactuca sativa HOM05D004754 ORTHO05D005566 9.1e-18 96.3 409 24.2
Lj2g0020778 Lotus japonicus HOM05D004754 ORTHO05D005566 9.1e-18 96.3 271 26.6
TPR.G33233 Trifolium pratense HOM05D004754 ORTHO05D005566 9.1e-18 96.3 271 27.3
Psat0s5166g0080 Pisum sativum HOM05D004754 ORTHO05D005566 1.2e-17 95.9 412 23.8
Sabra07G0091800 Salix brachista HOM05D004754 ORTHO05D005566 1.2e-17 95.9 405 24.4
PSO210G1456 Papaver somniferum HOM05D004754 ORTHO05D005566 1.6e-17 95.5 274 26.6
Aa31LG9G9140 Aethionema arabicum HOM05D004754 ORTHO05D005566 2.7e-17 94.7 285 26.0
Manes.07G037300 Manihot esculenta HOM05D004754 ORTHO05D005566 2.7e-17 94.7 287 27.2
Phvul.009G217100 Phaseolus vulgaris HOM05D004754 ORTHO05D005566 3.5e-17 94.4 271 26.9
Ca_14146_v3 Cicer arietinum L. HOM05D004754 ORTHO05D005566 5.9e-17 93.6 271 27.7
HanXRQChr03g0076141 Helianthus annuus HOM05D004754 ORTHO05D005566 5.9e-17 93.6 332 25.6
Glyma.14G055800 Glycine max HOM05D004754 ORTHO05D005566 7.7e-17 93.2 405 24.2
Duzib248G0043 Durio zibethinus HOM05D004754 ORTHO05D005566 2.2e-16 91.7 407 24.8
Medtr3g010310 Medicago truncatula HOM05D004754 ORTHO05D005566 3.8e-16 90.9 409 24.4
AL6G49110 Arabidopsis lyrata HOM05D004754 ORTHO05D005566 1.1e-15 89.4 292 25.3
Medtr0393s0030 Medicago truncatula HOM05D004754 ORTHO05D005566 1.5e-15 89.0 405 23.5
GSVIVG01021588001 Vitis vinifera HOM05D004754 ORTHO05D005566 1.5e-15 89.0 409 24.9
Thhalv10028820m.g Eutrema salsugineum HOM05D004754 ORTHO05D005566 2.5e-15 88.2 401 23.7
MD09G1087500 Malus domestica HOM05D004754 ORTHO05D005566 1.2e-14 85.9 287 25.4
Atru.chr10.956 Acer truncatum HOM05D004754 ORTHO05D005566 4.4e-12 77.4 201 29.4
vmacro08577 Vaccinium macrocarpon HOM05D004754 ORTHO05D005566 4.4e-12 77.4 196 29.6
AUR62021582 Chenopodium quinoa HOM05D004754 ORTHO05D005566 6.3e-11 73.6 199 28.1
ECA234G3378 Erigeron canadensis HOM05D004754 ORTHO05D000282 3.1e-10 71.2 90 41.1
Sc10g0000250 Simmondsia chinensis HOM05D004754 ORTHO05D005566 7.0e-10 70.1 125 39.2
HanXRQChr11g0343411 Helianthus annuus HOM05D004754 ORTHO05D005566 1.0e-08 66.2 97 38.1
HanXRQChr11g0343421 Helianthus annuus HOM05D004754 ORTHO05D005566 1.0e-08 66.2 97 38.1
Gohir.D13G114400 Gossypium hirsutum HOM05D004754 ORTHO05D005566 1.9e-07 62.0 228 25.4
QL05p054023 Quercus lobata HOM05D004754 ORTHO05D005566 4.3e-07 60.8 62 43.5
HanXRQChr04g0094771 Helianthus annuus HOM05D004754 ORTHO05D005566 4.7e-06 57.4 97 35.1


User provided reference genes

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