Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre06.g308850 Chlamydomonas reinhardtii HOM05D003082 ORTHO05D003497 6.2e-121 437.6 237 100.0
MCO15G044 Micromonas commoda HOM05D003082 ORTHO05D003497 3.1e-19 99.8 192 41.1
TWI81G0860 Tripterygium wilfordii HOM05D003082 ORTHO05D003497 2.9e-17 93.2 235 30.6
BcaB06g27069 Brassica carinata HOM05D003082 ORTHO05D003497 4.9e-17 92.4 241 32.0
TWI60G0785 Tripterygium wilfordii HOM05D003082 ORTHO05D003497 6.4e-17 92.0 235 29.8
Lalb_Chr14g0370291 Lupinus albus HOM05D003082 ORTHO05D003497 1.1e-16 91.3 218 32.6
Ca_11830_v3 Cicer arietinum L. HOM05D003082 ORTHO05D003497 5.4e-16 89.0 189 31.7
Migut.H01515 Erythranthe guttata HOM05D003082 ORTHO05D003497 7.1e-16 88.6 194 34.0
BraA07t30937Z Brassica rapa HOM05D003082 ORTHO05D003497 1.2e-15 87.8 198 31.8
SGA_v2.0_scaffold7G03956 Striga asiatica HOM05D003082 ORTHO05D003497 1.2e-15 87.8 192 36.5
TWI15G0329 Tripterygium wilfordii HOM05D003082 ORTHO05D003497 1.6e-15 87.4 235 29.4
BcaC02g08888 Brassica carinata HOM05D003082 ORTHO05D003497 2.1e-15 87.0 242 30.2
Sp7g04760 Schrenkiella parvula HOM05D003082 ORTHO05D003497 2.1e-15 87.0 245 30.6
CiPaw.05G244300 Carya illinoinensis HOM05D003082 ORTHO05D003497 2.7e-15 86.7 248 31.9
CDE07G0767 Ceratophyllum demersum HOM05D003082 ORTHO05D003497 2.7e-15 86.7 253 27.7
Migut.M01208 Erythranthe guttata HOM05D003082 ORTHO05D003497 3.5e-15 86.3 195 32.8
Actinidia01599 Actinidia chinensis HOM05D003082 ORTHO05D003497 4.6e-15 85.9 219 31.5
Atru.chr9.1638 Acer truncatum HOM05D003082 ORTHO05D003497 7.8e-15 85.1 235 30.6
A07p33090 Brassica napus HOM05D003082 ORTHO05D003497 7.8e-15 85.1 198 31.3
THA.LOC104823823 Tarenaya hassleriana HOM05D003082 ORTHO05D003497 7.8e-15 85.1 239 31.4
Pp3c4_20470 Physcomitrium patens HOM05D003082 ORTHO05D003497 1.0e-14 84.7 150 35.3
Ah.03g147370 Amaranthus hybridus HOM05D003082 ORTHO05D003497 1.3e-14 84.3 242 31.0
Hma1.2p1_0127F.1_g059670 Hydrangea macrophylla HOM05D003082 ORTHO05D003497 1.3e-14 84.3 201 32.3
TWI74G0632 Tripterygium wilfordii HOM05D003082 ORTHO05D003497 1.3e-14 84.3 246 31.3
Pp3c13_8920 Physcomitrium patens HOM05D003082 ORTHO05D003497 2.3e-14 83.6 206 34.5
TPR.G19886 Trifolium pratense HOM05D003082 ORTHO05D003497 2.3e-14 83.6 146 33.6
C04p49430 Brassica napus HOM05D003082 ORTHO05D003497 3.0e-14 83.2 223 30.0
Lalb_Chr22g0353931 Lupinus albus HOM05D003082 ORTHO05D003497 3.0e-14 83.2 238 29.8
Oeu053940.1 Olea europaea HOM05D003082 ORTHO05D003497 3.0e-14 83.2 245 29.8
Sp5g21120 Schrenkiella parvula HOM05D003082 ORTHO05D003497 3.0e-14 83.2 199 32.2
THA.LOC104822082 Tarenaya hassleriana HOM05D003082 ORTHO05D003497 3.0e-14 83.2 240 30.4
BcaB06g27692 Brassica carinata HOM05D003082 ORTHO05D003497 3.9e-14 82.8 244 29.1
CiPaw.06G015400 Carya illinoinensis HOM05D003082 ORTHO05D003497 3.9e-14 82.8 235 30.6
Dinv06240 Davidia involucrata HOM05D003082 ORTHO05D003497 3.9e-14 82.8 233 29.2
MSTRG.7294 Avicennia marina HOM05D003082 ORTHO05D003497 5.1e-14 82.4 242 32.6
A04p15210 Brassica napus HOM05D003082 ORTHO05D003497 5.1e-14 82.4 248 30.2
Cc02_g12480 Coffea canephora HOM05D003082 ORTHO05D003497 5.1e-14 82.4 236 30.1
TAR374G0282 Trochodendron aralioides HOM05D003082 ORTHO05D003497 5.1e-14 82.4 246 31.3
AL7G46180 Arabidopsis lyrata HOM05D003082 ORTHO05D003497 6.6e-14 82.0 251 29.9
Psat1g121400 Pisum sativum HOM05D003082 ORTHO05D003497 6.6e-14 82.0 147 33.3
Manes.06G016100 Manihot esculenta HOM05D003082 ORTHO05D003497 8.7e-14 81.6 253 29.6
QL01p029277 Quercus lobata HOM05D003082 ORTHO05D003497 8.7e-14 81.6 214 31.3
Atru.chr1.1952 Acer truncatum HOM05D003082 ORTHO05D003497 1.1e-13 81.3 209 30.6
Sed0014317 Sechium edule HOM05D003082 ORTHO05D003497 1.1e-13 81.3 237 30.0
BolC4t26528H Brassica oleracea HOM05D003082 ORTHO05D003497 1.5e-13 80.9 223 30.0
Haze_14301 Corylus avellana HOM05D003082 ORTHO05D003497 1.5e-13 80.9 194 33.0
Glyma.09G165600 Glycine max HOM05D003082 ORTHO05D003497 1.5e-13 80.9 238 29.0
PGSC0003DMG400022359 Solanum tuberosum HOM05D003082 ORTHO05D003497 1.5e-13 80.9 239 31.4
CARHR215550 Cardamine hirsuta HOM05D003082 ORTHO05D003497 1.9e-13 80.5 246 31.7
Gorai.011G194600 Gossypium raimondii HOM05D003082 ORTHO05D003497 1.9e-13 80.5 149 36.9
Medtr6g478160 Medicago truncatula HOM05D003082 ORTHO05D003497 1.9e-13 80.5 146 34.2
AT5G37475 Arabidopsis thaliana HOM05D003082 ORTHO05D003497 2.5e-13 80.1 251 29.1
BcaC03g14729 Brassica carinata HOM05D003082 ORTHO05D003497 2.5e-13 80.1 200 32.0
Lj2g0006781 Lotus japonicus HOM05D003082 ORTHO05D003497 2.5e-13 80.1 236 27.1
Aqoxy3G02868 Aquilegia oxysepala HOM05D003082 ORTHO05D003497 3.3e-13 79.7 204 30.9
Gohir.D02G056500 Gossypium hirsutum HOM05D003082 ORTHO05D003497 3.3e-13 79.7 248 31.0
CANSAT01G2338 Cannabis sativa HOM05D003082 ORTHO05D003497 4.3e-13 79.3 196 29.1
Gorai.005G062400 Gossypium raimondii HOM05D003082 ORTHO05D003497 4.3e-13 79.3 243 31.3
PSO063G3459 Papaver somniferum HOM05D003082 ORTHO05D003497 4.3e-13 79.3 181 32.0
BcaC08g46082 Brassica carinata HOM05D003082 ORTHO05D003497 5.6e-13 79.0 112 36.6
MELO3C025123.2 Cucumis melo HOM05D003082 ORTHO05D003497 5.6e-13 79.0 214 30.4
Gohir.A10G167800 Gossypium hirsutum HOM05D003082 ORTHO05D003497 5.6e-13 79.0 149 36.2
Nitab4.5_0003465g0050 Nicotiana tabacum HOM05D003082 ORTHO05D003497 5.6e-13 79.0 194 33.0
Nitab4.5_0012269g0010 Nicotiana tabacum HOM05D003082 ORTHO05D003497 5.6e-13 79.0 238 29.8
SGA_v2.0_scaffold114G31974 Striga asiatica HOM05D003082 ORTHO05D003497 5.6e-13 79.0 148 35.8
BolC6t39029H Brassica oleracea HOM05D003082 ORTHO05D003497 7.3e-13 78.6 199 31.2
Gohir.A02G051600 Gossypium hirsutum HOM05D003082 ORTHO05D003497 7.3e-13 78.6 243 30.5
Phvul.004G141100 Phaseolus vulgaris HOM05D003082 ORTHO05D003497 7.3e-13 78.6 240 29.2
Potri.004G082200 Populus trichocarpa HOM05D003082 ORTHO05D003497 7.3e-13 78.6 159 34.6
Thecc.04G291800 Theobroma cacao HOM05D003082 ORTHO05D003497 7.3e-13 78.6 149 34.9
AL2G23680 Arabidopsis lyrata HOM05D003082 ORTHO05D003497 9.6e-13 78.2 193 30.6
BraA02t06402Z Brassica rapa HOM05D003082 ORTHO05D003497 9.6e-13 78.2 190 31.1
Gohir.A09G236200 Gossypium hirsutum HOM05D003082 ORTHO05D003497 9.6e-13 78.2 233 28.3
Gohir.D10G173900 Gossypium hirsutum HOM05D003082 ORTHO05D003497 9.6e-13 78.2 149 36.2
Actinidia17178 Actinidia chinensis HOM05D003082 ORTHO05D003497 1.3e-12 77.8 159 32.1
A02p13440 Brassica napus HOM05D003082 ORTHO05D003497 1.3e-12 77.8 123 37.4
CsaV3_5G024250 Cucumis sativus L. HOM05D003082 ORTHO05D003497 1.3e-12 77.8 243 28.8
MSTRG.13183 Avicennia marina HOM05D003082 ORTHO05D003497 1.6e-12 77.4 246 30.5
BcaB03g15297 Brassica carinata HOM05D003082 ORTHO05D003497 1.6e-12 77.4 142 33.8
BolC2t08308H Brassica oleracea HOM05D003082 ORTHO05D003497 1.6e-12 77.4 201 31.3
Thhalv10027912m.g Eutrema salsugineum HOM05D003082 ORTHO05D003497 1.6e-12 77.4 255 28.6
MBI03_g35442_MAGBIO Magnolia biondii HOM05D003082 ORTHO05D003497 1.6e-12 77.4 194 28.9
Mapoly0038s0048 Marchantia polymorpha HOM05D003082 ORTHO05D003497 1.6e-12 77.4 156 34.6
PSO170G2980 Papaver somniferum HOM05D003082 ORTHO05D003497 1.6e-12 77.4 236 28.0
ATR0743G023 Amborella trichopoda HOM05D003082 ORTHO05D003497 2.1e-12 77.0 209 30.6
AT1G66070 Arabidopsis thaliana HOM05D003082 ORTHO05D003497 2.1e-12 77.0 102 36.3
BcaB05g24148 Brassica carinata HOM05D003082 ORTHO05D003497 2.1e-12 77.0 122 36.9
Ciclev10002394m.g Citrus clementina HOM05D003082 ORTHO05D003497 2.1e-12 77.0 145 33.1
Os02g0122300 Oryza sativa ssp. japonica HOM05D003082 ORTHO05D003497 2.1e-12 77.0 247 26.3
Peaxi162Scf00588g01011 Petunia axillaris HOM05D003082 ORTHO05D003497 2.1e-12 77.0 243 30.0
Lj6P692T22 Lonicera japonica HOM05D003082 ORTHO05D003497 2.8e-12 76.6 157 31.8
Nitab4.5_0003574g0100 Nicotiana tabacum HOM05D003082 ORTHO05D003497 2.8e-12 76.6 242 30.2
Sc14g0006870 Simmondsia chinensis HOM05D003082 ORTHO05D003497 2.8e-12 76.6 143 33.6
TAR622G0065 Trochodendron aralioides HOM05D003082 ORTHO05D003497 2.8e-12 76.6 243 28.0
arahy.Tifrunner.gnm1.ann1.TD12MZ Arachis hypogaea HOM05D003082 ORTHO05D003497 3.6e-12 76.3 153 32.7
arahy.Tifrunner.gnm1.ann1.W7Y30R Arachis hypogaea HOM05D003082 ORTHO05D003497 3.6e-12 76.3 124 36.3
MSTRG.15930 Avicennia marina HOM05D003082 ORTHO05D003497 3.6e-12 76.3 250 29.6
Gorai.006G260000 Gossypium raimondii HOM05D003082 ORTHO05D003497 3.6e-12 76.3 185 33.5
ClCG01G008760 Citrullus lanatus HOM05D003082 ORTHO05D003497 4.8e-12 75.9 215 30.7
MD16G1279500 Malus domestica HOM05D003082 ORTHO05D003497 4.8e-12 75.9 123 34.1
Nitab4.5_0000190g0170 Nicotiana tabacum HOM05D003082 ORTHO05D003497 4.8e-12 75.9 243 29.6
PSO384G2055 Papaver somniferum HOM05D003082 ORTHO05D003497 4.8e-12 75.9 129 35.7
Peaxi162Scf00299g00531 Petunia axillaris HOM05D003082 ORTHO05D003497 4.8e-12 75.9 176 33.5
Potri.017G138300 Populus trichocarpa HOM05D003082 ORTHO05D003497 4.8e-12 75.9 233 27.5
Aa31LG2G2810 Aethionema arabicum HOM05D000451 ORTHO05D000351 6.2e-12 75.5 146 32.9
AUR62019963 Chenopodium quinoa HOM05D003082 ORTHO05D003497 6.2e-12 75.5 169 31.4
Duzib052G0144 Durio zibethinus HOM05D003082 ORTHO05D003497 6.2e-12 75.5 240 29.6
GSVIVG01000052001 Vitis vinifera HOM05D003082 ORTHO05D003497 6.2e-12 75.5 152 30.9
Aqoxy5G04053 Aquilegia oxysepala HOM05D003082 ORTHO05D003497 8.1e-12 75.1 240 28.3
Thhalv10019428m.g Eutrema salsugineum HOM05D003082 ORTHO05D003497 8.1e-12 75.1 102 36.3
COL.COLO4_34689 Corchorus olitorius HOM05D003082 ORTHO05D003497 1.1e-11 74.7 248 29.8
unitig_46.g18626 Utricularia gibba HOM05D003082 ORTHO05D003497 1.1e-11 74.7 238 26.9
Hma1.2p1_0331F.1_g127550 Hydrangea macrophylla HOM05D003082 ORTHO05D003497 1.4e-11 74.3 193 30.1
Hund04328 Selenicereus undatus HOM05D003082 ORTHO05D003497 1.4e-11 74.3 211 29.9
Lalb_Chr24g0398531 Lupinus albus HOM05D003082 ORTHO05D003497 1.8e-11 73.9 144 33.3
MD06G1026500 Malus domestica HOM05D003082 ORTHO05D003497 1.8e-11 73.9 152 30.9
SMO228G0136 Selaginella moellendorffii HOM05D003082 ORTHO05D003497 1.8e-11 73.9 239 28.9
C06p39360 Brassica napus HOM05D003082 ORTHO05D003497 2.4e-11 73.6 145 32.4
CSS0043531 Camellia sinensis var. sinensis HOM05D003082 ORTHO05D003497 2.4e-11 73.6 162 30.9
FAN04G2030 Fragaria x ananassa HOM05D003082 ORTHO05D003497 2.4e-11 73.6 169 32.5
Lj3A832G16 Lonicera japonica HOM05D003082 ORTHO05D003497 2.4e-11 73.6 169 31.4
Nn2g12687 Nelumbo nucifera HOM05D003082 ORTHO05D003497 2.4e-11 73.6 184 29.9
PSO135G0099 Papaver somniferum HOM05D003082 ORTHO05D003497 2.4e-11 73.6 119 34.5
CBR_g41674 Chara braunii HOM05D003082 ORTHO05D003497 3.1e-11 73.2 174 35.6
DCAR_019930 Daucus carota HOM05D003082 ORTHO05D003497 3.1e-11 73.2 251 30.7
Dinv20511 Davidia involucrata HOM05D003082 ORTHO05D003497 3.1e-11 73.2 238 25.6
FvH4_5g23100 Fragaria vesca HOM05D003082 ORTHO05D003497 3.1e-11 73.2 169 32.5
FAN13G0663 Fragaria x ananassa HOM05D003082 ORTHO05D003497 3.1e-11 73.2 169 32.5
FAN13G1153 Fragaria x ananassa HOM05D003082 ORTHO05D003497 3.1e-11 73.2 169 32.5
FAN18G1653 Fragaria x ananassa HOM05D003082 ORTHO05D003497 3.1e-11 73.2 169 32.5
FAN18G4367 Fragaria x ananassa HOM05D003082 ORTHO05D003497 3.1e-11 73.2 169 32.5
Glyma.16G215500 Glycine max HOM05D003082 ORTHO05D003497 3.1e-11 73.2 243 28.8
PGR042G1487 Punica granatum HOM05D003082 ORTHO05D003497 3.1e-11 73.2 152 32.2
Aa31LG9G17590 Aethionema arabicum HOM05D000001 ORTHO05D000003 4.0e-11 72.8 247 28.7
Carub.0002s1202 Capsella rubella HOM05D003082 ORTHO05D003497 4.0e-11 72.8 193 29.5
Sopen02g023870 Solanum pennellii HOM05D003082 ORTHO05D003497 4.0e-11 72.8 258 29.1
C02p21740 Brassica napus HOM05D003082 ORTHO05D003497 5.3e-11 72.4 184 31.5
FAN08G1589 Fragaria x ananassa HOM05D003082 ORTHO05D003497 5.3e-11 72.4 169 32.5
Prupe.5G027300 Prunus persica HOM05D003082 ORTHO05D003497 5.3e-11 72.4 251 27.9
EL10Ac6g15380 Beta vulgaris HOM05D003082 ORTHO05D003497 6.9e-11 72.0 171 31.0
AUR62007100 Chenopodium quinoa HOM05D003082 ORTHO05D003497 6.9e-11 72.0 173 31.2
AagrBONN_evm.TU.Sc2ySwM_228.3198 Anthoceros agrestis HOM05D003082 ORTHO05D003497 9.0e-11 71.6 160 35.0
Dinv20531 Davidia involucrata HOM05D003082 ORTHO05D003497 1.2e-10 71.2 235 25.5
Oeu038230.1 Olea europaea HOM05D003082 ORTHO05D003497 1.2e-10 71.2 154 33.1
Sed0024856 Sechium edule HOM05D003082 ORTHO05D003497 1.5e-10 70.9 234 26.9
Solyc02g079060.3 Solanum lycopersicum HOM05D003082 ORTHO05D003497 1.5e-10 70.9 255 29.0
Eucgr.F02897 Eucalyptus grandis HOM05D003082 ORTHO05D003497 2.0e-10 70.5 208 27.4
Pp3c3_11040 Physcomitrium patens HOM05D003082 ORTHO05D003497 2.0e-10 70.5 151 29.8
VMungo0464G0847 Vigna mungo HOM05D003082 ORTHO05D003497 2.0e-10 70.5 239 27.6
Zm00001eb208430 Zea mays HOM05D003082 ORTHO05D003497 2.0e-10 70.5 191 30.9
Carub.0007s3263 Capsella rubella HOM05D003082 ORTHO05D003497 2.6e-10 70.1 250 30.0
Nn7g36916 Nelumbo nucifera HOM05D003082 ORTHO05D003497 2.6e-10 70.1 241 28.6
RcHm_v2.0_Chr7g0211981 Rosa chinensis HOM05D003082 ORTHO05D003497 2.6e-10 70.1 249 29.3
BcaB01g01292 Brassica carinata HOM05D003082 ORTHO05D003497 3.4e-10 69.7 121 36.4
Pp3c24_9310 Physcomitrium patens HOM05D003082 ORTHO05D003497 3.4e-10 69.7 230 27.0
Haze_00671 Corylus avellana HOM05D003082 ORTHO05D003497 4.4e-10 69.3 213 28.2
BraA04t17161Z Brassica rapa HOM05D003082 ORTHO05D003497 5.8e-10 68.9 140 32.9
CARHR058010 Cardamine hirsuta HOM05D003082 ORTHO05D003497 5.8e-10 68.9 103 34.0
DCAR_009639 Daucus carota HOM05D003082 ORTHO05D003497 5.8e-10 68.9 241 29.5
Duzib212G0528 Durio zibethinus HOM05D003082 ORTHO05D003497 5.8e-10 68.9 240 30.8
Duzib151G0431 Durio zibethinus HOM05D003082 ORTHO05D003497 9.9e-10 68.2 167 32.3
Zm00001eb230510 Zea mays HOM05D003082 ORTHO05D003497 1.3e-09 67.8 250 26.8
HanXRQChr14g0432091 Helianthus annuus HOM05D003082 ORTHO05D003497 2.2e-09 67.0 149 31.5
Lsat_1_v5_gn_2_38821 Lactuca sativa HOM05D003082 ORTHO05D003497 1.1e-08 64.7 110 31.8
Sabra17G0115000 Salix brachista HOM05D003082 ORTHO05D003497 1.4e-08 64.3 90 36.7
Gohir.D09G237000 Gossypium hirsutum HOM05D003082 ORTHO05D003497 1.9e-08 63.9 138 31.2
ECA238G3678 Erigeron canadensis HOM05D003082 ORTHO05D003497 2.4e-08 63.5 149 30.9
QL02p059987 Quercus lobata HOM05D003082 ORTHO05D003497 4.2e-08 62.8 249 26.1
Rhsim10G0103200 Rhododendron simsii HOM05D003082 ORTHO05D003497 7.1e-08 62.0 139 28.8
RhsimUnG0060700 Rhododendron simsii HOM05D003082 ORTHO05D003497 7.1e-08 62.0 139 28.8
QL07p034910 Quercus lobata HOM05D003082 ORTHO05D003497 1.6e-07 60.8 136 31.6
unitig_37.g12337 Utricularia gibba HOM05D006195 ORTHO05D007710 1.6e-07 60.8 135 30.4
Oeu043695.1 Olea europaea HOM05D003082 ORTHO05D003497 7.9e-07 58.5 108 37.0
Sabra17G0112800 Salix brachista HOM05D003082 ORTHO05D003497 7.9e-07 58.5 147 29.9
vmacro12219 Vaccinium macrocarpon HOM05D003082 ORTHO05D003497 7.9e-07 58.5 185 29.7
TAR371G0008 Trochodendron aralioides HOM05D003082 ORTHO05D003497 3.9e-06 56.2 168 29.8
SalBow8G1240 Salvia bowleyana HOM05D003082 ORTHO05D003497 5.1e-06 55.8 143 28.0
Pp3c12_15100 Physcomitrium patens HOM05D003082 ORTHO05D003497 6.6e-06 55.5 114 28.1


User provided reference genes

Program Settings