Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre06.g304100 Chlamydomonas reinhardtii HOM05D003525 ORTHO05D004578 1.9e-239 832.4 530 100.0
Pp3c4_1720 Physcomitrium patens HOM05D003525 ORTHO05D004578 1.6e-79 301.2 529 38.4
SalBow6G0296 Salvia bowleyana HOM05D003525 ORTHO05D004578 2.5e-77 293.9 539 37.3
SalBow6G6569 Salvia bowleyana HOM05D003525 ORTHO05D004578 2.5e-77 293.9 539 37.3
MCO10G181 Micromonas commoda HOM05D003525 ORTHO05D004578 3.2e-77 293.5 534 38.0
GSVIVG01031961001 Vitis vinifera HOM05D003525 ORTHO05D004578 1.6e-76 291.2 535 36.4
QL11p043469 Quercus lobata HOM05D003525 ORTHO05D004578 2.3e-75 287.3 531 37.3
Zm00001eb040800 Zea mays HOM05D003525 ORTHO05D004578 4.0e-75 286.6 533 36.2
MSTRG.20085 Avicennia marina HOM05D003525 ORTHO05D004578 2.0e-74 284.3 536 36.0
vmacro17495 Vaccinium macrocarpon HOM05D003525 ORTHO05D004578 7.5e-74 282.3 531 34.5
Cfa005008 Carpinus fangiana HOM05D003525 ORTHO05D004578 1.3e-73 281.6 536 35.8
CiPaw.05G064000 Carya illinoinensis HOM05D003525 ORTHO05D004578 2.2e-73 280.8 535 39.4
TWI31G1364 Tripterygium wilfordii HOM05D003525 ORTHO05D004578 3.7e-73 280.0 532 34.4
Haze_02380 Corylus avellana HOM05D003525 ORTHO05D004578 4.8e-73 279.6 536 35.8
Dinv42068 Davidia involucrata HOM05D003525 ORTHO05D004578 4.8e-73 279.6 534 34.5
Actinidia00521 Actinidia chinensis HOM05D003525 ORTHO05D004578 6.3e-73 279.3 532 37.2
Ciclev10028340m.g Citrus clementina HOM05D003525 ORTHO05D004578 8.3e-73 278.9 534 35.6
Solyc10g051340.2 Solanum lycopersicum HOM05D003525 ORTHO05D004578 8.3e-73 278.9 532 33.5
TWI79G1197 Tripterygium wilfordii HOM05D003525 ORTHO05D004578 1.1e-72 278.5 534 35.0
Rhsim05G0074500 Rhododendron simsii HOM05D003525 ORTHO05D004578 1.4e-72 278.1 533 34.5
Peaxi162Scf00003g01338 Petunia axillaris HOM05D003525 ORTHO05D004578 2.4e-72 277.3 530 34.2
Sopen10g023030 Solanum pennellii HOM05D003525 ORTHO05D004578 2.4e-72 277.3 532 34.4
Atru.chr5.3008 Acer truncatum HOM05D003525 ORTHO05D004578 3.1e-72 276.9 537 35.6
Actinidia17817 Actinidia chinensis HOM05D003525 ORTHO05D004578 3.1e-72 276.9 534 34.1
unitig_8.g3568 Utricularia gibba HOM05D003525 ORTHO05D004578 3.1e-72 276.9 532 35.9
Gorai.005G243200 Gossypium raimondii HOM05D003525 ORTHO05D004578 4.1e-72 276.6 532 34.4
PSO541G1852 Papaver somniferum HOM05D003525 ORTHO05D004578 4.1e-72 276.6 536 34.9
PSO675G1462 Papaver somniferum HOM05D003525 ORTHO05D004578 5.4e-72 276.2 536 33.8
PGR142G1190 Punica granatum HOM05D003525 ORTHO05D004578 5.4e-72 276.2 532 35.5
Aa31LG8G13620 Aethionema arabicum HOM05D003525 ORTHO05D004578 7.0e-72 275.8 538 36.6
AUR62016732 Chenopodium quinoa HOM05D003525 ORTHO05D004578 7.0e-72 275.8 532 34.2
Gohir.D02G215300 Gossypium hirsutum HOM05D003525 ORTHO05D004578 7.0e-72 275.8 532 34.4
SGA_v2.0_scaffold58G20536 Striga asiatica HOM05D003525 ORTHO05D004578 7.0e-72 275.8 539 34.3
arahy.Tifrunner.gnm1.ann1.19SFKA Arachis hypogaea HOM05D003525 ORTHO05D004578 9.1e-72 275.4 540 37.0
PGSC0003DMG400033911 Solanum tuberosum HOM05D003525 ORTHO05D004578 9.1e-72 275.4 532 34.6
arahy.Tifrunner.gnm1.ann1.PLG8VX Arachis hypogaea HOM05D003525 ORTHO05D004578 1.2e-71 275.0 540 37.0
Os08g0447900 Oryza sativa ssp. japonica HOM05D003525 ORTHO05D004578 1.2e-71 275.0 532 34.2
Solyc01g109580.4 Solanum lycopersicum HOM05D003525 ORTHO05D004578 1.2e-71 275.0 532 35.5
EL10Ac9g21728 Beta vulgaris HOM05D003525 ORTHO05D004578 2.0e-71 274.2 533 36.6
CANSAT01G0222 Cannabis sativa HOM05D003525 ORTHO05D004578 2.0e-71 274.2 536 34.9
CiPaw.06G135700 Carya illinoinensis HOM05D003525 ORTHO05D004578 2.7e-71 273.9 534 37.6
Lj1g0027431 Lotus japonicus HOM05D003525 ORTHO05D004578 2.7e-71 273.9 530 36.8
SEGI_09930 Sequoiadendron giganteum HOM05D003525 ORTHO05D004578 3.5e-71 273.5 528 34.8
Sopen01g051770 Solanum pennellii HOM05D003525 ORTHO05D004578 3.5e-71 273.5 532 35.3
Gohir.A03G194200 Gossypium hirsutum HOM05D003525 ORTHO05D004578 4.5e-71 273.1 532 34.8
PSO210G1867 Papaver somniferum HOM05D003525 ORTHO05D004578 5.9e-71 272.7 532 35.2
ECA234G0118 Erigeron canadensis HOM05D003525 ORTHO05D004578 7.7e-71 272.3 532 34.6
Sc18g0004490 Simmondsia chinensis HOM05D003525 ORTHO05D004578 7.7e-71 272.3 532 34.0
Nn1g05019 Nelumbo nucifera HOM05D003525 ORTHO05D004578 1.0e-70 271.9 532 34.0
PSO731G0006 Papaver somniferum HOM05D003525 ORTHO05D004578 1.0e-70 271.9 532 35.0
ATR0733G133 Amborella trichopoda HOM05D003525 ORTHO05D004578 1.3e-70 271.6 533 36.6
PRCOL_00002324 Prasinoderma coloniale HOM05D003525 ORTHO05D004578 2.3e-70 270.8 534 36.7
Manes.15G163700 Manihot esculenta HOM05D003525 ORTHO05D004578 2.9e-70 270.4 535 34.8
TAR376G0071 Trochodendron aralioides HOM05D003525 ORTHO05D004578 2.9e-70 270.4 533 33.8
Lalb_Chr08g0246641 Lupinus albus HOM05D003525 ORTHO05D004578 5.0e-70 269.6 535 34.4
Lsat_1_v5_gn_7_89340 Lactuca sativa HOM05D003525 ORTHO05D004578 8.6e-70 268.9 532 33.6
TAR628G1296 Trochodendron aralioides HOM05D003525 ORTHO05D004578 8.6e-70 268.9 540 34.4
HanXRQChr10g0307161 Helianthus annuus HOM05D003525 ORTHO05D004578 1.5e-69 268.1 532 35.0
HanXRQChr13g0410301 Helianthus annuus HOM05D003525 ORTHO05D004578 1.5e-69 268.1 532 34.4
Lalb_Chr23g0265401 Lupinus albus HOM05D003525 ORTHO05D004578 1.5e-69 268.1 534 36.0
Zm00001eb055650 Zea mays HOM05D003525 ORTHO05D004578 1.5e-69 268.1 532 36.5
Aqoxy6G01092 Aquilegia oxysepala HOM05D003525 ORTHO05D004578 1.9e-69 267.7 532 37.6
CsaV3_2G014670 Cucumis sativus L. HOM05D003525 ORTHO05D004578 1.9e-69 267.7 536 37.5
Nitab4.5_0005152g0050 Nicotiana tabacum HOM05D003525 ORTHO05D004578 2.5e-69 267.3 535 34.0
Sabra09G0088700 Salix brachista HOM05D003525 ORTHO05D004578 2.5e-69 267.3 532 33.8
THA.LOC104807320 Tarenaya hassleriana HOM05D003525 ORTHO05D004578 2.5e-69 267.3 536 35.1
CAN.G1412.2 Capsicum annuum HOM05D003525 ORTHO05D004578 3.3e-69 266.9 475 36.0
RcHm_v2.0_Chr6g0264151 Rosa chinensis HOM05D003525 ORTHO05D004578 3.3e-69 266.9 529 36.1
ECA236G3498 Erigeron canadensis HOM05D003525 ORTHO05D004578 4.2e-69 266.5 534 36.5
Lsat_1_v5_gn_5_118620 Lactuca sativa HOM05D003525 ORTHO05D004578 4.2e-69 266.5 531 35.2
Lj5A197T61 Lonicera japonica HOM05D003525 ORTHO05D004578 5.5e-69 266.2 531 32.8
AUR62011328 Chenopodium quinoa HOM05D003525 ORTHO05D004578 7.2e-69 265.8 532 33.8
Gohir.D13G033000 Gossypium hirsutum HOM05D003525 ORTHO05D004578 7.2e-69 265.8 532 36.5
Mapoly0074s0004 Marchantia polymorpha HOM05D003525 ORTHO05D004578 7.2e-69 265.8 530 37.9
Ah.01g019420 Amaranthus hybridus HOM05D003525 ORTHO05D004578 9.5e-69 265.4 517 35.8
A01p03970 Brassica napus HOM05D003525 ORTHO05D004578 9.5e-69 265.4 533 34.0
C01p04280 Brassica napus HOM05D003525 ORTHO05D004578 1.6e-68 264.6 533 33.6
BraA01t00384Z Brassica rapa HOM05D003525 ORTHO05D004578 1.6e-68 264.6 533 33.8
HanXRQChr16g0505731 Helianthus annuus HOM05D003525 ORTHO05D004578 1.6e-68 264.6 541 38.4
TAR381G1436 Trochodendron aralioides HOM05D003525 ORTHO05D004578 1.6e-68 264.6 532 37.0
Nn5g29579 Nelumbo nucifera HOM05D003525 ORTHO05D004578 2.1e-68 264.2 534 33.9
Potri.004G153900 Populus trichocarpa HOM05D003525 ORTHO05D004578 2.1e-68 264.2 533 38.3
MELO3C020978.2 Cucumis melo HOM05D003525 ORTHO05D004578 2.8e-68 263.8 536 37.3
Cc02_g17610 Coffea canephora HOM05D003525 ORTHO05D004578 3.6e-68 263.5 541 33.3
Glyma.11G118300 Glycine max HOM05D003525 ORTHO05D004578 3.6e-68 263.5 534 36.0
Hund06230 Selenicereus undatus HOM05D003525 ORTHO05D004578 3.6e-68 263.5 533 34.9
C03p85740 Brassica napus HOM05D003525 ORTHO05D004578 4.7e-68 263.1 532 34.6
BolC3t20862H Brassica oleracea HOM05D003525 ORTHO05D004578 4.7e-68 263.1 532 34.6
MD05G1067200 Malus domestica HOM05D003525 ORTHO05D004578 4.7e-68 263.1 529 34.8
BolC1t00417H Brassica oleracea HOM05D003525 ORTHO05D004578 6.1e-68 262.7 534 33.7
Potri.009G115500 Populus trichocarpa HOM05D003525 ORTHO05D004578 6.1e-68 262.7 538 33.8
Sed0027089 Sechium edule HOM05D003525 ORTHO05D004578 6.1e-68 262.7 537 33.3
CAN.G1.44 Capsicum annuum HOM05D003525 ORTHO05D004578 8.0e-68 262.3 525 32.6
Prupe.8G097900 Prunus persica HOM05D003525 ORTHO05D004578 8.0e-68 262.3 529 35.2
FAN20G1110 Fragaria x ananassa HOM05D003525 ORTHO05D004578 1.0e-67 261.9 529 36.5
Oeu020764.1 Olea europaea HOM05D003525 ORTHO05D004578 1.0e-67 261.9 555 33.0
Aqoxy5G01649 Aquilegia oxysepala HOM05D003525 ORTHO05D004578 1.4e-67 261.5 532 35.9
BcaC01g00903 Brassica carinata HOM05D003525 ORTHO05D004578 1.4e-67 261.5 532 34.8
CDE07G1879 Ceratophyllum demersum HOM05D003525 ORTHO05D004578 1.4e-67 261.5 532 33.5
AT4G34490 Arabidopsis thaliana HOM05D003525 ORTHO05D004578 1.8e-67 261.2 532 35.2
Eucgr.I01265 Eucalyptus grandis HOM05D003525 ORTHO05D004578 1.8e-67 261.2 444 38.1
Sed0023087 Sechium edule HOM05D003525 ORTHO05D004578 2.3e-67 260.8 539 34.5
arahy.Tifrunner.gnm1.ann1.WSY56D Arachis hypogaea HOM05D003525 ORTHO05D004578 3.0e-67 260.4 551 33.2
AL7G16740 Arabidopsis lyrata HOM05D003525 ORTHO05D004578 4.0e-67 260.0 532 38.0
arahy.Tifrunner.gnm1.ann1.92AS0N Arachis hypogaea HOM05D003525 ORTHO05D004578 4.0e-67 260.0 551 33.2
ClCG11G004450 Citrullus lanatus HOM05D003525 ORTHO05D004578 4.0e-67 260.0 532 35.2
Os03g0722600 Oryza sativa ssp. japonica HOM05D003525 ORTHO05D004578 5.2e-67 259.6 540 35.0
Glyma.12G043700 Glycine max HOM05D003525 ORTHO05D004578 8.9e-67 258.8 534 36.1
Lj9A369G67 Lonicera japonica HOM05D003525 ORTHO05D004578 8.9e-67 258.8 533 34.7
Nitab4.5_0000308g0040 Nicotiana tabacum HOM05D003525 ORTHO05D004578 8.9e-67 258.8 536 34.7
Sp7g32280 Schrenkiella parvula HOM05D003525 ORTHO05D004578 8.9e-67 258.8 532 35.7
Duzib132G0954 Durio zibethinus HOM05D003525 ORTHO05D004578 1.5e-66 258.1 531 35.2
FvH4_2g08710 Fragaria vesca HOM05D003525 ORTHO05D004578 1.5e-66 258.1 529 36.5
FAN27G1229 Fragaria x ananassa HOM05D003525 ORTHO05D004578 1.5e-66 258.1 529 36.7
BraA08t33643Z Brassica rapa HOM05D003525 ORTHO05D004578 2.0e-66 257.7 538 34.4
FAN24G2203 Fragaria x ananassa HOM05D003525 ORTHO05D004578 2.0e-66 257.7 529 36.5
Gohir.A13G034600 Gossypium hirsutum HOM05D003525 ORTHO05D004578 2.0e-66 257.7 532 36.8
MD10G1076900 Malus domestica HOM05D003525 ORTHO05D004578 2.0e-66 257.7 529 35.2
BcaNung06262 Brassica carinata HOM05D003525 ORTHO05D004578 2.6e-66 257.3 532 36.3
COL.COLO4_25923 Corchorus olitorius HOM05D003525 ORTHO05D004578 2.6e-66 257.3 523 35.6
Duzib248G1434 Durio zibethinus HOM05D003525 ORTHO05D004578 2.6e-66 257.3 533 35.1
Migut.B00240 Erythranthe guttata HOM05D003525 ORTHO05D004578 2.6e-66 257.3 439 43.5
A08p16780 Brassica napus HOM05D003525 ORTHO05D004578 3.4e-66 256.9 537 34.3
Duzib052G0238 Durio zibethinus HOM05D003525 ORTHO05D004578 3.4e-66 256.9 533 34.9
MBI19_g07191_MAGBIO Magnolia biondii HOM05D003525 ORTHO05D004578 3.4e-66 256.9 443 36.6
BcaB03g11830 Brassica carinata HOM05D003525 ORTHO05D004578 4.4e-66 256.5 532 34.6
Thhalv10025082m.g Eutrema salsugineum HOM05D003525 ORTHO05D004578 4.4e-66 256.5 532 36.1
Manes.17G100700 Manihot esculenta HOM05D003525 ORTHO05D004578 5.7e-66 256.1 532 33.1
Ca_20867_v3 Cicer arietinum L. HOM05D003525 ORTHO05D004578 7.5e-66 255.8 535 36.1
Carub.0007s0581 Capsella rubella HOM05D003525 ORTHO05D004578 1.3e-65 255.0 532 36.3
ClCG02G005050 Citrullus lanatus HOM05D003525 ORTHO05D004578 1.3e-65 255.0 533 33.0
Sed0019550 Sechium edule HOM05D003525 ORTHO05D004578 1.3e-65 255.0 535 35.9
CARHR242770 Cardamine hirsuta HOM05D003525 ORTHO05D004578 2.2e-65 254.2 532 34.8
Aa31LG2G16030 Aethionema arabicum HOM05D003525 ORTHO05D004578 2.8e-65 253.8 532 38.5
Migut.N01237 Erythranthe guttata HOM05D003525 ORTHO05D004578 2.8e-65 253.8 531 33.0
Thecc.02G086000 Theobroma cacao HOM05D003525 ORTHO05D004578 2.8e-65 253.8 555 32.1
CsaV3_7G023520 Cucumis sativus L. HOM05D003525 ORTHO05D004578 3.7e-65 253.4 532 32.9
Sabra04G0102300 Salix brachista HOM05D003525 ORTHO05D004578 3.7e-65 253.4 534 38.0
THA.LOC104819606 Tarenaya hassleriana HOM05D003525 ORTHO05D004578 3.7e-65 253.4 536 35.6
DCAR_028988 Daucus carota HOM05D003525 ORTHO05D004578 8.3e-65 252.3 577 31.4
HanXRQChr04g0127991 Helianthus annuus HOM05D003525 ORTHO05D004578 1.4e-64 251.5 534 36.1
CSS0028225 Camellia sinensis var. sinensis HOM05D003525 ORTHO05D004578 2.4e-64 250.8 542 33.4
DCAR_022933 Daucus carota HOM05D003525 ORTHO05D004578 4.1e-64 250.0 491 33.6
FAN15G1113 Fragaria x ananassa HOM05D003525 ORTHO05D004578 4.1e-64 250.0 529 35.3
CBR_g21060 Chara braunii HOM05D003525 ORTHO05D004578 5.4e-64 249.6 484 35.3
CSS0001193 Camellia sinensis var. sinensis HOM05D003525 ORTHO05D004578 7.0e-64 249.2 502 33.9
Phvul.011G045700 Phaseolus vulgaris HOM05D003525 ORTHO05D004578 4.5e-63 246.5 534 35.8
PGSC0003DMG400000723 Solanum tuberosum HOM05D003525 ORTHO05D004578 1.0e-62 245.4 497 35.2
VMungo1127G1959 Vigna mungo HOM05D003525 ORTHO05D004578 1.0e-62 245.4 534 37.6
Dinv23526 Davidia involucrata HOM05D003525 ORTHO05D004578 2.3e-62 244.2 535 33.6
Medtr4g069960 Medicago truncatula HOM05D003525 ORTHO05D004578 2.3e-62 244.2 537 37.6
SMO174G0095 Selaginella moellendorffii HOM05D003525 ORTHO05D004578 8.6e-62 242.3 485 34.8
HPP92_017152 Vanilla planifolia HOM05D003525 ORTHO05D004578 1.9e-61 241.1 537 31.7
Gorai.013G037400 Gossypium raimondii HOM05D003525 ORTHO05D004578 9.5e-61 238.8 507 36.9
Zm00001eb215890 Zea mays HOM05D003525 ORTHO05D004578 4.7e-60 236.5 415 38.3
Oeu003718.1 Olea europaea HOM05D003525 ORTHO05D004578 4.0e-59 233.4 503 33.2
Psat7g184520 Pisum sativum HOM05D003525 ORTHO05D004578 4.0e-59 233.4 527 34.7
Nitab4.5_0001361g0240 Nicotiana tabacum HOM05D003525 ORTHO05D004578 2.6e-58 230.7 534 30.9
unitig_22.g5174 Utricularia gibba HOM05D003525 ORTHO05D004578 3.2e-56 223.8 531 31.5
Peaxi162Scf00016g00826 Petunia axillaris HOM05D003525 ORTHO05D004578 1.1e-53 215.3 531 30.7
Oeu029126.1 Olea europaea HOM05D003525 ORTHO05D004578 3.6e-52 210.3 508 31.7
MBI16_g38644_MAGBIO Magnolia biondii HOM05D003525 ORTHO05D004578 2.6e-50 204.1 469 33.3
Cpa.g.sc62.144 Carica papaya HOM05D003525 ORTHO05D004578 6.6e-46 189.5 344 39.2
AagrBONN_evm.TU.Sc2ySwM_344.2699 Anthoceros agrestis HOM05D003525 ORTHO05D004578 1.9e-45 188.0 418 40.7
Nitab4.5_0004172g0090 Nicotiana tabacum HOM05D003525 ORTHO05D004578 1.9e-45 188.0 226 44.7
Actinidia27898 Actinidia chinensis HOM05D003525 ORTHO05D004578 2.8e-44 184.1 230 42.6
MELO3C012526.2 Cucumis melo HOM05D003525 ORTHO05D004578 1.3e-41 175.3 499 28.9
Cfa027286 Carpinus fangiana HOM05D003525 ORTHO05D121739 3.8e-25 120.6 235 31.9
vmacro02112 Vaccinium macrocarpon HOM05D003525 ORTHO05D004578 6.4e-17 93.2 313 26.2
TPR.G333 Trifolium pratense HOM05D003525 ORTHO05D004578 1.9e-16 91.7 134 37.3
MELO3C014785.2 Cucumis melo HOM05D003525 ORTHO05D004578 1.5e-13 82.0 129 35.7
MELO3C019736.2 Cucumis melo HOM05D003525 ORTHO05D004578 1.1e-11 75.9 101 37.6
Actinidia27897 Actinidia chinensis HOM05D003525 ORTHO05D004578 9.9e-10 69.3 182 29.1
Nn2g12770 Nelumbo nucifera HOM05D003525 ORTHO05D019487 2.2e-09 68.2 83 41.0
Ah.12g055710 Amaranthus hybridus HOM05D001818 ORTHO05D001780 2.4e-08 64.7 100 43.0
TPR.G14489 Trifolium pratense HOM05D003525 ORTHO05D004578 1.6e-07 62.0 74 41.9
HPP92_017436 Vanilla planifolia HOM05D000653 ORTHO05D002177 1.6e-07 62.0 77 41.6
Actinidia08229 Actinidia chinensis HOM05D003525 ORTHO05D019487 3.5e-07 60.8 83 37.3
ECA234G4333 Erigeron canadensis HOM05D003525 ORTHO05D004578 1.0e-06 59.3 53 49.1


User provided reference genes

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