Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre06.g300250 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 0.0e+00 2114.0 1881 100.0
CBR_g51027 Chara braunii HOM05D008676 ORTHO05D010936 3.1e-45 189.1 324 34.9
Pp3c1_16240 Physcomitrium patens HOM05D008676 ORTHO05D010936 3.5e-41 175.6 340 35.6
Mapoly0012s0012 Marchantia polymorpha HOM05D008676 ORTHO05D010936 5.1e-40 171.8 335 35.5
MCO11G738 Micromonas commoda HOM05D008676 ORTHO05D010936 6.6e-40 171.4 342 31.9
SMO337G0080 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 1.5e-39 170.2 339 33.9
Cre17.g699500 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 2.5e-39 169.5 340 33.5
AagrBONN_evm.TU.Sc2ySwM_228.857 Anthoceros agrestis HOM05D008676 ORTHO05D010936 3.3e-39 169.1 335 34.3
MCO05G481 Micromonas commoda HOM05D008676 ORTHO05D010936 7.3e-39 167.9 338 34.6
Cre02.g117350 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 9.5e-39 167.5 365 32.6
PRCOL_00001343 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 1.1e-37 164.1 372 32.5
MCO10G276 Micromonas commoda HOM05D008676 ORTHO05D010936 1.2e-36 160.6 386 31.9
MCO11G220 Micromonas commoda HOM05D008676 ORTHO05D010936 9.9e-36 157.5 341 33.1
PRCOL_00007033 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 4.9e-35 155.2 338 33.7
MCO03G450 Micromonas commoda HOM05D008676 ORTHO05D010936 6.4e-35 154.8 330 32.4
PRCOL_00004385 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 2.4e-34 152.9 335 31.9
CBR_g54068 Chara braunii HOM05D008676 ORTHO05D010936 5.1e-32 145.2 353 30.9
Cre02.g146650 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 1.9e-31 143.3 399 30.1
AagrBONN_evm.TU.Sc2ySwM_369.291 Anthoceros agrestis HOM05D008676 ORTHO05D010936 4.3e-31 142.1 299 33.8
SMO117G0188 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 1.6e-30 140.2 313 31.3
Cre09.g403108 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 6.2e-30 138.3 373 29.0
Cre01.g050451 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 6.8e-29 134.8 398 30.4
SMO348G0088 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 8.9e-29 134.4 311 31.2
Pp3c6_25370 Physcomitrium patens HOM05D008676 ORTHO05D010936 1.7e-27 130.2 346 30.3
PRCOL_00003912 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 4.6e-25 122.1 373 27.1
Cre03.g145447 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 4.0e-21 109.0 272 33.5
CBR_g12467 Chara braunii HOM05D008676 ORTHO05D010936 2.6e-20 106.3 302 28.5
MCO15G046 Micromonas commoda HOM05D008676 ORTHO05D010936 6.4e-19 101.7 196 38.3
PRCOL_00006674 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 1.9e-18 100.1 275 30.5
Sc08g0008890 Simmondsia chinensis HOM05D006378 ORTHO05D007959 5.4e-18 98.6 197 32.0
CBR_g36369 Chara braunii HOM05D008676 ORTHO05D010936 9.3e-18 97.8 170 38.2
CBR_g36370 Chara braunii HOM05D008676 ORTHO05D010936 1.6e-17 97.1 69 60.9
Migut.J00925 Erythranthe guttata HOM05D006378 ORTHO05D007959 1.6e-17 97.1 274 28.5
Ah.09g231620 Amaranthus hybridus HOM05D006378 ORTHO05D007959 2.1e-17 96.7 274 28.5
MCO15G671 Micromonas commoda HOM05D008676 ORTHO05D010936 6.0e-17 95.1 360 29.7
Eucgr.C03264 Eucalyptus grandis HOM05D006378 ORTHO05D007959 7.8e-17 94.7 273 26.0
Eucgr.C03329 Eucalyptus grandis HOM05D006378 ORTHO05D007959 7.8e-17 94.7 273 26.0
Nitab4.5_0009436g0010 Nicotiana tabacum HOM05D006378 ORTHO05D007959 7.8e-17 94.7 210 29.0
Aqoxy7G04130 Aquilegia oxysepala HOM05D006378 ORTHO05D007959 1.0e-16 94.4 286 26.6
AUR62028935 Chenopodium quinoa HOM05D006378 ORTHO05D007959 1.7e-16 93.6 274 28.1
EL10Ac8g19061 Beta vulgaris HOM05D006378 ORTHO05D007959 2.3e-16 93.2 274 27.4
PRCOL_00002565 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 2.3e-16 93.2 279 29.4
PGSC0003DMG400019029 Solanum tuberosum HOM05D006378 ORTHO05D007959 2.3e-16 93.2 273 26.4
SGA_v2.0_scaffold91G28112 Striga asiatica HOM05D006378 ORTHO05D007959 2.3e-16 93.2 273 25.6
CANSAT56G1041 Cannabis sativa HOM05D006378 ORTHO05D007959 3.0e-16 92.8 197 27.9
CAN.G62.5 Capsicum annuum HOM05D006378 ORTHO05D007959 3.0e-16 92.8 273 26.0
ClCG03G015080 Citrullus lanatus HOM05D006378 ORTHO05D007959 3.0e-16 92.8 197 27.9
Haze_26013 Corylus avellana HOM05D006378 ORTHO05D007959 3.0e-16 92.8 295 24.7
AUR62025249 Chenopodium quinoa HOM05D006378 ORTHO05D007959 3.9e-16 92.4 274 27.4
Medtr2g041640 Medicago truncatula HOM05D006378 ORTHO05D007959 5.1e-16 92.0 296 25.3
MELO3C015521.2 Cucumis melo HOM05D006378 ORTHO05D007959 6.6e-16 91.7 273 26.0
Nitab4.5_0000343g0150 Nicotiana tabacum HOM05D006378 ORTHO05D007959 6.6e-16 91.7 210 28.6
Psat1g134280 Pisum sativum HOM05D006378 ORTHO05D007959 8.7e-16 91.3 296 25.7
QL11p000773 Quercus lobata HOM05D006378 ORTHO05D007959 8.7e-16 91.3 274 27.7
COL.COLO4_18097 Corchorus olitorius HOM05D006378 ORTHO05D007959 1.1e-15 90.9 197 27.9
Oeu035912.1 Olea europaea HOM05D006378 ORTHO05D007959 1.1e-15 90.9 197 26.9
Cfa002988 Carpinus fangiana HOM05D006378 ORTHO05D007959 1.5e-15 90.5 296 25.0
Gohir.A06G076500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 1.5e-15 90.5 197 28.4
MSTRG.19459 Avicennia marina HOM05D006378 ORTHO05D007959 1.9e-15 90.1 274 26.6
CsaV3_1G041050 Cucumis sativus L. HOM05D006378 ORTHO05D007959 1.9e-15 90.1 197 27.4
Lsat_1_v5_gn_8_86460 Lactuca sativa HOM05D006378 ORTHO05D007959 2.5e-15 89.7 197 27.9
MD15G1217600 Malus domestica HOM05D006378 ORTHO05D007959 2.5e-15 89.7 276 25.4
AT1G77550 Arabidopsis thaliana HOM05D006378 ORTHO05D007959 3.3e-15 89.4 197 26.9
Carub.0002s2445 Capsella rubella HOM05D006378 ORTHO05D007959 3.3e-15 89.4 197 26.9
Ca_02206_v3 Cicer arietinum L. HOM05D006378 ORTHO05D007959 3.3e-15 89.4 197 27.9
Atru.chr7.1707 Acer truncatum HOM05D006378 ORTHO05D007959 4.3e-15 89.0 273 25.3
AL2G37770 Arabidopsis lyrata HOM05D006378 ORTHO05D007959 4.3e-15 89.0 197 26.9
ECA236G3597 Erigeron canadensis HOM05D006378 ORTHO05D007959 4.3e-15 89.0 197 28.4
MBI19_g16222_MAGBIO Magnolia biondii HOM05D006378 ORTHO05D007959 4.3e-15 89.0 273 26.0
Sed0026053 Sechium edule HOM05D006378 ORTHO05D007959 4.3e-15 89.0 273 25.6
DCAR_011949 Daucus carota HOM05D006378 ORTHO05D007959 5.6e-15 88.6 275 26.2
CARHR071080 Cardamine hirsuta HOM05D006378 ORTHO05D007959 7.3e-15 88.2 197 26.9
HanXRQChr06g0178331 Helianthus annuus HOM05D006378 ORTHO05D007959 7.3e-15 88.2 274 25.9
PGR044G1219 Punica granatum HOM05D006378 ORTHO05D007959 7.3e-15 88.2 273 26.4
Sabra06G0111000 Salix brachista HOM05D006378 ORTHO05D007959 7.3e-15 88.2 274 25.9
Manes.03G040400 Manihot esculenta HOM05D006378 ORTHO05D007959 9.6e-15 87.8 197 27.9
Peaxi162Scf00127g01816 Petunia axillaris HOM05D006378 ORTHO05D007959 9.6e-15 87.8 273 25.3
CSS0014220 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 1.3e-14 87.4 274 25.2
Cpa.g.sc28.38 Carica papaya HOM05D006378 ORTHO05D007959 1.3e-14 87.4 197 26.9
Ciclev10007418m.g Citrus clementina HOM05D006378 ORTHO05D007959 1.3e-14 87.4 273 26.4
Dinv42394 Davidia involucrata HOM05D006378 ORTHO05D007959 1.3e-14 87.4 197 26.9
Glyma.15G177600 Glycine max HOM05D006378 ORTHO05D007959 1.6e-14 87.0 297 25.3
SalBow6G1560 Salvia bowleyana HOM05D006378 ORTHO05D007959 1.6e-14 87.0 273 26.0
TAR383G0342 Trochodendron aralioides HOM05D006378 ORTHO05D007959 1.6e-14 87.0 298 24.5
Cc06_g12180 Coffea canephora HOM05D006378 ORTHO05D007959 2.1e-14 86.7 197 26.9
Duzib168G0703 Durio zibethinus HOM05D006378 ORTHO05D007959 2.1e-14 86.7 197 27.4
TPR.G28586 Trifolium pratense HOM05D006378 ORTHO05D007959 2.1e-14 86.7 197 26.9
vmacro06342 Vaccinium macrocarpon HOM05D006378 ORTHO05D007959 2.1e-14 86.7 273 25.6
arahy.Tifrunner.gnm1.ann1.CBKZ0V Arachis hypogaea HOM05D006378 ORTHO05D007959 2.8e-14 86.3 296 24.3
CSS0003361 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 2.8e-14 86.3 274 25.2
Pp3c6_19960 Physcomitrium patens HOM05D006378 ORTHO05D007959 2.8e-14 86.3 203 27.6
SMO174G0008 Selaginella moellendorffii HOM05D006378 ORTHO05D007959 2.8e-14 86.3 298 26.8
FAN19G1878 Fragaria x ananassa HOM05D006378 ORTHO05D007959 3.6e-14 85.9 197 25.4
Gohir.D06G075500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 3.6e-14 85.9 197 27.4
Prupe.7G198800 Prunus persica HOM05D006378 ORTHO05D007959 3.6e-14 85.9 200 26.0
Solyc07g041870.3 Solanum lycopersicum HOM05D006378 ORTHO05D007959 3.6e-14 85.9 273 24.2
GSVIVG01015082001 Vitis vinifera HOM05D006378 ORTHO05D007959 3.6e-14 85.9 273 25.3
ATR0598G254 Amborella trichopoda HOM05D006378 ORTHO05D007959 4.8e-14 85.5 299 25.8
arahy.Tifrunner.gnm1.ann1.LZ43MP Arachis hypogaea HOM05D006378 ORTHO05D007959 4.8e-14 85.5 296 24.3
unitig_578.g15677 Utricularia gibba HOM05D006378 ORTHO05D007959 4.8e-14 85.5 257 25.7
Aa31LG2G20840 Aethionema arabicum HOM05D006378 ORTHO05D007959 6.2e-14 85.1 197 26.4
Sopen07g021350 Solanum pennellii HOM05D006378 ORTHO05D007959 6.2e-14 85.1 273 24.5
TWI34G0472 Tripterygium wilfordii HOM05D006378 ORTHO05D007959 6.2e-14 85.1 273 25.3
AagrBONN_evm.TU.Sc2ySwM_117.2900 Anthoceros agrestis HOM05D006378 ORTHO05D007959 8.1e-14 84.7 206 26.7
FAN26G1418 Fragaria x ananassa HOM05D006378 ORTHO05D007959 8.1e-14 84.7 197 24.9
FAN26G3001 Fragaria x ananassa HOM05D006378 ORTHO05D007959 8.1e-14 84.7 197 24.9
PSO135G0915 Papaver somniferum HOM05D006378 ORTHO05D007959 8.1e-14 84.7 197 27.4
Potri.006G141900 Populus trichocarpa HOM05D006378 ORTHO05D007959 8.1e-14 84.7 274 25.5
THA.LOC104826591 Tarenaya hassleriana HOM05D006378 ORTHO05D007959 8.1e-14 84.7 274 25.9
Hma1.2p1_0179F.1_g079520 Hydrangea macrophylla HOM05D006378 ORTHO05D007959 1.1e-13 84.3 275 25.8
FvH4_1g08650 Fragaria vesca HOM05D006378 ORTHO05D007959 1.4e-13 84.0 197 24.9
Lj7C687T7 Lonicera japonica HOM05D006378 ORTHO05D007959 1.4e-13 84.0 215 26.0
RcHm_v2.0_Chr2g0094931 Rosa chinensis HOM05D006378 ORTHO05D007959 1.4e-13 84.0 197 24.9
Lj6g0025012 Lotus japonicus HOM05D006378 ORTHO05D007959 1.8e-13 83.6 197 26.4
Lalb_Chr08g0232591 Lupinus albus HOM05D006378 ORTHO05D007959 1.8e-13 83.6 275 25.1
Sp7g06720 Schrenkiella parvula HOM05D006378 ORTHO05D007959 1.8e-13 83.6 274 25.5
VMungo1309G1044 Vigna mungo HOM05D006378 ORTHO05D007959 1.8e-13 83.6 297 24.9
Rhsim03G0227500 Rhododendron simsii HOM05D006378 ORTHO05D007959 2.4e-13 83.2 295 23.7
Mapoly0113s0055 Marchantia polymorpha HOM05D006378 ORTHO05D007959 3.1e-13 82.8 201 28.9
Cre12.g547700 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 4.0e-13 82.4 247 31.2
BcaB06g26949 Brassica carinata HOM05D006378 ORTHO05D007959 5.3e-13 82.0 274 25.5
BolC4t25998H Brassica oleracea HOM05D006378 ORTHO05D007959 5.3e-13 82.0 274 25.2
Phvul.009G227300 Phaseolus vulgaris HOM05D006378 ORTHO05D007959 5.3e-13 82.0 296 24.0
Hund08780 Selenicereus undatus HOM05D006378 ORTHO05D007959 5.3e-13 82.0 274 26.3
BcaC02g09569 Brassica carinata HOM05D006378 ORTHO05D007959 6.9e-13 81.6 274 25.2
C04p44250 Brassica napus HOM05D006378 ORTHO05D007959 6.9e-13 81.6 274 25.2
Thhalv10003638m.g Eutrema salsugineum HOM05D006378 ORTHO05D007959 6.9e-13 81.6 197 25.9
Cre09.g394769 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 9.0e-13 81.3 354 27.4
A04p10600 Brassica napus HOM05D006378 ORTHO05D007959 1.5e-12 80.5 274 25.2
BraA04t16723Z Brassica rapa HOM05D006378 ORTHO05D007959 1.5e-12 80.5 274 25.2
CBR_g12041 Chara braunii HOM05D006378 ORTHO05D007959 1.5e-12 80.5 303 26.7
Thecc.09G076800 Theobroma cacao HOM05D006378 ORTHO05D007959 2.6e-12 79.7 197 25.4
CBR_g37950 Chara braunii HOM05D000019 ORTHO05D000002 5.8e-12 78.6 112 35.7
Cre13.g591700 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 7.6e-12 78.2 227 28.6
Cre04.g212550 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 1.7e-11 77.0 323 24.1
PRCOL_00006851 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 2.9e-11 76.3 180 32.8
PRCOL_00000498 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 4.9e-11 75.5 358 26.3
Os03g0179000 Oryza sativa ssp. japonica HOM05D006378 ORTHO05D007959 6.4e-11 75.1 197 24.9
AagrBONN_evm.TU.Sc2ySwM_368.1638 Anthoceros agrestis HOM05D066407 ORTHO05D010936 1.1e-10 74.3 148 35.8
Nn8g38637 Nelumbo nucifera HOM05D006378 ORTHO05D007959 1.9e-10 73.6 274 27.0
SEGI_37917 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 2.4e-10 73.2 163 27.6
AagrBONN_evm.TU.Sc2ySwM_368.1640 Anthoceros agrestis HOM05D066407 ORTHO05D010936 4.2e-10 72.4 148 35.1
HPP92_002164 Vanilla planifolia HOM05D006378 ORTHO05D007959 4.2e-10 72.4 273 23.4
CiPaw.03G206400 Carya illinoinensis HOM05D006378 ORTHO05D007959 4.6e-09 68.9 174 29.3
Actinidia38480 Actinidia chinensis HOM05D006378 ORTHO05D007959 5.1e-08 65.5 143 29.4
CBR_g50631 Chara braunii HOM05D008676 ORTHO05D010936 5.1e-08 65.5 149 33.6
MCO13G127 Micromonas commoda HOM05D008676 ORTHO05D048976 1.5e-07 63.9 202 28.7
PRCOL_00000500 Prasinoderma coloniale HOM05D008676 ORTHO05D048976 2.5e-07 63.2 258 25.6


User provided reference genes

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