Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre06.g299450 Chlamydomonas reinhardtii HOM05D004981 ORTHO05D005635 2.2e-270 935.6 733 100.0
SEGI_39436 Sequoiadendron giganteum HOM05D004981 ORTHO05D005635 2.6e-16 91.7 108 50.0
Pp3c22_4170 Physcomitrium patens HOM05D004981 ORTHO05D005635 3.4e-16 91.3 163 41.1
AagrBONN_evm.TU.Sc2ySwM_117.1804 Anthoceros agrestis HOM05D004981 ORTHO05D005635 5.4e-14 84.0 155 38.7
Sabra03G0014800 Salix brachista HOM05D004981 ORTHO05D005635 1.2e-13 82.8 166 36.7
CBR_g31506 Chara braunii HOM05D004981 ORTHO05D005635 6.0e-13 80.5 114 42.1
Mapoly0041s0053 Marchantia polymorpha HOM05D004981 ORTHO05D005635 3.0e-12 78.2 139 39.6
ATR0753G166 Amborella trichopoda HOM05D004981 ORTHO05D005635 5.1e-12 77.4 91 46.2
CANSAT11G0061 Cannabis sativa HOM05D004981 ORTHO05D005635 8.6e-12 76.6 151 34.4
Dinv24195 Davidia involucrata HOM05D004981 ORTHO05D005635 8.6e-12 76.6 175 34.3
Potri.001G205700 Populus trichocarpa HOM05D004981 ORTHO05D005635 8.6e-12 76.6 104 48.1
Cc02_g21590 Coffea canephora HOM05D004981 ORTHO05D005635 1.1e-11 76.3 105 42.9
Cfa005605 Carpinus fangiana HOM05D004981 ORTHO05D005635 1.9e-11 75.5 105 42.9
Eucgr.I02666 Eucalyptus grandis HOM05D004981 ORTHO05D005635 2.5e-11 75.1 161 36.6
Potri.003G023700 Populus trichocarpa HOM05D004981 ORTHO05D005635 5.6e-11 73.9 166 36.1
QL11p020696 Quercus lobata HOM05D004981 ORTHO05D005635 5.6e-11 73.9 144 37.5
Gohir.A13G067000 Gossypium hirsutum HOM05D004981 ORTHO05D005635 7.3e-11 73.6 163 36.2
Gohir.D13G054600 Gossypium hirsutum HOM05D004981 ORTHO05D005635 7.3e-11 73.6 163 36.2
Gorai.013G061400 Gossypium raimondii HOM05D004981 ORTHO05D005635 7.3e-11 73.6 163 36.2
Prupe.8G061500 Prunus persica HOM05D004981 ORTHO05D005635 7.3e-11 73.6 159 36.5
GSVIVG01029180001 Vitis vinifera HOM05D004981 ORTHO05D005635 7.3e-11 73.6 105 41.9
CDE10G0645 Ceratophyllum demersum HOM05D004981 ORTHO05D005635 9.5e-11 73.2 103 41.7
Lj5A239G83 Lonicera japonica HOM05D004981 ORTHO05D005635 9.5e-11 73.2 99 43.4
PGR142G3166 Punica granatum HOM05D004981 ORTHO05D005635 9.5e-11 73.2 153 35.9
Actinidia28057 Actinidia chinensis HOM05D004981 ORTHO05D007483 2.1e-10 72.0 104 43.3
CsaV3_7G006460 Cucumis sativus L. HOM05D004981 ORTHO05D005635 2.8e-10 71.6 163 35.6
AUR62010122 Chenopodium quinoa HOM05D004981 ORTHO05D005635 3.6e-10 71.2 130 36.9
Duzib248G0633 Durio zibethinus HOM05D004981 ORTHO05D005635 3.6e-10 71.2 132 37.9
MELO3C018646.2 Cucumis melo HOM05D004981 ORTHO05D005635 4.7e-10 70.9 163 36.2
Manes.06G012400 Manihot esculenta HOM05D004981 ORTHO05D005635 4.7e-10 70.9 162 36.4
TWI59G1067 Tripterygium wilfordii HOM05D004981 ORTHO05D005635 4.7e-10 70.9 137 38.7
Nn5g30124 Nelumbo nucifera HOM05D004981 ORTHO05D005635 6.2e-10 70.5 158 32.9
Thecc.02G139100 Theobroma cacao HOM05D004981 ORTHO05D005635 6.2e-10 70.5 159 35.2
Cpa.g.sc49.24 Carica papaya HOM05D004981 ORTHO05D005635 8.1e-10 70.1 115 40.0
CiPaw.06G153000 Carya illinoinensis HOM05D004981 ORTHO05D005635 1.1e-09 69.7 105 40.0
Peaxi162Scf00152g01024 Petunia axillaris HOM05D004981 ORTHO05D005635 1.1e-09 69.7 126 38.1
Dinv09034 Davidia involucrata HOM05D004981 ORTHO05D005635 1.4e-09 69.3 107 42.1
Sabra01G0158000 Salix brachista HOM05D004981 ORTHO05D005635 1.4e-09 69.3 191 32.5
SalBow5G0436 Salvia bowleyana HOM05D004981 ORTHO05D005635 1.4e-09 69.3 103 43.7
Sed0011642 Sechium edule HOM05D004981 ORTHO05D005635 1.4e-09 69.3 115 38.3
Nitab4.5_0008051g0010 Nicotiana tabacum HOM05D004981 ORTHO05D005635 1.8e-09 68.9 139 37.4
THA.LOC104818438 Tarenaya hassleriana HOM05D004981 ORTHO05D005635 1.8e-09 68.9 245 28.2
TAR114G0002 Trochodendron aralioides HOM05D004981 ORTHO05D005635 1.8e-09 68.9 128 39.1
arahy.Tifrunner.gnm1.ann1.NS4PA6 Arachis hypogaea HOM05D004981 ORTHO05D005635 2.3e-09 68.6 174 32.2
arahy.Tifrunner.gnm1.ann1.NXB9BB Arachis hypogaea HOM05D004981 ORTHO05D005635 2.3e-09 68.6 174 32.2
Duzib132G0770 Durio zibethinus HOM05D004981 ORTHO05D005635 2.3e-09 68.6 99 42.4
Sc20g0002060 Simmondsia chinensis HOM05D004981 ORTHO05D005635 2.3e-09 68.6 107 40.2
ClCG09G015370 Citrullus lanatus HOM05D004981 ORTHO05D005635 3.1e-09 68.2 165 35.8
Glyma.15G053300 Glycine max HOM05D004981 ORTHO05D005635 4.0e-09 67.8 110 38.2
Atru.chr5.2124 Acer truncatum HOM05D004981 ORTHO05D005635 5.2e-09 67.4 104 41.3
Sopen04g004240 Solanum pennellii HOM05D004981 ORTHO05D005635 5.2e-09 67.4 134 36.6
CSS0034779 Camellia sinensis var. sinensis HOM05D004981 ORTHO05D005635 8.9e-09 66.6 108 38.0
Ca_00133_v3 Cicer arietinum L. HOM05D004981 ORTHO05D005635 8.9e-09 66.6 91 41.8
Glyma.08G179200 Glycine max HOM05D004981 ORTHO05D005635 8.9e-09 66.6 110 37.3
Lj6g0025255 Lotus japonicus HOM05D004981 ORTHO05D005635 8.9e-09 66.6 91 44.0
Solyc04g009060.4 Solanum lycopersicum HOM05D004981 ORTHO05D005635 8.9e-09 66.6 137 36.5
CAN.G274.6 Capsicum annuum HOM05D004981 ORTHO05D005635 1.5e-08 65.9 116 39.7
MBI02_g08724_MAGBIO Magnolia biondii HOM05D004981 ORTHO05D005635 1.5e-08 65.9 99 41.4
MD05G1045100 Malus domestica HOM05D004981 ORTHO05D005635 1.5e-08 65.9 161 36.0
PGSC0003DMG400011507 Solanum tuberosum HOM05D004981 ORTHO05D005635 2.0e-08 65.5 139 36.0
Hma1.2p1_0704F.1_g206680 Hydrangea macrophylla HOM05D004981 ORTHO05D005635 3.4e-08 64.7 92 39.1
Oeu047361.1 Olea europaea HOM05D004981 ORTHO05D005635 3.4e-08 64.7 91 42.9
Rhsim05G0107500 Rhododendron simsii HOM05D004981 ORTHO05D005635 3.4e-08 64.7 91 42.9
Rhsim05G0107600 Rhododendron simsii HOM05D004981 ORTHO05D005635 3.4e-08 64.7 91 42.9
DCAR_021855 Daucus carota HOM05D004981 ORTHO05D005635 5.8e-08 63.9 104 36.5
FAN08G0200 Fragaria x ananassa HOM05D004981 ORTHO05D005635 5.8e-08 63.9 140 33.6
SGA_v2.0_scaffold83G26298 Striga asiatica HOM05D004981 ORTHO05D005635 5.8e-08 63.9 91 41.8
vmacro19928 Vaccinium macrocarpon HOM05D004981 ORTHO05D005635 5.8e-08 63.9 91 42.9
Aqoxy6G00803 Aquilegia oxysepala HOM05D004981 ORTHO05D005635 7.5e-08 63.5 169 32.5
TPR.G21754 Trifolium pratense HOM05D004981 ORTHO05D005635 7.5e-08 63.5 92 44.6
TPR.G9514 Trifolium pratense HOM05D004981 ORTHO05D005635 7.5e-08 63.5 91 41.8
EL10Ac9g21471 Beta vulgaris HOM05D004981 ORTHO05D005635 9.9e-08 63.2 94 42.6
Gohir.A03G173700 Gossypium hirsutum HOM05D004981 ORTHO05D005635 9.9e-08 63.2 159 31.4
SMO356G0631 Selaginella moellendorffii HOM05D004981 ORTHO05D005635 1.3e-07 62.8 153 33.3
VMungo0540G0644 Vigna mungo HOM05D004981 ORTHO05D005635 1.3e-07 62.8 103 41.7
FAN04G0403 Fragaria x ananassa HOM05D004981 ORTHO05D005635 1.7e-07 62.4 140 33.6
MD14G1166200 Malus domestica HOM05D004981 ORTHO05D005635 1.7e-07 62.4 148 37.2
FvH4_5g07000 Fragaria vesca HOM05D004981 ORTHO05D005635 2.2e-07 62.0 139 32.4
FAN18G1425 Fragaria x ananassa HOM05D004981 ORTHO05D005635 2.2e-07 62.0 140 33.6
RcHm_v2.0_Chr7g0191681 Rosa chinensis HOM05D004981 ORTHO05D005635 2.2e-07 62.0 98 39.8
Oeu011769.5 Olea europaea HOM05D004981 ORTHO05D005635 2.9e-07 61.6 91 41.8
Psat1g216680 Pisum sativum HOM05D004981 ORTHO05D005635 2.9e-07 61.6 91 40.7
MSTRG.20297 Avicennia marina HOM05D004981 ORTHO05D005635 3.7e-07 61.2 97 42.3
BcaB08g37209 Brassica carinata HOM05D004981 ORTHO05D005635 3.7e-07 61.2 93 41.9
PSO781G0052 Papaver somniferum HOM05D004981 ORTHO05D005635 6.4e-07 60.5 99 39.4
Hund00058 Selenicereus undatus HOM05D004981 ORTHO05D005635 6.4e-07 60.5 117 38.5
Ciclev10025761m.g Citrus clementina HOM05D004981 ORTHO05D005635 8.3e-07 60.1 187 29.4
Lalb_Chr20g0123041 Lupinus albus HOM05D004981 ORTHO05D005635 8.3e-07 60.1 162 31.5
Phvul.006G206700 Phaseolus vulgaris HOM05D004981 ORTHO05D005635 8.3e-07 60.1 101 36.6
Gohir.D02G196800 Gossypium hirsutum HOM05D004981 ORTHO05D005635 1.1e-06 59.7 140 33.6
Gorai.005G219800 Gossypium raimondii HOM05D004981 ORTHO05D005635 1.1e-06 59.7 140 33.6
COL.COLO4_24958 Corchorus olitorius HOM05D004981 ORTHO05D005635 1.4e-06 59.3 114 36.0
HanXRQChr16g0514321 Helianthus annuus HOM05D004981 ORTHO05D005635 1.4e-06 59.3 96 38.5
COL.COLO4_15286 Corchorus olitorius HOM05D004981 ORTHO05D005635 1.9e-06 58.9 156 32.1
Nitab4.5_0000480g0020 Nicotiana tabacum HOM05D004981 ORTHO05D005635 1.9e-06 58.9 70 48.6
Migut.B00612 Erythranthe guttata HOM05D004981 ORTHO05D005635 2.4e-06 58.5 88 44.3
Prupe.5G160300 Prunus persica HOM05D004981 ORTHO05D005635 3.2e-06 58.2 69 44.9
Zm00001eb311320 Zea mays HOM05D004981 ORTHO05D005635 3.2e-06 58.2 155 34.2
HPP92_013108 Vanilla planifolia HOM05D004981 ORTHO05D005635 4.1e-06 57.8 151 31.1
Aa31LG3G17630 Aethionema arabicum HOM05D004981 ORTHO05D005635 5.4e-06 57.4 101 39.6
Ah.01g009580 Amaranthus hybridus HOM05D004981 ORTHO05D005635 7.1e-06 57.0 54 53.7


User provided reference genes

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