Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre06.g294800 Chlamydomonas reinhardtii HOM05D005699 ORTHO05D007496 4.9e-163 577.8 301 100.0
MCO15G637 Micromonas commoda HOM05D005699 ORTHO05D007496 5.7e-71 271.9 281 60.5
DCAR_013779 Daucus carota HOM05D005699 ORTHO05D007496 1.1e-58 231.1 297 45.8
AagrBONN_evm.TU.Sc2ySwM_228.4605 Anthoceros agrestis HOM05D005699 ORTHO05D007496 5.6e-58 228.8 270 50.4
CBR_g26242 Chara braunii HOM05D005699 ORTHO05D007496 1.6e-57 227.3 260 52.7
unitig_37.g12557 Utricularia gibba HOM05D005699 ORTHO05D007496 1.6e-57 227.3 238 52.1
TAR629G2232 Trochodendron aralioides HOM05D005699 ORTHO05D007496 1.1e-56 224.6 237 52.7
GSVIVG01014100001 Vitis vinifera HOM05D005699 ORTHO05D007496 1.4e-56 224.2 238 51.3
SMO331G0093 Selaginella moellendorffii HOM05D005699 ORTHO05D007496 1.8e-56 223.8 230 53.0
Aqoxy1G01911 Aquilegia oxysepala HOM05D005699 ORTHO05D007496 3.1e-56 223.0 242 52.1
Migut.M00694 Erythranthe guttata HOM05D005699 ORTHO05D007496 3.1e-56 223.0 237 53.6
Ciclev10021126m.g Citrus clementina HOM05D005699 ORTHO05D007496 4.0e-56 222.6 237 53.2
Solyc07g062180.4 Solanum lycopersicum HOM05D005699 ORTHO05D007496 5.2e-56 222.2 290 45.2
EL10Ac4g08415 Beta vulgaris HOM05D005699 ORTHO05D007496 8.9e-56 221.5 242 50.8
Ah.04g164050 Amaranthus hybridus HOM05D005699 ORTHO05D007496 1.5e-55 220.7 241 50.6
Hma1.2p1_0050F.1_g028850 Hydrangea macrophylla HOM05D005699 ORTHO05D007496 1.5e-55 220.7 242 51.7
Prupe.4G156800 Prunus persica HOM05D005699 ORTHO05D007496 1.5e-55 220.7 242 52.1
Cc05_g10740 Coffea canephora HOM05D005699 ORTHO05D007496 2.0e-55 220.3 238 52.5
AUR62019646 Chenopodium quinoa HOM05D005699 ORTHO05D007496 2.6e-55 219.9 241 51.5
MD11G1269700 Malus domestica HOM05D005699 ORTHO05D007496 2.6e-55 219.9 305 43.9
Potri.011G105700 Populus trichocarpa HOM05D005699 ORTHO05D007496 2.6e-55 219.9 312 42.3
Rhsim06G0211500 Rhododendron simsii HOM05D005699 ORTHO05D007496 2.6e-55 219.9 303 44.9
CAN.G375.48 Capsicum annuum HOM05D005699 ORTHO05D007496 3.4e-55 219.5 316 41.5
MD03G1247900 Malus domestica HOM05D005699 ORTHO05D007496 3.4e-55 219.5 242 49.6
Gohir.D11G303400 Gossypium hirsutum HOM05D005699 ORTHO05D007496 4.4e-55 219.2 243 50.2
Gorai.007G331300 Gossypium raimondii HOM05D005699 ORTHO05D007496 4.4e-55 219.2 243 50.2
AUR62039586 Chenopodium quinoa HOM05D005699 ORTHO05D007496 5.8e-55 218.8 241 51.5
PGR083G0120 Punica granatum HOM05D005699 ORTHO05D007496 5.8e-55 218.8 237 51.1
Lj8A146G72 Lonicera japonica HOM05D005699 ORTHO05D007496 7.5e-55 218.4 292 44.9
Cpa.g.sc77.58 Carica papaya HOM05D005699 ORTHO05D007496 9.8e-55 218.0 238 50.8
FAN25G0494 Fragaria x ananassa HOM05D005699 ORTHO05D007496 9.8e-55 218.0 242 51.2
Oeu010029.1 Olea europaea HOM05D005699 ORTHO05D007496 9.8e-55 218.0 242 50.0
Actinidia12601 Actinidia chinensis HOM05D005699 ORTHO05D007496 1.3e-54 217.6 237 51.1
HanXRQChr13g0389711 Helianthus annuus HOM05D005699 ORTHO05D007496 1.3e-54 217.6 242 50.0
MBI06_g08519_MAGBIO Magnolia biondii HOM05D005699 ORTHO05D007496 1.3e-54 217.6 270 48.5
RcHm_v2.0_Chr5g0029561 Rosa chinensis HOM05D005699 ORTHO05D007496 1.3e-54 217.6 242 51.7
FAN21G2533 Fragaria x ananassa HOM05D005699 ORTHO05D007496 1.7e-54 217.2 242 51.2
Gohir.A11G289100 Gossypium hirsutum HOM05D005699 ORTHO05D007496 1.7e-54 217.2 243 49.4
Mapoly0056s0015 Marchantia polymorpha HOM05D005699 ORTHO05D007496 1.7e-54 217.2 236 52.5
Phvul.005G076800 Phaseolus vulgaris HOM05D005699 ORTHO05D007496 1.7e-54 217.2 254 49.6
Dinv13365 Davidia involucrata HOM05D005699 ORTHO05D007496 2.2e-54 216.9 237 50.2
FAN11G1539 Fragaria x ananassa HOM05D005699 ORTHO05D007496 2.2e-54 216.9 242 51.2
FAN16G3421 Fragaria x ananassa HOM05D005699 ORTHO05D007496 2.2e-54 216.9 242 51.2
Sabra11G0080500 Salix brachista HOM05D005699 ORTHO05D007496 2.2e-54 216.9 247 48.2
Thecc.07G132200 Theobroma cacao HOM05D005699 ORTHO05D007496 2.2e-54 216.9 247 49.4
Carub.0002s2547 Capsella rubella HOM05D005699 ORTHO05D007496 2.9e-54 216.5 243 49.4
A07p43890 Brassica napus HOM05D005699 ORTHO05D007496 3.7e-54 216.1 307 42.7
CsaV3_4G008250 Cucumis sativus L. HOM05D005699 ORTHO05D007496 4.9e-54 215.7 256 48.8
Nitab4.5_0000347g0060 Nicotiana tabacum HOM05D005699 ORTHO05D007496 4.9e-54 215.7 237 50.6
PSO541G1284 Papaver somniferum HOM05D005699 ORTHO05D007496 4.9e-54 215.7 236 51.3
Atru.chr2.2008 Acer truncatum HOM05D005699 ORTHO05D007496 6.4e-54 215.3 269 47.6
AL2G39020 Arabidopsis lyrata HOM05D005699 ORTHO05D007496 6.4e-54 215.3 243 49.0
Ca_03931_v3 Cicer arietinum L. HOM05D005699 ORTHO05D007496 6.4e-54 215.3 236 53.0
Os01g0729100 Oryza sativa ssp. japonica HOM05D005699 ORTHO05D007496 6.4e-54 215.3 237 51.5
Peaxi162Scf00111g01334 Petunia axillaris HOM05D005699 ORTHO05D007496 6.4e-54 215.3 284 44.7
THA.LOC104813995 Tarenaya hassleriana HOM05D005699 ORTHO05D007496 6.4e-54 215.3 242 48.8
Aa31LG4G2340 Aethionema arabicum HOM05D005699 ORTHO05D007496 8.3e-54 214.9 242 50.0
AT1G78620 Arabidopsis thaliana HOM05D005699 ORTHO05D007496 8.3e-54 214.9 243 49.0
CARHR072140 Cardamine hirsuta HOM05D005699 ORTHO05D007496 8.3e-54 214.9 243 48.6
ECA240G3195 Erigeron canadensis HOM05D005699 ORTHO05D007496 8.3e-54 214.9 242 50.8
Glyma.12G233800 Glycine max HOM05D005699 ORTHO05D007496 8.3e-54 214.9 236 51.3
Lj3g0018973 Lotus japonicus HOM05D005699 ORTHO05D007496 8.3e-54 214.9 241 50.6
Nn3g21006 Nelumbo nucifera HOM05D005699 ORTHO05D007496 8.3e-54 214.9 279 46.6
arahy.Tifrunner.gnm1.ann1.EKI9R8 Arachis hypogaea HOM05D005699 ORTHO05D007496 1.1e-53 214.5 236 50.8
MSTRG.6687 Avicennia marina HOM05D005699 ORTHO05D007496 1.1e-53 214.5 240 50.0
BcaC08g47425 Brassica carinata HOM05D005699 ORTHO05D007496 1.1e-53 214.5 243 48.6
BraA07t31896Z Brassica rapa HOM05D005699 ORTHO05D007496 1.1e-53 214.5 243 48.1
CiPaw.12G110500 Carya illinoinensis HOM05D005699 ORTHO05D007496 1.9e-53 213.8 234 50.9
Glyma.13G265200 Glycine max HOM05D005699 ORTHO05D007496 1.9e-53 213.8 236 51.3
Medtr2g073380 Medicago truncatula HOM05D005699 ORTHO05D007496 1.9e-53 213.8 236 52.1
COL.COLO4_17478 Corchorus olitorius HOM05D005699 ORTHO05D007496 3.2e-53 213.0 241 48.5
HanXRQChr14g0439361 Helianthus annuus HOM05D005699 ORTHO05D007496 3.2e-53 213.0 255 48.6
Psat5g233280 Pisum sativum HOM05D005699 ORTHO05D007496 3.2e-53 213.0 236 51.3
C06p52520 Brassica napus HOM05D005699 ORTHO05D007496 5.4e-53 212.2 243 47.7
CSS0007542 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 5.4e-53 212.2 237 51.1
Manes.15G097700 Manihot esculenta HOM05D005699 ORTHO05D007496 5.4e-53 212.2 237 50.2
CSS0029451 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 7.0e-53 211.8 235 49.4
Thhalv10018838m.g Eutrema salsugineum HOM05D005699 ORTHO05D007496 7.0e-53 211.8 243 48.1
Sp5g33710 Schrenkiella parvula HOM05D005699 ORTHO05D007496 1.2e-52 211.1 243 48.1
BcaC08g47427 Brassica carinata HOM05D005699 ORTHO05D007496 1.6e-52 210.7 243 47.7
Cfa019514 Carpinus fangiana HOM05D005699 ORTHO05D007496 1.6e-52 210.7 236 49.2
Lalb_Chr20g0109131 Lupinus albus HOM05D005699 ORTHO05D007496 1.6e-52 210.7 236 50.0
VMungo1080G0954 Vigna mungo HOM05D005699 ORTHO05D007496 1.6e-52 210.7 236 50.8
SalBow7G3647 Salvia bowleyana HOM05D005699 ORTHO05D007496 2.1e-52 210.3 237 48.5
Eucgr.F01366 Eucalyptus grandis HOM05D005699 ORTHO05D007496 4.6e-52 209.1 237 49.8
Potri.001G384300 Populus trichocarpa HOM05D005699 ORTHO05D007496 6.0e-52 208.8 239 49.4
Sed0019309 Sechium edule HOM05D005699 ORTHO05D007496 1.0e-51 208.0 304 43.1
BolC6t40271H Brassica oleracea HOM05D005699 ORTHO05D007496 5.1e-51 205.7 253 46.2
Pp3c13_15320 Physcomitrium patens HOM05D005699 ORTHO05D007496 5.1e-51 205.7 257 48.2
SGA_v2.0_scaffold73G24389 Striga asiatica HOM05D005699 ORTHO05D007496 5.1e-51 205.7 258 45.7
MSTRG.14252 Avicennia marina HOM05D005699 ORTHO05D007496 6.6e-51 205.3 237 48.1
Haze_09244 Corylus avellana HOM05D005699 ORTHO05D007496 8.6e-51 204.9 236 48.7
DCAR_019613 Daucus carota HOM05D005699 ORTHO05D007496 3.3e-50 203.0 237 48.1
TWI39G0441 Tripterygium wilfordii HOM05D005699 ORTHO05D007496 5.6e-50 202.2 236 48.7
CSS0028539 Camellia sinensis var. sinensis HOM05D005699 ORTHO05D007496 9.5e-50 201.4 256 47.3
Lj1A824T64 Lonicera japonica HOM05D005699 ORTHO05D007496 9.5e-50 201.4 237 49.4
Nitab4.5_0003230g0020 Nicotiana tabacum HOM05D005699 ORTHO05D007496 2.1e-49 200.3 278 43.5
Pp3c13_3550 Physcomitrium patens HOM05D005699 ORTHO05D007496 1.8e-48 197.2 233 47.2
QL08p037175 Quercus lobata HOM05D005699 ORTHO05D007496 1.8e-48 197.2 219 51.1
QL08p037250 Quercus lobata HOM05D005699 ORTHO05D007496 1.8e-48 197.2 219 51.1
unitig_746.g26834 Utricularia gibba HOM05D005699 ORTHO05D007496 8.9e-48 194.9 243 45.3
Sabra11G0074900 Salix brachista HOM05D005699 ORTHO05D007496 1.2e-47 194.5 214 48.6
SalBow4G2873 Salvia bowleyana HOM05D005699 ORTHO05D007496 1.5e-47 194.1 204 52.9
ATR0213G027 Amborella trichopoda HOM05D005699 ORTHO05D007496 2.0e-47 193.7 209 50.2
Sc16g0007730 Simmondsia chinensis HOM05D005699 ORTHO05D007496 2.0e-47 193.7 181 56.9
Hma1.2p1_0050F.1_g028840 Hydrangea macrophylla HOM05D005699 ORTHO05D007496 3.4e-47 193.0 179 56.4
FvH4_3g17770 Fragaria vesca HOM05D005699 ORTHO05D007496 9.9e-47 191.4 181 56.4
PGSC0003DMG400007091 Solanum tuberosum HOM05D005699 ORTHO05D007496 2.2e-46 190.3 349 37.8
Lsat_1_v5_gn_9_100441 Lactuca sativa HOM05D005699 ORTHO05D007496 4.9e-46 189.1 211 50.7
Manes.03G092700 Manihot esculenta HOM05D005699 ORTHO05D007496 5.4e-45 185.7 238 44.1
TPR.G13095 Trifolium pratense HOM05D005699 ORTHO05D007496 1.6e-44 184.1 191 51.8
MELO3C016111.2 Cucumis melo HOM05D005699 ORTHO05D007496 7.8e-44 181.8 174 53.4
CiPaw.11G155600 Carya illinoinensis HOM05D005699 ORTHO05D007496 1.7e-43 180.6 167 55.7
PRCOL_00000954 Prasinoderma coloniale HOM05D005699 ORTHO05D007496 5.1e-43 179.1 272 43.8
CDE02G0824 Ceratophyllum demersum HOM05D005699 ORTHO05D007496 3.3e-42 176.4 212 49.5
ClCG07G010100 Citrullus lanatus HOM05D005699 ORTHO05D007496 5.6e-42 175.6 189 53.4
Sopen07g030460 Solanum pennellii HOM05D005699 ORTHO05D007496 1.2e-39 167.9 180 52.8
SEGI_05295 Sequoiadendron giganteum HOM05D005699 ORTHO05D007496 3.3e-34 149.8 140 55.7
Zm00001eb361870 Zea mays HOM05D005699 ORTHO05D007496 4.7e-33 146.0 192 46.9
Actinidia37024 Actinidia chinensis HOM05D005699 ORTHO05D007496 2.0e-31 140.6 134 53.0
SHI27569 Sapria himalayana HOM05D005699 ORTHO05D007496 5.8e-31 139.0 283 33.6
vmacro11968 Vaccinium macrocarpon HOM05D005699 ORTHO05D007496 5.1e-27 125.9 199 39.7
HPP92_006376 Vanilla planifolia HOM05D005699 ORTHO05D007496 2.0e-23 114.0 138 48.6
CDE06G0498 Ceratophyllum demersum HOM05D005699 ORTHO05D007496 3.8e-14 83.2 282 27.3
Medtr7g055620 Medicago truncatula HOM05D005699 ORTHO05D007496 6.4e-14 82.4 95 51.6


User provided reference genes

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