Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre06.g294650 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 3.7e-249 864.4 423 100.0
CBR_g51244 Chara braunii HOM05D000019 ORTHO05D000353 1.5e-85 320.9 318 52.2
Cre01.g005150 Chlamydomonas reinhardtii HOM05D004400 ORTHO05D005479 4.5e-37 159.8 407 31.2
SMO228G0177 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 1.3e-36 158.3 352 29.3
Mapoly0001s0436 Marchantia polymorpha HOM05D004400 ORTHO05D005479 1.6e-34 151.4 348 29.6
Psat4g095360 Pisum sativum HOM05D004400 ORTHO05D005479 1.6e-34 151.4 351 29.6
SEGI_24220 Sequoiadendron giganteum HOM05D004400 ORTHO05D005479 3.5e-34 150.2 353 29.5
SGA_v2.0_scaffold3G01468 Striga asiatica HOM05D004400 ORTHO05D005479 3.5e-34 150.2 351 30.2
Phvul.006G029100 Phaseolus vulgaris HOM05D004400 ORTHO05D005479 1.0e-33 148.7 352 29.8
AagrBONN_evm.TU.Sc2ySwM_344.3612 Anthoceros agrestis HOM05D004400 ORTHO05D005479 1.3e-33 148.3 351 30.2
CANSAT64G2455 Cannabis sativa HOM05D004400 ORTHO05D005479 1.3e-33 148.3 351 29.9
Cc01_g05790 Coffea canephora HOM05D004400 ORTHO05D005479 1.3e-33 148.3 351 29.6
Lalb_Chr17g0348031 Lupinus albus HOM05D004400 ORTHO05D005479 1.3e-33 148.3 351 29.3
CBR_g39952 Chara braunii HOM05D004400 ORTHO05D005479 1.8e-33 147.9 351 29.9
Os08g0502700 Oryza sativa ssp. japonica HOM05D004400 ORTHO05D005479 1.8e-33 147.9 351 29.6
Cpa.g.sc892.2 Carica papaya HOM05D004400 ORTHO05D005479 3.0e-33 147.1 351 29.6
Medtr3g053890 Medicago truncatula HOM05D004400 ORTHO05D005479 3.0e-33 147.1 351 29.1
TPR.G8487 Trifolium pratense HOM05D004400 ORTHO05D005479 3.0e-33 147.1 351 28.8
unitig_8.g2992 Utricularia gibba HOM05D004400 ORTHO05D005479 3.0e-33 147.1 351 29.1
Gohir.A13G217500 Gossypium hirsutum HOM05D004400 ORTHO05D005479 3.9e-33 146.7 351 29.6
Mapoly0066s0091 Marchantia polymorpha HOM05D004400 ORTHO05D005479 3.9e-33 146.7 346 29.2
Pp3c21_12100 Physcomitrium patens HOM05D004400 ORTHO05D005479 3.9e-33 146.7 351 29.9
Aqoxy2G00323 Aquilegia oxysepala HOM05D004400 ORTHO05D005479 5.1e-33 146.4 361 29.4
Ca_13793_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 5.1e-33 146.4 351 29.3
LjContig00049g0014500 Lotus japonicus HOM05D004400 ORTHO05D005479 5.1e-33 146.4 351 29.1
CAN.G484.7 Capsicum annuum HOM05D004400 ORTHO05D005479 6.7e-33 146.0 353 30.3
Lsat_1_v5_gn_5_64980 Lactuca sativa HOM05D004400 ORTHO05D005479 6.7e-33 146.0 351 29.6
Lalb_Chr14g0365141 Lupinus albus HOM05D004400 ORTHO05D005479 6.7e-33 146.0 351 29.6
Psat2g019120 Pisum sativum HOM05D004400 ORTHO05D005479 6.7e-33 146.0 351 29.1
Sp3g26830 Schrenkiella parvula HOM05D004400 ORTHO05D005479 6.7e-33 146.0 351 29.3
VMungo0540G1800 Vigna mungo HOM05D004400 ORTHO05D005479 6.7e-33 146.0 352 29.3
Gohir.D13G221100 Gossypium hirsutum HOM05D004400 ORTHO05D005479 8.7e-33 145.6 351 29.3
Gorai.013G252200 Gossypium raimondii HOM05D004400 ORTHO05D005479 8.7e-33 145.6 351 29.3
Medtr5g090070 Medicago truncatula HOM05D004400 ORTHO05D005479 8.7e-33 145.6 351 28.5
Nitab4.5_0001925g0250 Nicotiana tabacum HOM05D004400 ORTHO05D005479 8.7e-33 145.6 353 30.3
Actinidia16361 Actinidia chinensis HOM05D004400 ORTHO05D005479 1.1e-32 145.2 353 28.6
Glyma.08G302600 Glycine max HOM05D004400 ORTHO05D005479 1.1e-32 145.2 351 29.3
BcaC01g03126 Brassica carinata HOM05D004400 ORTHO05D005479 1.5e-32 144.8 351 29.3
C03p55800 Brassica napus HOM05D004400 ORTHO05D005479 1.5e-32 144.8 351 29.3
BolC3t17861H Brassica oleracea HOM05D004400 ORTHO05D005479 1.5e-32 144.8 351 29.3
Glyma.18G116900 Glycine max HOM05D004400 ORTHO05D005479 1.5e-32 144.8 351 29.3
Nn2g14932 Nelumbo nucifera HOM05D004400 ORTHO05D005479 1.5e-32 144.8 351 29.3
SalBow6G1637 Salvia bowleyana HOM05D004400 ORTHO05D005479 1.5e-32 144.8 351 29.1
SMO117G0208 Selaginella moellendorffii HOM05D004400 ORTHO05D005479 1.5e-32 144.8 352 29.3
BcaC04g23083 Brassica carinata HOM05D004400 ORTHO05D005479 1.9e-32 144.4 351 29.1
A09p10380 Brassica napus HOM05D004400 ORTHO05D005479 1.9e-32 144.4 351 29.1
BraA09t36682Z Brassica rapa HOM05D004400 ORTHO05D005479 1.9e-32 144.4 351 29.1
DCAR_002094 Daucus carota HOM05D004400 ORTHO05D005479 1.9e-32 144.4 348 30.7
MSTRG.17628 Avicennia marina HOM05D004400 ORTHO05D005479 2.5e-32 144.1 351 29.1
C09p12320 Brassica napus HOM05D004400 ORTHO05D005479 2.5e-32 144.1 351 29.1
BolC9t54125H Brassica oleracea HOM05D004400 ORTHO05D005479 2.5e-32 144.1 351 29.1
Thhalv10022711m.g Eutrema salsugineum HOM05D004400 ORTHO05D005479 2.5e-32 144.1 351 29.1
HanXRQChr12g0381201 Helianthus annuus HOM05D004400 ORTHO05D005479 2.5e-32 144.1 351 29.3
Nitab4.5_0011805g0020 Nicotiana tabacum HOM05D004400 ORTHO05D005479 2.5e-32 144.1 353 30.0
PGR102G2835 Punica granatum HOM05D004400 ORTHO05D005479 2.5e-32 144.1 351 29.6
BcaB08g34528 Brassica carinata HOM05D004400 ORTHO05D005479 3.3e-32 143.7 351 29.3
A03p44920 Brassica napus HOM05D004400 ORTHO05D005479 3.3e-32 143.7 351 29.1
BraA03t13629Z Brassica rapa HOM05D004400 ORTHO05D005479 3.3e-32 143.7 351 29.1
CiPaw.13G152600 Carya illinoinensis HOM05D004400 ORTHO05D005479 3.3e-32 143.7 351 29.1
ECA233G2606 Erigeron canadensis HOM05D004400 ORTHO05D005479 3.3e-32 143.7 351 29.1
Rhsim13G0215900 Rhododendron simsii HOM05D004400 ORTHO05D005479 3.3e-32 143.7 351 29.3
TPR.G19354 Trifolium pratense HOM05D004400 ORTHO05D005479 3.3e-32 143.7 356 27.5
Atru.chr3.2806 Acer truncatum HOM05D004400 ORTHO05D005479 4.3e-32 143.3 351 29.3
Aa31sc61G60 Aethionema arabicum HOM05D004400 ORTHO05D005479 4.3e-32 143.3 351 29.1
Gorai.009G074800 Gossypium raimondii HOM05D004400 ORTHO05D005479 4.3e-32 143.3 351 29.6
CsaV3_6G039090 Cucumis sativus L. HOM05D004400 ORTHO05D005479 5.6e-32 142.9 351 30.2
Sed0009312 Sechium edule HOM05D004400 ORTHO05D005479 5.6e-32 142.9 351 30.2
CSS0001177 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 7.4e-32 142.5 351 28.8
CSS0015379 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 7.4e-32 142.5 351 28.8
CiPaw.14G115100 Carya illinoinensis HOM05D004400 ORTHO05D005479 7.4e-32 142.5 351 28.8
AUR62000174 Chenopodium quinoa HOM05D004400 ORTHO05D004881 7.4e-32 142.5 348 30.2
DCAR_029980 Daucus carota HOM05D004400 ORTHO05D005479 7.4e-32 142.5 351 29.6
Carub.0003s2789 Capsella rubella HOM05D004400 ORTHO05D005479 1.3e-31 141.7 353 28.9
AUR62039836 Chenopodium quinoa HOM05D004400 ORTHO05D005479 1.3e-31 141.7 348 30.2
Duzib150G0360 Durio zibethinus HOM05D004400 ORTHO05D005479 1.3e-31 141.7 351 29.1
Gohir.D05G073700 Gossypium hirsutum HOM05D004400 ORTHO05D005479 1.3e-31 141.7 351 29.6
Lj6g0016070 Lotus japonicus HOM05D004400 ORTHO05D005479 1.3e-31 141.7 351 28.8
MD03G1168700 Malus domestica HOM05D004400 ORTHO05D005479 1.3e-31 141.7 351 29.6
Pp3c18_8240 Physcomitrium patens HOM05D004400 ORTHO05D005479 1.3e-31 141.7 351 29.3
Pp3c1_24350 Physcomitrium patens HOM05D004400 ORTHO05D005479 1.3e-31 141.7 353 29.5
Hund07449 Selenicereus undatus HOM05D004400 ORTHO05D005479 1.3e-31 141.7 351 29.9
Sc09g0000960 Simmondsia chinensis HOM05D004400 ORTHO05D005479 1.3e-31 141.7 351 29.1
AT2G13360 Arabidopsis thaliana HOM05D004400 ORTHO05D005479 1.6e-31 141.4 353 28.9
Gohir.A05G070800 Gossypium hirsutum HOM05D004400 ORTHO05D005479 1.6e-31 141.4 351 29.3
PSO339G5023 Papaver somniferum HOM05D004400 ORTHO05D005479 1.6e-31 141.4 351 28.8
PRCOL_00005046 Prasinoderma coloniale HOM05D004400 ORTHO05D005479 2.1e-31 141.0 346 28.0
QL01p017697 Quercus lobata HOM05D004400 ORTHO05D005479 2.1e-31 141.0 351 28.8
Thecc.09G244100 Theobroma cacao HOM05D004400 ORTHO05D005479 2.1e-31 141.0 351 29.1
HPP92_001014 Vanilla planifolia HOM05D004400 ORTHO05D005479 2.1e-31 141.0 351 29.3
Haze_23202 Corylus avellana HOM05D004400 ORTHO05D005479 2.8e-31 140.6 351 28.2
Dinv36191 Davidia involucrata HOM05D004400 ORTHO05D005479 2.8e-31 140.6 368 28.0
MD11G1194500 Malus domestica HOM05D004400 ORTHO05D005479 2.8e-31 140.6 351 28.8
Oeu025899.1 Olea europaea HOM05D004400 ORTHO05D005479 2.8e-31 140.6 351 28.8
PSO384G2058 Papaver somniferum HOM05D004400 ORTHO05D005479 2.8e-31 140.6 351 28.8
FAN21G0985 Fragaria x ananassa HOM05D004400 ORTHO05D005479 3.7e-31 140.2 351 29.3
Hma1.2p1_0115F.1_g056060 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 3.7e-31 140.2 351 28.2
Solyc12g099930.2 Solanum lycopersicum HOM05D004400 ORTHO05D005479 3.7e-31 140.2 353 28.9
Sopen12g034550 Solanum pennellii HOM05D004400 ORTHO05D005479 3.7e-31 140.2 353 28.9
PGSC0003DMG400004652 Solanum tuberosum HOM05D004400 ORTHO05D005479 3.7e-31 140.2 353 28.9
THA.LOC104826484 Tarenaya hassleriana HOM05D004400 ORTHO05D005479 3.7e-31 140.2 351 28.2
ATR0721G062 Amborella trichopoda HOM05D004400 ORTHO05D005479 4.8e-31 139.8 351 28.5
CARHR105160 Cardamine hirsuta HOM05D004400 ORTHO05D005479 4.8e-31 139.8 353 28.6
Ciclev10015490m.g Citrus clementina HOM05D004400 ORTHO05D005479 4.8e-31 139.8 351 27.9
FAN16G1059 Fragaria x ananassa HOM05D004400 ORTHO05D005479 4.8e-31 139.8 351 29.3
FAN25G1578 Fragaria x ananassa HOM05D004400 ORTHO05D005479 4.8e-31 139.8 351 29.3
Hma1.2p1_0922F.1_g236910 Hydrangea macrophylla HOM05D004400 ORTHO05D005479 4.8e-31 139.8 351 28.2
TAR623G1228 Trochodendron aralioides HOM05D004400 ORTHO05D005479 4.8e-31 139.8 351 28.5
Zm00001eb034260 Zea mays HOM05D004400 ORTHO05D005479 4.8e-31 139.8 351 29.3
COL.COLO4_07229 Corchorus olitorius HOM05D004400 ORTHO05D005479 6.2e-31 139.4 351 29.1
Eucgr.B03720 Eucalyptus grandis HOM05D004400 ORTHO05D005479 6.2e-31 139.4 351 28.5
AL3G45260 Arabidopsis lyrata HOM05D004400 ORTHO05D005479 8.2e-31 139.0 353 28.6
CSS0007609 Camellia sinensis var. sinensis HOM05D004400 ORTHO05D005479 8.2e-31 139.0 348 28.7
Cfa009835 Carpinus fangiana HOM05D004400 ORTHO05D005479 8.2e-31 139.0 351 28.2
ClCG02G022970 Citrullus lanatus HOM05D004400 ORTHO05D005479 8.2e-31 139.0 360 29.2
MELO3C015151.2 Cucumis melo HOM05D004400 ORTHO05D005479 8.2e-31 139.0 351 29.1
FvH4_3g28090 Fragaria vesca HOM05D004400 ORTHO05D005479 8.2e-31 139.0 351 29.3
FAN11G2969 Fragaria x ananassa HOM05D004400 ORTHO05D005479 8.2e-31 139.0 351 29.3
MBI13_g29527_MAGBIO Magnolia biondii HOM05D004400 ORTHO05D005479 8.2e-31 139.0 351 28.2
Manes.01G181700 Manihot esculenta HOM05D004400 ORTHO05D005479 8.2e-31 139.0 351 28.5
Manes.02G141600 Manihot esculenta HOM05D004400 ORTHO05D005479 8.2e-31 139.0 351 28.5
RcHm_v2.0_Chr5g0050781 Rosa chinensis HOM05D004400 ORTHO05D005479 1.1e-30 138.7 351 29.1
Potri.009G047700 Populus trichocarpa HOM05D004400 ORTHO05D005479 1.4e-30 138.3 351 28.8
Prupe.4G258800 Prunus persica HOM05D004400 ORTHO05D005479 1.4e-30 138.3 351 28.8
Hund21989 Selenicereus undatus HOM05D004400 ORTHO05D005479 1.8e-30 137.9 351 28.8
GSVIVG01037237001 Vitis vinifera HOM05D004400 ORTHO05D005479 1.8e-30 137.9 322 30.4
arahy.Tifrunner.gnm1.ann1.NTNX6Y Arachis hypogaea HOM05D004400 ORTHO05D005479 2.4e-30 137.5 349 28.4
CsaV3_1G043170 Cucumis sativus L. HOM05D004400 ORTHO05D005479 2.4e-30 137.5 351 29.1
Cfa022418 Carpinus fangiana HOM05D004400 ORTHO05D005479 3.1e-30 137.1 407 25.8
EL10Ac4g10172 Beta vulgaris HOM05D004400 ORTHO05D005479 4.0e-30 136.7 350 29.1
MELO3C014568.2 Cucumis melo HOM05D004400 ORTHO05D005479 4.0e-30 136.7 368 29.6
Duzib170G1108 Durio zibethinus HOM05D004400 ORTHO05D005479 4.0e-30 136.7 351 28.5
Potri.001G253300 Populus trichocarpa HOM05D004400 ORTHO05D005479 5.3e-30 136.3 351 28.8
Ca_06224_v3 Cicer arietinum L. HOM05D004400 ORTHO05D005479 6.9e-30 136.0 351 27.1
TWI75G1130 Tripterygium wilfordii HOM05D004400 ORTHO05D005479 9.0e-30 135.6 351 28.5
Migut.N02365 Erythranthe guttata HOM05D004400 ORTHO05D005479 1.2e-29 135.2 316 30.4
Oeu061291.1 Olea europaea HOM05D004400 ORTHO05D005479 4.5e-29 133.3 296 31.1
arahy.Tifrunner.gnm1.ann1.U6ZXMA Arachis hypogaea HOM05D004400 ORTHO05D005479 7.6e-29 132.5 366 27.6
Lj3A187G31 Lonicera japonica HOM05D004400 ORTHO05D005479 1.0e-28 132.1 365 27.9
Lj3C181G6 Lonicera japonica HOM05D004400 ORTHO05D005479 1.0e-28 132.1 365 27.9
TAR369G0837 Trochodendron aralioides HOM05D004400 ORTHO05D005479 1.1e-27 128.6 294 30.3
Sed0026623 Sechium edule HOM05D004400 ORTHO05D005479 5.5e-27 126.3 311 29.9
Sabra09G0035000 Salix brachista HOM05D004400 ORTHO05D004881 2.1e-26 124.4 347 27.7
vmacro04009 Vaccinium macrocarpon HOM05D004400 ORTHO05D005479 6.1e-26 122.9 390 26.7
Peaxi162Scf00062g00919 Petunia axillaris HOM05D004400 ORTHO05D005479 1.1e-24 118.6 244 32.8
CDE08G1189 Ceratophyllum demersum HOM05D005522 ORTHO05D007414 6.3e-23 112.8 351 26.8
Zm00001eb034570 Zea mays HOM05D004400 ORTHO05D005479 9.0e-22 109.0 211 33.2
Sabra16G0154200 Salix brachista HOM05D004400 ORTHO05D004881 1.5e-21 108.2 347 26.2
Dinv08771 Davidia involucrata HOM05D004400 ORTHO05D005479 7.7e-21 105.9 277 28.5
Medtr5g094410 Medicago truncatula HOM05D004400 ORTHO05D005479 2.2e-20 104.4 318 26.4
Sed0008818 Sechium edule HOM05D004400 ORTHO05D005479 7.2e-19 99.4 267 28.5
Psat5g194960 Pisum sativum HOM05D004400 ORTHO05D005479 3.0e-17 94.0 277 26.4
Pp3s34_610 Physcomitrium patens HOM05D000068 ORTHO05D011688 8.2e-15 85.9 244 24.6
MCO09G648 Micromonas commoda HOM05D058884 ORTHO05D049260 2.4e-14 84.3 363 25.1
Medtr5g067370 Medicago truncatula HOM05D004400 ORTHO05D005479 4.1e-14 83.6 323 24.8
RcHm_v2.0_Chr5g0076081 Rosa chinensis HOM05D004400 ORTHO05D005479 6.9e-14 82.8 230 27.4
Zm00001eb034320 Zea mays HOM05D004400 ORTHO05D005479 2.2e-12 77.8 218 28.9
RcHm_v2.0_Chr2g0095031 Rosa chinensis HOM05D004400 ORTHO05D005479 8.5e-12 75.9 210 26.2
RcHm_v2.0_Chr2g0084601 Rosa chinensis HOM05D004400 ORTHO05D005479 1.1e-11 75.5 210 27.6
Actinidia06950 Actinidia chinensis HOM05D004400 ORTHO05D005479 8.8e-09 65.9 118 30.5


User provided reference genes

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