Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre06.g290000 Chlamydomonas reinhardtii HOM05D006150 ORTHO05D007745 7.8e-177 623.6 304 100.0
Pp3c9_12580 Physcomitrium patens HOM05D006150 ORTHO05D007745 3.2e-77 292.7 296 51.7
HPP92_025744 Vanilla planifolia HOM05D006150 ORTHO05D007745 1.3e-70 270.8 305 50.2
Os07g0495000 Oryza sativa ssp. japonica HOM05D006150 ORTHO05D007745 1.7e-70 270.4 299 49.5
EL10Ac5g12270 Beta vulgaris HOM05D006150 ORTHO05D007745 3.8e-70 269.2 258 51.6
HanXRQChr17g0534011 Helianthus annuus HOM05D006150 ORTHO05D007745 4.9e-70 268.9 258 52.7
Atru.chr9.1206 Acer truncatum HOM05D006150 ORTHO05D007745 6.4e-70 268.5 258 52.7
Zm00001eb322060 Zea mays HOM05D006150 ORTHO05D007745 6.4e-70 268.5 298 49.3
ECA234G2169 Erigeron canadensis HOM05D006150 ORTHO05D007745 1.1e-69 267.7 258 52.3
Eucgr.D02133 Eucalyptus grandis HOM05D006150 ORTHO05D007745 1.1e-69 267.7 257 51.4
Mapoly0072s0097 Marchantia polymorpha HOM05D006150 ORTHO05D007745 1.4e-69 267.3 259 51.4
Medtr4g099290 Medicago truncatula HOM05D006150 ORTHO05D007745 4.2e-69 265.8 259 52.9
MSTRG.6640 Avicennia marina HOM05D006150 ORTHO05D007745 5.4e-69 265.4 259 51.7
Potri.003G083600 Populus trichocarpa HOM05D006150 ORTHO05D007745 7.1e-69 265.0 262 51.5
PGR031G0533 Punica granatum HOM05D006150 ORTHO05D007745 7.1e-69 265.0 258 50.8
Ca_22017_v3 Cicer arietinum L. HOM05D006150 ORTHO05D007745 1.6e-68 263.8 248 54.8
Lj8A277T42 Lonicera japonica HOM05D006150 ORTHO05D007745 2.7e-68 263.1 262 50.8
Glyma.17G148400 Glycine max HOM05D006150 ORTHO05D007745 3.5e-68 262.7 256 52.0
CANSAT21G0710 Cannabis sativa HOM05D006150 ORTHO05D007745 6.0e-68 261.9 291 47.8
Cc08_g11330 Coffea canephora HOM05D006150 ORTHO05D007745 6.0e-68 261.9 258 51.9
COL.COLO4_07285 Corchorus olitorius HOM05D006150 ORTHO05D007745 6.0e-68 261.9 259 51.4
DCAR_008330 Daucus carota HOM05D006150 ORTHO05D007745 6.0e-68 261.9 258 51.6
Duzib084G0008 Durio zibethinus HOM05D006150 ORTHO05D007745 6.0e-68 261.9 258 51.6
PGSC0003DMG400026243 Solanum tuberosum HOM05D006150 ORTHO05D007745 6.0e-68 261.9 258 50.8
CDE12G0966 Ceratophyllum demersum HOM05D006150 ORTHO05D007745 7.8e-68 261.5 253 51.0
TWI60G0542 Tripterygium wilfordii HOM05D006150 ORTHO05D007745 7.8e-68 261.5 258 49.6
VMungo0251G1767 Vigna mungo HOM05D006150 ORTHO05D007745 1.0e-67 261.2 256 51.6
Hma1.2p1_0570F.1_g180430 Hydrangea macrophylla HOM05D006150 ORTHO05D007745 1.3e-67 260.8 261 51.0
SalBow7G3619 Salvia bowleyana HOM05D006150 ORTHO05D007745 1.3e-67 260.8 260 51.9
Ah.12g053980 Amaranthus hybridus HOM05D006150 ORTHO05D007745 1.7e-67 260.4 258 50.4
Carub.0007s2437 Capsella rubella HOM05D006150 ORTHO05D007745 1.7e-67 260.4 258 50.8
AL7G37660 Arabidopsis lyrata HOM05D006150 ORTHO05D007745 2.3e-67 260.0 258 50.4
Ciclev10021365m.g Citrus clementina HOM05D006150 ORTHO05D007745 3.0e-67 259.6 258 50.0
Thecc.03G240100 Theobroma cacao HOM05D006150 ORTHO05D007745 3.0e-67 259.6 244 53.7
THA.LOC104807929 Tarenaya hassleriana HOM05D006150 ORTHO05D007745 3.9e-67 259.2 259 50.2
Lalb_Chr09g0329771 Lupinus albus HOM05D006150 ORTHO05D007745 5.1e-67 258.8 253 51.4
CAN.G572.11 Capsicum annuum HOM05D006150 ORTHO05D007745 6.6e-67 258.5 258 50.4
SEGI_33649 Sequoiadendron giganteum HOM05D006150 ORTHO05D007745 6.6e-67 258.5 267 48.7
Phvul.003G225600 Phaseolus vulgaris HOM05D006150 ORTHO05D007745 8.7e-67 258.1 252 51.2
CARHR223610 Cardamine hirsuta HOM05D006150 ORTHO05D007745 1.1e-66 257.7 258 51.2
Glyma.05G066500 Glycine max HOM05D006150 ORTHO05D007745 1.1e-66 257.7 256 51.2
Nn6g33757 Nelumbo nucifera HOM05D006150 ORTHO05D007745 1.1e-66 257.7 245 54.3
AT4G17050 Arabidopsis thaliana HOM05D006150 ORTHO05D007745 2.5e-66 256.5 258 50.0
CsaV3_3G004750 Cucumis sativus L. HOM05D006150 ORTHO05D007745 2.5e-66 256.5 262 49.2
TPR.G25747 Trifolium pratense HOM05D006150 ORTHO05D007745 2.5e-66 256.5 248 53.2
ATR0665G013 Amborella trichopoda HOM05D006150 ORTHO05D007745 3.3e-66 256.1 295 47.1
arahy.Tifrunner.gnm1.ann1.YY6LCE Arachis hypogaea HOM05D006150 ORTHO05D007745 3.3e-66 256.1 253 50.6
Cfa012327 Carpinus fangiana HOM05D006150 ORTHO05D007745 3.3e-66 256.1 258 50.4
Gohir.A12G212700 Gossypium hirsutum HOM05D006150 ORTHO05D007745 3.3e-66 256.1 243 52.3
Gorai.008G230800 Gossypium raimondii HOM05D006150 ORTHO05D007745 4.3e-66 255.8 243 51.9
PSO675G6476 Papaver somniferum HOM05D006150 ORTHO05D007745 4.3e-66 255.8 259 51.4
Solyc08g077840.3 Solanum lycopersicum HOM05D006150 ORTHO05D007745 4.3e-66 255.8 258 49.2
MBI04_g13858_MAGBIO Magnolia biondii HOM05D006150 ORTHO05D007745 5.6e-66 255.4 304 45.4
Sed0022790 Sechium edule HOM05D006150 ORTHO05D007745 5.6e-66 255.4 258 49.2
arahy.Tifrunner.gnm1.ann1.IPM3U6 Arachis hypogaea HOM05D006150 ORTHO05D007745 7.3e-66 255.0 256 50.0
Lj4g0002003 Lotus japonicus HOM05D006150 ORTHO05D007745 7.3e-66 255.0 258 50.4
PSO732G0039 Papaver somniferum HOM05D006150 ORTHO05D007745 7.3e-66 255.0 259 50.6
unitig_746.g26644 Utricularia gibba HOM05D006150 ORTHO05D007745 7.3e-66 255.0 259 49.4
BcaNung04656 Brassica carinata HOM05D006150 ORTHO05D007745 9.6e-66 254.6 258 48.8
TAR636G1440 Trochodendron aralioides HOM05D006150 ORTHO05D007745 9.6e-66 254.6 243 52.3
Sp7g17140 Schrenkiella parvula HOM05D006150 ORTHO05D007745 1.3e-65 254.2 243 51.9
Sopen08g026350 Solanum pennellii HOM05D006150 ORTHO05D007745 1.3e-65 254.2 258 48.8
CiPaw.11G072300 Carya illinoinensis HOM05D006150 ORTHO05D007745 2.1e-65 253.4 245 51.4
FvH4_5g20400 Fragaria vesca HOM05D006150 ORTHO05D007745 2.1e-65 253.4 266 49.6
MD04G1055500 Malus domestica HOM05D006150 ORTHO05D007745 2.1e-65 253.4 286 47.9
RcHm_v2.0_Chr7g0205681 Rosa chinensis HOM05D006150 ORTHO05D007745 2.1e-65 253.4 265 49.4
A03p50280 Brassica napus HOM05D006150 ORTHO05D007745 3.6e-65 252.7 258 48.8
BolC1t02493H Brassica oleracea HOM05D006150 ORTHO05D007745 3.6e-65 252.7 259 49.4
Gohir.D12G215200 Gossypium hirsutum HOM05D006150 ORTHO05D007745 3.6e-65 252.7 243 51.0
ClCG10G005070 Citrullus lanatus HOM05D006150 ORTHO05D007745 4.8e-65 252.3 262 48.5
BraA03t14117Z Brassica rapa HOM05D006150 ORTHO05D007745 6.2e-65 251.9 258 48.8
FAN04G1813 Fragaria x ananassa HOM05D006150 ORTHO05D007745 6.2e-65 251.9 275 48.0
PSO732G0290 Papaver somniferum HOM05D006150 ORTHO05D007745 6.2e-65 251.9 259 50.2
Manes.01G089000 Manihot esculenta HOM05D006150 ORTHO05D007745 1.4e-64 250.8 259 50.2
Rhsim07G0136400 Rhododendron simsii HOM05D006150 ORTHO05D007745 1.4e-64 250.8 258 49.6
C07p48460 Brassica napus HOM05D006150 ORTHO05D007745 1.8e-64 250.4 258 48.4
BraA01t01953Z Brassica rapa HOM05D006150 ORTHO05D007745 1.8e-64 250.4 271 48.3
Aqoxy5G02622 Aquilegia oxysepala HOM05D006150 ORTHO05D007745 3.1e-64 249.6 259 49.8
C07p48520 Brassica napus HOM05D006150 ORTHO05D007745 4.0e-64 249.2 258 48.1
BolC7t45360H Brassica oleracea HOM05D006150 ORTHO05D007745 4.0e-64 249.2 258 48.1
CSS0019555 Camellia sinensis var. sinensis HOM05D006150 ORTHO05D007745 5.3e-64 248.8 258 49.6
FAN08G0760 Fragaria x ananassa HOM05D006150 ORTHO05D007745 6.9e-64 248.4 269 48.3
BcaNung00130 Brassica carinata HOM05D006150 ORTHO05D007745 1.2e-63 247.7 259 48.6
Peaxi162Scf00301g00519 Petunia axillaris HOM05D006150 ORTHO05D007745 1.5e-63 247.3 231 51.5
MCO07G379 Micromonas commoda HOM05D006150 ORTHO05D007745 4.4e-63 245.7 312 45.2
C07p48390 Brassica napus HOM05D006150 ORTHO05D007745 9.9e-63 244.6 258 48.1
BcaC06g33538 Brassica carinata HOM05D006150 ORTHO05D007745 1.7e-62 243.8 258 47.7
AagrBONN_evm.TU.Sc2ySwM_228.2274 Anthoceros agrestis HOM05D006150 ORTHO05D007745 2.2e-62 243.4 248 49.2
Haze_08363 Corylus avellana HOM05D006150 ORTHO05D007745 1.1e-61 241.1 283 45.6
Psat4g076080 Pisum sativum HOM05D006150 ORTHO05D007745 1.3e-59 234.2 239 51.5
A01p20260 Brassica napus HOM05D006150 ORTHO05D007745 2.3e-59 233.4 260 48.1
Thhalv10026866m.g Eutrema salsugineum HOM05D006150 ORTHO05D007745 2.3e-59 233.4 270 47.0
AUR62018839 Chenopodium quinoa HOM05D006150 ORTHO05D007745 5.1e-59 232.3 200 56.0
Oeu012348.1 Olea europaea HOM05D006150 ORTHO05D007745 1.1e-58 231.1 208 54.8
Nitab4.5_0009451g0030 Nicotiana tabacum HOM05D006150 ORTHO05D007745 2.5e-58 229.9 263 46.8
vmacro00832 Vaccinium macrocarpon HOM05D006150 ORTHO05D007745 9.6e-58 228.0 297 44.4
AUR62007167 Chenopodium quinoa HOM05D006150 ORTHO05D007745 1.6e-57 227.3 200 55.0
Lsat_1_v5_gn_3_15361 Lactuca sativa HOM05D006150 ORTHO05D007745 1.6e-57 227.3 251 49.0
Aa31LG2G13130 Aethionema arabicum HOM05D006150 ORTHO05D007745 3.6e-57 226.1 248 48.4
Prupe.5G055300 Prunus persica HOM05D006150 ORTHO05D007745 3.6e-57 226.1 208 54.3
Nitab4.5_0000500g0240 Nicotiana tabacum HOM05D006150 ORTHO05D007745 6.2e-57 225.3 258 45.3
Dinv28876 Davidia involucrata HOM05D006150 ORTHO05D007745 1.8e-56 223.8 243 48.1
MCO04G282 Micromonas commoda HOM05D006150 ORTHO05D007745 3.1e-56 223.0 262 45.8
QL12p008732 Quercus lobata HOM05D006150 ORTHO05D007745 2.2e-54 216.9 399 34.8
GSVIVG01003685001 Vitis vinifera HOM05D006150 ORTHO05D007745 4.9e-54 215.7 189 56.6
SGA_v2.0_scaffold181G39680 Striga asiatica HOM05D006150 ORTHO05D007745 1.6e-52 210.7 238 49.2
Actinidia02195 Actinidia chinensis HOM05D006150 ORTHO05D007745 8.1e-49 198.4 223 47.1
BcaC09g50439 Brassica carinata HOM05D006150 ORTHO05D007745 2.0e-47 193.7 261 41.4
C01p25410 Brassica napus HOM05D006150 ORTHO05D007745 2.0e-47 193.7 261 41.4
Sc01g0007980 Simmondsia chinensis HOM05D006150 ORTHO05D007745 2.6e-47 193.4 219 47.5
CSS0048254 Camellia sinensis var. sinensis HOM05D006150 ORTHO05D007745 9.7e-34 148.3 96 71.9
Actinidia25909 Actinidia chinensis HOM05D006150 ORTHO05D007745 1.1e-32 144.8 255 35.7
MD06G1047100 Malus domestica HOM05D006150 ORTHO05D007745 4.1e-32 142.9 157 49.0
CBR_g38093 Chara braunii HOM05D006150 ORTHO05D007745 2.3e-27 127.1 67 80.6
MELO3C014174.2 Cucumis melo HOM05D006150 ORTHO05D007745 2.2e-25 120.6 91 64.8
Cpa.g.sc98.38 Carica papaya HOM05D006150 ORTHO05D007745 8.2e-25 118.6 80 62.5
Sabra01G0120600 Salix brachista HOM05D006150 ORTHO05D007745 6.5e-22 109.0 151 42.4
Potri.001G150800 Populus trichocarpa HOM05D006150 ORTHO05D007745 2.6e-15 87.0 173 32.4
Hma1.2p1_0570F.1_g180440 Hydrangea macrophylla HOM05D006150 ORTHO05D007745 3.7e-09 66.6 91 38.5
FAN18G0603 Fragaria x ananassa HOM05D006150 ORTHO05D007745 1.8e-08 64.3 103 35.0
PSO717G0125 Papaver somniferum HOM05D006150 ORTHO05D007745 5.3e-08 62.8 102 37.3
Sabra01G0120800 Salix brachista HOM05D006150 ORTHO05D007745 9.1e-08 62.0 134 30.6


User provided reference genes

Program Settings