Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre06.g289150 Chlamydomonas reinhardtii HOM05D004748 ORTHO05D005825 0.0e+00 1145.2 723 100.0
SMO228G0169 Selaginella moellendorffii HOM05D004748 ORTHO05D005825 1.2e-79 302.0 327 49.5
Pp3c20_1650 Physcomitrium patens HOM05D004748 ORTHO05D005825 4.7e-79 300.1 328 48.5
Medtr4g008150 Medicago truncatula HOM05D004748 ORTHO05D005825 3.1e-78 297.4 340 48.8
TWI12G1435 Tripterygium wilfordii HOM05D004748 ORTHO05D005825 8.9e-78 295.8 347 46.7
Ca_20497_v3 Cicer arietinum L. HOM05D004748 ORTHO05D005825 1.2e-77 295.4 356 47.5
TPR.G15725 Trifolium pratense HOM05D004748 ORTHO05D005825 1.2e-77 295.4 356 47.2
AagrBONN_evm.TU.Sc2ySwM_344.1578 Anthoceros agrestis HOM05D004748 ORTHO05D005825 2.0e-77 294.7 354 45.2
MSTRG.10889 Avicennia marina HOM05D004748 ORTHO05D005825 2.6e-77 294.3 330 47.9
MCO14G368 Micromonas commoda HOM05D004748 ORTHO05D005825 3.4e-77 293.9 332 48.2
Os04g0298200 Oryza sativa ssp. japonica HOM05D004748 ORTHO05D005825 3.4e-77 293.9 370 45.1
Migut.I01182 Erythranthe guttata HOM05D004748 ORTHO05D005825 7.5e-77 292.7 330 48.2
Mapoly0185s0006 Marchantia polymorpha HOM05D004748 ORTHO05D005825 7.5e-77 292.7 408 44.1
Peaxi162Scf00207g01631 Petunia axillaris HOM05D004748 ORTHO05D005825 7.5e-77 292.7 330 48.2
Atru.chr1.2705 Acer truncatum HOM05D004748 ORTHO05D005825 2.2e-76 291.2 330 46.4
Cfa002138 Carpinus fangiana HOM05D004748 ORTHO05D005825 2.2e-76 291.2 330 47.9
AUR62001358 Chenopodium quinoa HOM05D004748 ORTHO05D005825 8.3e-76 289.3 347 45.8
AUR62025643 Chenopodium quinoa HOM05D004748 ORTHO05D005825 8.3e-76 289.3 347 45.8
Lj3g0017034 Lotus japonicus HOM05D004748 ORTHO05D005825 8.3e-76 289.3 345 46.1
MD17G1146400 Malus domestica HOM05D004748 ORTHO05D005825 8.3e-76 289.3 346 46.8
Glyma.08G222000 Glycine max HOM05D004748 ORTHO05D005825 1.1e-75 288.9 330 47.9
THA.LOC104816897 Tarenaya hassleriana HOM05D004748 ORTHO05D005825 1.1e-75 288.9 347 46.1
Aqoxy7G02343 Aquilegia oxysepala HOM05D004748 ORTHO05D005825 1.4e-75 288.5 330 47.3
Cc04_g00320 Coffea canephora HOM05D004748 ORTHO05D005825 1.9e-75 288.1 330 47.0
COL.COLO4_31191 Corchorus olitorius HOM05D004748 ORTHO05D005825 1.9e-75 288.1 347 46.1
DCAR_022622 Daucus carota HOM05D004748 ORTHO05D005825 1.9e-75 288.1 373 44.5
RcHm_v2.0_Chr2g0149771 Rosa chinensis HOM05D004748 ORTHO05D005825 1.9e-75 288.1 356 45.8
Zm00001eb086340 Zea mays HOM05D004748 ORTHO05D005825 2.4e-75 287.7 429 42.4
EL10Ac7g18182 Beta vulgaris HOM05D004748 ORTHO05D005825 4.1e-75 287.0 347 45.2
Gohir.A06G115900 Gossypium hirsutum HOM05D004748 ORTHO05D005825 4.1e-75 287.0 347 45.5
Solyc06g063250.3 Solanum lycopersicum HOM05D004748 ORTHO05D005825 5.4e-75 286.6 330 47.0
Sopen06g022700 Solanum pennellii HOM05D004748 ORTHO05D005825 5.4e-75 286.6 330 47.0
PGSC0003DMG400026506 Solanum tuberosum HOM05D004748 ORTHO05D005825 5.4e-75 286.6 330 47.0
FAN05G0392 Fragaria x ananassa HOM05D004748 ORTHO05D005825 7.1e-75 286.2 330 47.9
FAN05G2438 Fragaria x ananassa HOM05D004748 ORTHO05D005825 7.1e-75 286.2 330 47.9
Manes.03G081362 Manihot esculenta HOM05D004748 ORTHO05D005825 7.1e-75 286.2 347 45.8
VMungo0647G1450 Vigna mungo HOM05D004748 ORTHO05D005825 7.1e-75 286.2 358 46.1
Gorai.010G141000 Gossypium raimondii HOM05D004748 ORTHO05D005825 9.2e-75 285.8 347 45.2
PGR102G1746 Punica granatum HOM05D004748 ORTHO05D005825 9.2e-75 285.8 340 46.2
FvH4_6g37160 Fragaria vesca HOM05D004748 ORTHO05D005825 1.2e-74 285.4 330 47.9
FAN14G2305 Fragaria x ananassa HOM05D004748 ORTHO05D005825 1.2e-74 285.4 330 47.9
QL05p082110 Quercus lobata HOM05D004748 ORTHO05D005825 1.2e-74 285.4 347 45.5
Ah.15g094390 Amaranthus hybridus HOM05D004748 ORTHO05D005825 1.6e-74 285.0 347 45.2
CsaV3_7G033760 Cucumis sativus L. HOM05D004748 ORTHO05D005825 1.6e-74 285.0 332 47.0
Prupe.3G019200 Prunus persica HOM05D004748 ORTHO05D005825 1.6e-74 285.0 346 45.7
Thecc.06G061000 Theobroma cacao HOM05D004748 ORTHO05D005825 1.6e-74 285.0 347 45.5
Gohir.D06G120700 Gossypium hirsutum HOM05D004748 ORTHO05D005825 2.1e-74 284.6 347 45.0
Phvul.008G254900 Phaseolus vulgaris HOM05D004748 ORTHO05D005825 2.1e-74 284.6 356 46.1
MD09G1160600 Malus domestica HOM05D004748 ORTHO05D005825 2.7e-74 284.3 346 46.0
TAR625G1093 Trochodendron aralioides HOM05D004748 ORTHO05D005825 2.7e-74 284.3 338 45.0
HPP92_026143 Vanilla planifolia HOM05D004748 ORTHO05D005825 2.7e-74 284.3 346 44.2
Potri.010G251300 Populus trichocarpa HOM05D004748 ORTHO05D005825 3.5e-74 283.9 330 47.3
AL1G59520 Arabidopsis lyrata HOM05D004748 ORTHO05D005825 4.6e-74 283.5 347 45.5
FAN09G1322 Fragaria x ananassa HOM05D004748 ORTHO05D005825 4.6e-74 283.5 330 47.9
Lalb_Chr04g0264641 Lupinus albus HOM05D004748 ORTHO05D005825 4.6e-74 283.5 347 45.5
MBI14_g10723_MAGBIO Magnolia biondii HOM05D004748 ORTHO05D005825 4.6e-74 283.5 332 46.4
ATR0580G210 Amborella trichopoda HOM05D004748 ORTHO05D005825 6.0e-74 283.1 330 46.1
MELO3C024289.2 Cucumis melo HOM05D004748 ORTHO05D005825 6.0e-74 283.1 340 46.5
Sed0019048 Sechium edule HOM05D004748 ORTHO05D005825 7.8e-74 282.7 340 45.9
CiPaw.01G089000 Carya illinoinensis HOM05D004748 ORTHO05D005825 1.0e-73 282.3 330 46.4
Sabra10G0195200 Salix brachista HOM05D004748 ORTHO05D005825 1.0e-73 282.3 330 46.4
CARHR041760 Cardamine hirsuta HOM05D004748 ORTHO05D005825 1.3e-73 282.0 347 45.5
AT1G51610 Arabidopsis thaliana HOM05D004748 ORTHO05D005825 2.3e-73 281.2 347 45.5
Carub.0001s4046 Capsella rubella HOM05D004748 ORTHO05D005825 2.3e-73 281.2 347 45.2
SHI31092 Sapria himalayana HOM05D004748 ORTHO05D005825 2.3e-73 281.2 330 46.1
CDE07G1729 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 3.0e-73 280.8 359 43.7
Aa31LG10G3160 Aethionema arabicum HOM05D004748 ORTHO05D005825 3.9e-73 280.4 348 45.4
HanXRQChr10g0311461 Helianthus annuus HOM05D004748 ORTHO05D005825 3.9e-73 280.4 330 45.8
CSS0006652 Camellia sinensis var. sinensis HOM05D004748 ORTHO05D005825 5.1e-73 280.0 347 44.1
Rhsim12G0214600 Rhododendron simsii HOM05D004748 ORTHO05D005825 5.1e-73 280.0 330 45.8
Sp1g38250 Schrenkiella parvula HOM05D004748 ORTHO05D005825 6.6e-73 279.6 376 44.1
arahy.Tifrunner.gnm1.ann1.660VQ8 Arachis hypogaea HOM05D004748 ORTHO05D005825 8.6e-73 279.3 357 44.8
BcaC08g43322 Brassica carinata HOM05D004748 ORTHO05D005825 1.1e-72 278.9 347 45.0
A06p02380 Brassica napus HOM05D004748 ORTHO05D005825 1.1e-72 278.9 347 45.0
C06p06730 Brassica napus HOM05D004748 ORTHO05D005825 1.1e-72 278.9 347 45.0
BolC6t35782H Brassica oleracea HOM05D004748 ORTHO05D005825 1.1e-72 278.9 347 45.0
BraA06t23445Z Brassica rapa HOM05D004748 ORTHO05D005825 1.1e-72 278.9 347 45.0
CDE04G0266 Ceratophyllum demersum HOM05D004748 ORTHO05D005825 1.5e-72 278.5 359 43.5
unitig_748.g7080 Utricularia gibba HOM05D006371 ORTHO05D005825 1.5e-72 278.5 332 45.8
GSVIVG01029626001 Vitis vinifera HOM05D004748 ORTHO05D005825 1.5e-72 278.5 347 44.4
Actinidia31132 Actinidia chinensis HOM05D004748 ORTHO05D005825 3.3e-72 277.3 347 44.1
CANSAT01G3164 Cannabis sativa HOM05D004748 ORTHO05D005825 3.3e-72 277.3 347 44.7
Nn8g40686 Nelumbo nucifera HOM05D004748 ORTHO05D005825 5.6e-72 276.6 340 44.7
Duzib192G0179 Durio zibethinus HOM05D004748 ORTHO05D005825 7.3e-72 276.2 338 45.9
Hma1.2p1_0517F.1_g170670 Hydrangea macrophylla HOM05D004748 ORTHO05D005825 7.3e-72 276.2 330 45.5
PSO017G2012 Papaver somniferum HOM05D004748 ORTHO05D005825 7.3e-72 276.2 353 44.5
PSO170G5564 Papaver somniferum HOM05D004748 ORTHO05D005825 7.3e-72 276.2 353 44.5
BcaB07g33612 Brassica carinata HOM05D004748 ORTHO05D005825 2.1e-71 274.6 378 43.4
CAN.G308.5 Capsicum annuum HOM05D004748 ORTHO05D005825 2.8e-71 274.2 304 48.7
Peaxi162Scf00038g02524 Petunia axillaris HOM05D004748 ORTHO05D005825 3.6e-71 273.9 304 48.4
ECA234G0898 Erigeron canadensis HOM05D004748 ORTHO05D005825 2.4e-70 271.2 324 46.0
BcaC08g43922 Brassica carinata HOM05D004748 ORTHO05D005825 3.1e-70 270.8 347 43.8
BolC6t36471H Brassica oleracea HOM05D004748 ORTHO05D005825 3.1e-70 270.8 347 43.8
BraA05t20854Z Brassica rapa HOM05D004748 ORTHO05D005825 4.0e-70 270.4 347 43.8
BcaB02g11258 Brassica carinata HOM05D004748 ORTHO05D005825 5.2e-70 270.0 347 43.5
A05p19500 Brassica napus HOM05D004748 ORTHO05D005825 5.2e-70 270.0 330 45.5
arahy.Tifrunner.gnm1.ann1.2A2X48 Arachis hypogaea HOM05D004748 ORTHO05D005825 6.8e-70 269.6 347 44.1
Eucgr.F04020 Eucalyptus grandis HOM05D004748 ORTHO05D005825 4.4e-69 266.9 387 41.9
Lsat_1_v5_gn_5_137380 Lactuca sativa HOM05D004748 ORTHO05D005825 4.4e-69 266.9 327 44.6
SGA_v2.0_scaffold71G24004 Striga asiatica HOM05D004748 ORTHO05D005825 5.8e-69 266.5 330 45.2
Hund05683 Selenicereus undatus HOM05D004748 ORTHO05D005825 8.4e-68 262.7 346 43.9
Nitab4.5_0001691g0140 Nicotiana tabacum HOM05D004748 ORTHO05D005825 1.1e-67 262.3 320 45.3
Nitab4.5_0003757g0030 Nicotiana tabacum HOM05D004748 ORTHO05D005825 1.1e-67 262.3 307 46.9
Oeu001810.2 Olea europaea HOM05D004748 ORTHO05D005825 4.1e-67 260.4 288 47.9
Lj5A24T50 Lonicera japonica HOM05D004748 ORTHO05D005825 1.0e-65 255.8 323 44.9
Psat7g261000 Pisum sativum HOM05D004748 ORTHO05D005825 3.9e-65 253.8 274 51.5
Hund18602 Selenicereus undatus HOM05D004748 ORTHO05D005825 4.7e-63 246.9 445 35.7
Ciclev10025586m.g Citrus clementina HOM05D004748 ORTHO05D005825 8.1e-63 246.1 320 43.4
ClCG09G001570 Citrullus lanatus HOM05D004748 ORTHO05D005825 3.4e-61 240.7 332 42.8
Duzib235G0633 Durio zibethinus HOM05D004748 ORTHO05D005825 9.3e-59 232.6 347 38.6
Nitab4.5_0012506g0020 Nicotiana tabacum HOM05D004748 ORTHO05D005825 9.3e-59 232.6 340 40.6
Haze_26513 Corylus avellana HOM05D004748 ORTHO05D005825 6.0e-58 229.9 327 38.2
Hma1.2p1_0517F.1_g170660 Hydrangea macrophylla HOM05D004748 ORTHO05D005825 1.6e-55 221.9 270 45.2
SEGI_05538 Sequoiadendron giganteum HOM05D004748 ORTHO05D005825 1.6e-55 221.9 266 46.2
Zm00001eb420390 Zea mays HOM05D004748 ORTHO05D005825 3.6e-55 220.7 297 44.1
Glyma.07G020100 Glycine max HOM05D004748 ORTHO05D005825 3.4e-53 214.2 248 48.4
Lj9C541G21 Lonicera japonica HOM05D004748 ORTHO05D001811 4.5e-53 213.8 406 35.0
Sc12g0011080 Simmondsia chinensis HOM05D004748 ORTHO05D005825 1.4e-51 208.8 251 46.2
Nitab4.5_0002661g0120 Nicotiana tabacum HOM05D004748 ORTHO05D005825 8.7e-49 199.5 330 37.9
Dinv20350 Davidia involucrata HOM05D004748 ORTHO05D005825 2.5e-48 198.0 241 45.2
Thhalv10011469m.g Eutrema salsugineum HOM05D004748 ORTHO05D005825 3.3e-48 197.6 249 45.8
PRCOL_00004355 Prasinoderma coloniale HOM05D004748 ORTHO05D005825 1.3e-47 195.7 381 32.5
vmacro17059 Vaccinium macrocarpon HOM05D004748 ORTHO05D005825 3.1e-38 164.5 202 45.5
C06p13150 Brassica napus HOM05D004748 ORTHO05D005825 2.5e-32 144.8 176 45.5
Haze_16292 Corylus avellana HOM05D004748 ORTHO05D005825 2.4e-30 138.3 158 46.2
Cpa.g.sc67.6 Carica papaya HOM05D004748 ORTHO05D005825 4.5e-29 134.0 172 41.9
FAN02G0724 Fragaria x ananassa HOM05D004748 ORTHO05D005825 4.6e-26 124.0 132 48.5
FAN02G4052 Fragaria x ananassa HOM05D004748 ORTHO05D005825 1.1e-24 119.4 144 47.2
Cpa.g.sc67.3 Carica papaya HOM05D004748 ORTHO05D005825 1.6e-18 99.0 112 45.5
Actinidia00641 Actinidia chinensis HOM05D004748 ORTHO05D005825 5.1e-17 94.0 121 43.0
Actinidia00640 Actinidia chinensis HOM05D004748 ORTHO05D005825 1.8e-14 85.5 99 43.4
BcaB04g17188 Brassica carinata HOM05D001232 ORTHO05D001073 7.7e-13 80.1 368 25.0
Haze_16294 Corylus avellana HOM05D004748 ORTHO05D005825 9.4e-11 73.2 78 52.6
SEGI_34839 Sequoiadendron giganteum HOM05D004748 ORTHO05D005825 1.5e-08 65.9 77 40.3
FAN05G1723 Fragaria x ananassa HOM05D000043 ORTHO05D001551 6.3e-07 60.5 74 43.2
BcaC03g16763 Brassica carinata HOM05D004748 ORTHO05D005825 1.8e-06 58.9 69 42.0
C02p46400 Brassica napus HOM05D004748 ORTHO05D005825 1.8e-06 58.9 69 42.0
BolC2t10691H Brassica oleracea HOM05D004748 ORTHO05D005825 1.8e-06 58.9 69 42.0
SEGI_05879 Sequoiadendron giganteum HOM05D004748 ORTHO05D002681 3.1e-06 58.2 103 36.9
A04p28800 Brassica napus HOM05D004748 ORTHO05D005825 7.0e-06 57.0 69 40.6
BraA08t33859Z Brassica rapa HOM05D004748 ORTHO05D005825 7.0e-06 57.0 69 40.6
BraA04t18357Z Brassica rapa HOM05D004748 ORTHO05D005825 9.1e-06 56.6 69 40.6
Haze_16297 Corylus avellana HOM05D004748 ORTHO05D005825 9.1e-06 56.6 98 35.7


User provided reference genes

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