Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre06.g284850 Chlamydomonas reinhardtii HOM05D005400 ORTHO05D006668 0.0e+00 2504.6 2363 100.0
AagrBONN_evm.TU.Sc2ySwM_362.1589 Anthoceros agrestis HOM05D005400 ORTHO05D006668 2.6e-41 176.4 905 25.5
Mapoly0089s0007 Marchantia polymorpha HOM05D005400 ORTHO05D006668 3.4e-41 176.0 688 25.9
Pp3c8_21590 Physcomitrium patens HOM05D005400 ORTHO05D006668 9.2e-39 167.9 704 26.7
PRCOL_00002573 Prasinoderma coloniale HOM05D005400 ORTHO05D006668 1.7e-32 147.1 706 25.9
CBR_g32347 Chara braunii HOM05D000019 ORTHO05D000353 4.1e-31 142.5 239 36.4
Os05g0210500 Oryza sativa ssp. japonica HOM05D005400 ORTHO05D006668 7.0e-31 141.7 240 38.8
Thecc.03G189100 Theobroma cacao HOM05D005400 ORTHO05D006668 9.2e-31 141.4 238 36.1
Gohir.D12G254600 Gossypium hirsutum HOM05D005400 ORTHO05D006668 2.7e-30 139.8 238 35.7
Aqoxy5G04046 Aquilegia oxysepala HOM05D005400 ORTHO05D006668 6.0e-30 138.7 225 38.7
Gorai.008G272300 Gossypium raimondii HOM05D005400 ORTHO05D006668 7.8e-30 138.3 238 35.7
Nn1g01753 Nelumbo nucifera HOM05D005400 ORTHO05D006668 7.8e-30 138.3 241 36.9
Eucgr.A02677 Eucalyptus grandis HOM05D005400 ORTHO05D006668 1.0e-29 137.9 239 37.7
SalBow4G2614 Salvia bowleyana HOM05D005400 ORTHO05D006668 6.6e-29 135.2 235 37.9
Zm00001eb296310 Zea mays HOM05D005400 ORTHO05D006668 8.6e-29 134.8 234 37.2
VMungo0720G2624 Vigna mungo HOM05D005400 ORTHO05D006668 1.1e-28 134.4 240 37.1
Migut.F00258 Erythranthe guttata HOM05D005400 ORTHO05D006668 1.5e-28 134.0 230 37.4
SEGI_11166 Sequoiadendron giganteum HOM05D005400 ORTHO05D006668 1.9e-28 133.7 242 34.7
MBI06_g29320_MAGBIO Magnolia biondii HOM05D005400 ORTHO05D006668 3.3e-28 132.9 235 35.7
arahy.Tifrunner.gnm1.ann1.E9FCC2 Arachis hypogaea HOM05D005400 ORTHO05D006668 5.6e-28 132.1 229 37.6
Ciclev10004177m.g Citrus clementina HOM05D005400 ORTHO05D006668 5.6e-28 132.1 240 36.7
Medtr1g099370 Medicago truncatula HOM05D005400 ORTHO05D006668 5.6e-28 132.1 238 36.1
PSO170G5128 Papaver somniferum HOM05D005400 ORTHO05D006668 5.6e-28 132.1 233 35.6
TPR.G7748 Trifolium pratense HOM05D005400 ORTHO05D006668 5.6e-28 132.1 238 36.1
Psat6g194880 Pisum sativum HOM05D005400 ORTHO05D006668 7.3e-28 131.7 238 35.7
FvH4_7g30740 Fragaria vesca HOM05D005400 ORTHO05D006668 1.2e-27 131.0 242 35.1
Hma1.2p1_0142F.1_g064180 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 1.2e-27 131.0 238 37.4
Hma1.2p1_0142F.1_g064190 Hydrangea macrophylla HOM05D005400 ORTHO05D006668 1.2e-27 131.0 238 37.4
vmacro06593 Vaccinium macrocarpon HOM05D005400 ORTHO05D006668 1.2e-27 131.0 239 35.6
CDE03G0155 Ceratophyllum demersum HOM05D005400 ORTHO05D006668 1.6e-27 130.6 241 36.5
Duzib205G0693 Durio zibethinus HOM05D005400 ORTHO05D006668 1.6e-27 130.6 683 21.7
ATR0721G161 Amborella trichopoda HOM05D005400 ORTHO05D006668 2.1e-27 130.2 650 23.5
PGR042G3191 Punica granatum HOM05D005400 ORTHO05D006668 2.8e-27 129.8 683 23.6
QL09p011755 Quercus lobata HOM05D005400 ORTHO05D006668 2.8e-27 129.8 234 36.3
Hund04816 Selenicereus undatus HOM05D005400 ORTHO05D006668 2.8e-27 129.8 234 36.8
TWI14G1289 Tripterygium wilfordii HOM05D005400 ORTHO05D006668 2.8e-27 129.8 241 35.7
Actinidia34175 Actinidia chinensis HOM05D005400 ORTHO05D006668 3.6e-27 129.4 236 35.6
Lj5g0007861 Lotus japonicus HOM05D005400 ORTHO05D006668 3.6e-27 129.4 240 35.4
CANSAT21G0517 Cannabis sativa HOM05D005400 ORTHO05D006668 4.7e-27 129.0 683 22.5
GSVIVG01028757001 Vitis vinifera HOM05D005400 ORTHO05D006668 4.7e-27 129.0 241 34.9
Manes.06G155000 Manihot esculenta HOM05D005400 ORTHO05D006668 6.2e-27 128.6 238 36.1
MSTRG.27059 Avicennia marina HOM05D005400 ORTHO05D006668 1.4e-26 127.5 234 35.5
COL.COLO4_30250 Corchorus olitorius HOM05D005400 ORTHO05D006668 1.4e-26 127.5 238 34.5
Glyma.10G227900 Glycine max HOM05D005400 ORTHO05D006668 1.4e-26 127.5 226 36.7
EL10Ac3g05372 Beta vulgaris HOM05D005400 ORTHO05D006668 3.1e-26 126.3 228 36.0
Cfa016337 Carpinus fangiana HOM05D005400 ORTHO05D006668 3.1e-26 126.3 240 35.4
Phvul.007G077600 Phaseolus vulgaris HOM05D005400 ORTHO05D006668 3.1e-26 126.3 226 35.8
Sc13g0009410 Simmondsia chinensis HOM05D005400 ORTHO05D006668 3.1e-26 126.3 237 36.3
Atru.chr1.311 Acer truncatum HOM05D005400 ORTHO05D006668 4.0e-26 125.9 234 34.6
Oeu037127.2 Olea europaea HOM05D005400 ORTHO05D006668 4.0e-26 125.9 236 34.3
RcHm_v2.0_Chr1g0379691 Rosa chinensis HOM05D005400 ORTHO05D006668 5.2e-26 125.6 239 34.3
Glyma.20G164400 Glycine max HOM05D005400 ORTHO05D006668 6.8e-26 125.2 240 35.4
AUR62031458 Chenopodium quinoa HOM05D005400 ORTHO05D006668 8.9e-26 124.8 226 38.5
arahy.Tifrunner.gnm1.ann1.B3EP0P Arachis hypogaea HOM05D005400 ORTHO05D006668 1.5e-25 124.0 244 35.2
CiPaw.05G259500 Carya illinoinensis HOM05D005400 ORTHO05D006668 2.0e-25 123.6 234 35.9
Cpa.g.sc3.16 Carica papaya HOM05D005400 ORTHO05D006668 2.6e-25 123.2 233 35.2
Sed0025455 Sechium edule HOM05D005400 ORTHO05D006668 2.6e-25 123.2 229 36.2
AUR62021073 Chenopodium quinoa HOM05D005400 ORTHO05D006668 3.4e-25 122.9 226 37.6
Atru.BG.163.p Acer truncatum HOM05D005400 ORTHO05D006668 4.4e-25 122.5 226 34.5
THA.LOC104811936 Tarenaya hassleriana HOM05D005400 ORTHO05D006668 5.8e-25 122.1 241 34.9
HPP92_007648 Vanilla planifolia HOM05D005400 ORTHO05D006668 7.5e-25 121.7 228 33.8
Aa31LG3G9160 Aethionema arabicum HOM05D005400 ORTHO05D006668 9.8e-25 121.3 218 36.7
Sabra15G0021300 Salix brachista HOM05D005400 ORTHO05D006668 9.8e-25 121.3 235 33.6
Cc02_g02120 Coffea canephora HOM05D005400 ORTHO05D006668 1.3e-24 120.9 237 34.6
FAN03G3290 Fragaria x ananassa HOM05D005400 ORTHO05D006668 1.3e-24 120.9 242 34.3
FAN06G4050 Fragaria x ananassa HOM05D005400 ORTHO05D006668 1.7e-24 120.6 242 34.3
MD01G1212700 Malus domestica HOM05D005400 ORTHO05D006668 2.2e-24 120.2 240 35.8
TAR374G0725 Trochodendron aralioides HOM05D005400 ORTHO05D006668 2.9e-24 119.8 240 34.6
CsaV3_5G000860 Cucumis sativus L. HOM05D005400 ORTHO05D006668 3.7e-24 119.4 229 34.9
ClCG01G000730 Citrullus lanatus HOM05D005400 ORTHO05D006668 4.9e-24 119.0 229 34.9
Sabra15G0018800 Salix brachista HOM05D005400 ORTHO05D006668 4.9e-24 119.0 235 33.2
SGA_v2.0_scaffold44G16767 Striga asiatica HOM05D005400 ORTHO05D006668 4.9e-24 119.0 235 34.0
MELO3C005855.2 Cucumis melo HOM05D005400 ORTHO05D006668 6.4e-24 118.6 229 34.9
FAN06G5036 Fragaria x ananassa HOM05D005400 ORTHO05D006668 6.4e-24 118.6 242 33.9
ECA246G1245 Erigeron canadensis HOM05D005400 ORTHO05D006668 1.1e-23 117.9 236 33.9
Thhalv10012488m.g Eutrema salsugineum HOM05D005400 ORTHO05D006668 1.4e-23 117.5 227 36.1
Potri.015G024300 Populus trichocarpa HOM05D005400 ORTHO05D006668 1.4e-23 117.5 234 33.3
AT5G52910 Arabidopsis thaliana HOM05D005400 ORTHO05D006668 1.9e-23 117.1 227 35.7
Peaxi162Scf00904g00467 Petunia axillaris HOM05D005400 ORTHO05D006668 1.9e-23 117.1 236 33.9
CAN.G108.2 Capsicum annuum HOM05D005400 ORTHO05D006668 2.4e-23 116.7 237 34.2
HanXRQChr05g0158761 Helianthus annuus HOM05D005400 ORTHO05D006668 4.1e-23 115.9 237 34.6
Lsat_1_v5_gn_5_37621 Lactuca sativa HOM05D005400 ORTHO05D006668 4.1e-23 115.9 236 33.1
Lalb_Chr06g0161421 Lupinus albus HOM05D005400 ORTHO05D006668 4.1e-23 115.9 673 22.9
Solyc03g007800.3 Solanum lycopersicum HOM05D005400 ORTHO05D006668 5.4e-23 115.5 238 34.0
Sp6g15090 Schrenkiella parvula HOM05D005400 ORTHO05D006668 7.0e-23 115.2 225 36.0
Rhsim03G0196700 Rhododendron simsii HOM05D005400 ORTHO05D006668 9.2e-23 114.8 214 34.6
Sopen03g003730 Solanum pennellii HOM05D005400 ORTHO05D006668 9.2e-23 114.8 238 34.0
PGSC0003DMG400006589 Solanum tuberosum HOM05D005400 ORTHO05D006668 9.2e-23 114.8 238 33.6
AL8G27410 Arabidopsis lyrata HOM05D005400 ORTHO05D006668 1.6e-22 114.0 227 35.7
Carub.0008s1311 Capsella rubella HOM05D005400 ORTHO05D006668 2.1e-22 113.6 227 35.7
CARHR265900 Cardamine hirsuta HOM05D005400 ORTHO05D006668 2.1e-22 113.6 225 35.6
BraA10t43124Z Brassica rapa HOM05D005400 ORTHO05D006668 2.7e-22 113.2 229 35.8
FAN01G1802 Fragaria x ananassa HOM05D005400 ORTHO05D006668 3.5e-22 112.8 240 33.8
SMO353G0144 Selaginella moellendorffii HOM05D005400 ORTHO05D006668 3.5e-22 112.8 244 29.5
A10p10420 Brassica napus HOM05D005400 ORTHO05D006668 6.0e-22 112.1 226 35.8
BcaB08g35655 Brassica carinata HOM05D005400 ORTHO05D006668 1.0e-21 111.3 226 35.8
BcaC04g20520 Brassica carinata HOM05D005400 ORTHO05D006668 6.6e-21 108.6 227 36.1
C09p42650 Brassica napus HOM05D005400 ORTHO05D006668 6.6e-21 108.6 227 36.1
BolC9t57141H Brassica oleracea HOM05D005400 ORTHO05D006668 6.6e-21 108.6 227 36.1
DCAR_020293 Daucus carota HOM05D005400 ORTHO05D006668 1.1e-20 107.8 222 34.2
FAN10G3192 Fragaria x ananassa HOM05D005400 ORTHO05D006668 1.5e-17 97.4 246 32.5
CSS0023888 Camellia sinensis var. sinensis HOM05D005400 ORTHO05D006668 2.6e-17 96.7 237 32.5
unitig_46.g18810 Utricularia gibba HOM05D005400 ORTHO05D006668 1.7e-16 94.0 205 32.7
Haze_00088 Corylus avellana HOM05D005400 ORTHO05D006668 2.2e-16 93.6 240 32.5
Dinv35292 Davidia involucrata HOM05D005400 ORTHO05D006668 1.1e-15 91.3 134 35.1
Nitab4.5_0001748g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 5.4e-15 89.0 202 31.2
Nitab4.5_0002340g0020 Nicotiana tabacum HOM05D005400 ORTHO05D006668 6.0e-14 85.5 194 31.4
CDE04G2330 Ceratophyllum demersum HOM05D005400 ORTHO05D006668 8.1e-11 75.1 98 38.8
arahy.Tifrunner.gnm1.ann1.3F6PU2 Arachis hypogaea HOM05D005400 ORTHO05D006668 1.3e-08 67.8 92 34.8
Ah.07g206200 Amaranthus hybridus HOM05D005400 ORTHO05D006668 1.7e-08 67.4 147 33.3
Lj3C915T0 Lonicera japonica HOM05D005400 ORTHO05D006668 1.7e-08 67.4 102 38.2
SMO171G0132 Selaginella moellendorffii HOM05D005400 ORTHO05D006668 2.2e-08 67.0 89 37.1
arahy.Tifrunner.gnm1.ann1.FE5R37 Arachis hypogaea HOM05D005400 ORTHO05D006668 1.4e-07 64.3 107 33.6
SHI13742 Sapria himalayana HOM05D005400 ORTHO05D006668 2.4e-07 63.5 164 30.5
Ca_10700_v3 Cicer arietinum L. HOM05D005400 ORTHO05D006668 9.2e-07 61.6 134 30.6
Gohir.A12G254700 Gossypium hirsutum HOM05D005400 ORTHO05D006668 9.2e-07 61.6 145 32.4


User provided reference genes

Program Settings