Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre06.g283300 Chlamydomonas reinhardtii HOM05D005036 ORTHO05D005881 1.5e-91 339.7 196 100.0
AagrBONN_evm.TU.Sc2ySwM_368.2717 Anthoceros agrestis HOM05D005036 ORTHO05D005881 2.2e-15 86.7 125 40.0
MSTRG.10334 Avicennia marina HOM05D005036 ORTHO05D005881 8.5e-15 84.7 130 43.1
Peaxi162Scf01128g00018 Petunia axillaris HOM05D005036 ORTHO05D005881 1.4e-14 84.0 181 44.2
C03p43440 Brassica napus HOM05D005036 ORTHO05D005881 3.2e-14 82.8 179 32.4
MCO14G431 Micromonas commoda HOM05D005036 ORTHO05D005881 4.2e-14 82.4 80 52.5
BcaC01g04252 Brassica carinata HOM05D005036 ORTHO05D005881 1.2e-13 80.9 179 31.8
BolC3t16615H Brassica oleracea HOM05D005036 ORTHO05D005881 1.2e-13 80.9 179 31.8
A03p35790 Brassica napus HOM05D005036 ORTHO05D005881 4.6e-13 79.0 179 31.8
BraA03t12751Z Brassica rapa HOM05D005036 ORTHO05D005881 4.6e-13 79.0 179 31.8
HPP92_008393 Vanilla planifolia HOM05D005036 ORTHO05D005881 2.3e-12 76.6 166 46.4
Aqoxy1G01100 Aquilegia oxysepala HOM05D005036 ORTHO05D005881 6.3e-10 68.6 151 43.7
Nitab4.5_0003268g0010 Nicotiana tabacum HOM05D005036 ORTHO05D005881 6.3e-10 68.6 67 49.3
BcaC05g29716 Brassica carinata HOM05D005036 ORTHO05D005881 2.4e-09 66.6 149 30.9
DCAR_015009 Daucus carota HOM05D005036 ORTHO05D005881 2.4e-09 66.6 119 33.6
DCAR_032184 Daucus carota HOM05D005036 ORTHO05D005881 2.4e-09 66.6 119 33.6
BcaC05g29712 Brassica carinata HOM05D005036 ORTHO05D005881 4.1e-09 65.9 107 37.4
BcaC05g29713 Brassica carinata HOM05D005036 ORTHO05D005881 4.1e-09 65.9 107 37.4
Os03g0145800 Oryza sativa ssp. japonica HOM05D005036 ORTHO05D005881 4.1e-09 65.9 129 45.0
SGA_v2.0_scaffold224G42932 Striga asiatica HOM05D005036 ORTHO05D005881 1.2e-08 64.3 168 42.9
BcaC05g29714 Brassica carinata HOM05D005036 ORTHO05D005881 1.5e-08 63.9 103 35.0
BcaC05g29715 Brassica carinata HOM05D005036 ORTHO05D005881 1.5e-08 63.9 103 35.0
CBR_g9117 Chara braunii HOM05D005036 ORTHO05D005881 1.0e-07 61.2 69 43.5
Migut.J00453 Erythranthe guttata HOM05D005036 ORTHO05D005881 1.7e-07 60.5 148 42.6
Pp3c10_11210 Physcomitrium patens HOM05D005036 ORTHO05D005881 1.7e-07 60.5 167 40.7
SMO348G0065 Selaginella moellendorffii HOM05D000088 ORTHO05D002723 1.7e-07 60.5 91 38.5
SEGI_41481 Sequoiadendron giganteum HOM05D004225 ORTHO05D004728 2.2e-07 60.1 99 38.4
CsaV3_3G036210 Cucumis sativus L. HOM05D005036 ORTHO05D005881 3.8e-07 59.3 165 41.8
MELO3C009379.2 Cucumis melo HOM05D005036 ORTHO05D005881 5.0e-07 58.9 165 41.8
Migut.L01721 Erythranthe guttata HOM05D005036 ORTHO05D005881 8.5e-07 58.2 58 50.0
unitig_578.g16379 Utricularia gibba HOM05D000468 ORTHO05D005881 8.5e-07 58.2 109 35.8
MBI15_g24508_MAGBIO Magnolia biondii HOM05D005036 ORTHO05D005881 1.1e-06 57.8 52 55.8
AagrBONN_evm.TU.Sc2ySwM_228.1834 Anthoceros agrestis HOM05D004225 ORTHO05D004728 1.4e-06 57.4 91 39.6
DCAR_020662 Daucus carota HOM05D004225 ORTHO05D004728 1.4e-06 57.4 99 39.4
CAN.G488.30 Capsicum annuum HOM05D005036 ORTHO05D005881 1.9e-06 57.0 93 39.8
Oeu056532.1 Olea europaea HOM05D005036 ORTHO05D005881 1.9e-06 57.0 169 40.8
Phvul.007G218000 Phaseolus vulgaris HOM05D007663 ORTHO05D009455 1.9e-06 57.0 100 31.0
Thecc.01G126100 Theobroma cacao HOM05D000097 ORTHO05D000041 1.9e-06 57.0 89 40.4
CBR_g16035 Chara braunii HOM05D003550 ORTHO05D004336 2.5e-06 56.6 100 36.0
FvH4_6g16830 Fragaria vesca HOM05D005036 ORTHO05D005881 2.5e-06 56.6 77 42.9
FAN02G0694 Fragaria x ananassa HOM05D000001 ORTHO05D000003 2.5e-06 56.6 77 42.9
FAN05G3428 Fragaria x ananassa HOM05D005036 ORTHO05D005881 2.5e-06 56.6 77 42.9
FAN09G0503 Fragaria x ananassa HOM05D005036 ORTHO05D000003 2.5e-06 56.6 77 42.9
FAN14G1811 Fragaria x ananassa HOM05D000001 ORTHO05D000003 2.5e-06 56.6 77 42.9
PSO063G6940 Papaver somniferum HOM05D001854 ORTHO05D001800 2.5e-06 56.6 74 43.2
FAN05G0966 Fragaria x ananassa HOM05D005036 ORTHO05D005881 3.2e-06 56.2 77 42.9
PSO063G2941 Papaver somniferum HOM05D005036 ORTHO05D005881 3.2e-06 56.2 84 42.9
RcHm_v2.0_Chr3g0470841 Rosa chinensis HOM05D005036 ORTHO05D005881 3.2e-06 56.2 77 42.9
Oeu016995.1 Olea europaea HOM05D005036 ORTHO05D005881 4.2e-06 55.8 83 43.4
Solyc09g008450.3 Solanum lycopersicum HOM05D005036 ORTHO05D005881 4.2e-06 55.8 79 41.8
AagrBONN_evm.TU.Sc2ySwM_117.3093 Anthoceros agrestis HOM05D000413 ORTHO05D000292 5.5e-06 55.5 88 39.8
Eucgr.A01621 Eucalyptus grandis HOM05D005036 ORTHO05D005881 5.5e-06 55.5 73 45.2
Peaxi162Scf00110g00120 Petunia axillaris HOM05D005036 ORTHO05D005881 5.5e-06 55.5 87 41.4
Sopen09g003280 Solanum pennellii HOM05D005036 ORTHO05D005881 5.5e-06 55.5 79 41.8
PGSC0003DMG400003873 Solanum tuberosum HOM05D005036 ORTHO05D005881 5.5e-06 55.5 79 41.8
CANSAT21G1772 Cannabis sativa HOM05D001854 ORTHO05D001800 7.2e-06 55.1 102 33.3
AUR62026956 Chenopodium quinoa HOM05D005036 ORTHO05D005881 7.2e-06 55.1 68 44.1
Eucgr.A02119 Eucalyptus grandis HOM05D004225 ORTHO05D004728 7.2e-06 55.1 98 36.7
HanXRQChr10g0284081 Helianthus annuus HOM05D001854 ORTHO05D001800 7.2e-06 55.1 74 44.6
Actinidia31315 Actinidia chinensis HOM05D005036 ORTHO05D005881 9.4e-06 54.7 148 41.2
CARHR084400 Cardamine hirsuta HOM05D005036 ORTHO05D005881 9.4e-06 54.7 76 35.5
PGSC0003DMG400028280 Solanum tuberosum HOM05D005036 ORTHO05D005881 9.4e-06 54.7 94 38.3


User provided reference genes

Program Settings