Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre06.g282950 Chlamydomonas reinhardtii HOM05D004699 ORTHO05D005668 2.9e-180 635.2 336 100.0
Mapoly0019s0063 Marchantia polymorpha HOM05D004699 ORTHO05D005668 1.5e-32 144.4 330 33.0
Pp3c11_21230 Physcomitrium patens HOM05D004699 ORTHO05D005668 6.1e-29 132.5 329 30.4
SMO116G0436 Selaginella moellendorffii HOM05D004699 ORTHO05D005668 1.5e-27 127.9 331 30.5
ATR0661G308 Amborella trichopoda HOM05D004699 ORTHO05D005668 2.8e-26 123.6 326 29.4
Aqoxy2G00791 Aquilegia oxysepala HOM05D004699 ORTHO05D005668 4.8e-26 122.9 327 28.4
Pp3c7_7450 Physcomitrium patens HOM05D004699 ORTHO05D005668 4.8e-26 122.9 336 29.2
QL08p056836 Quercus lobata HOM05D004699 ORTHO05D005668 1.8e-25 120.9 327 29.4
Nn2g10994 Nelumbo nucifera HOM05D004699 ORTHO05D005668 4.5e-24 116.3 329 28.3
AagrBONN_evm.TU.Sc2ySwM_344.3470 Anthoceros agrestis HOM05D004699 ORTHO05D005668 5.9e-24 115.9 203 37.9
MD07G1179200 Malus domestica HOM05D004699 ORTHO05D005668 5.9e-24 115.9 327 29.1
CiPaw.15G145000 Carya illinoinensis HOM05D004699 ORTHO05D005668 7.7e-24 115.5 325 27.7
TWI63G1195 Tripterygium wilfordii HOM05D004699 ORTHO05D005668 7.7e-24 115.5 326 28.2
HanXRQChr07g0195941 Helianthus annuus HOM05D004699 ORTHO05D005668 1.0e-23 115.2 326 30.1
ClCG06G002910 Citrullus lanatus HOM05D004699 ORTHO05D005668 1.3e-23 114.8 327 28.4
HanXRQChr14g0453411 Helianthus annuus HOM05D004699 ORTHO05D005668 1.3e-23 114.8 326 28.8
CsaV3_6G009040 Cucumis sativus L. HOM05D004699 ORTHO05D005668 3.8e-23 113.2 329 28.0
Gohir.A13G021600 Gossypium hirsutum HOM05D004699 ORTHO05D005668 5.0e-23 112.8 334 27.2
CANSAT56G2462 Cannabis sativa HOM05D004699 ORTHO05D005668 1.1e-22 111.7 327 27.5
Cpa.g.sc53.21 Carica papaya HOM05D004699 ORTHO05D005668 1.1e-22 111.7 329 27.1
Ca_10595_v3 Cicer arietinum L. HOM05D004699 ORTHO05D005668 1.4e-22 111.3 335 28.1
Gorai.013G025000 Gossypium raimondii HOM05D004699 ORTHO05D005668 1.9e-22 110.9 336 26.8
MD01G1131100 Malus domestica HOM05D004699 ORTHO05D005668 2.5e-22 110.5 327 28.7
Medtr1g095910 Medicago truncatula HOM05D004699 ORTHO05D005668 2.5e-22 110.5 325 28.0
MSTRG.6667 Avicennia marina HOM05D004699 ORTHO05D005668 3.2e-22 110.2 331 27.8
PSO349G0185 Papaver somniferum HOM05D004699 ORTHO05D005668 3.2e-22 110.2 329 27.7
TAR633G1364 Trochodendron aralioides HOM05D004699 ORTHO05D005668 3.2e-22 110.2 327 26.9
DCAR_006464 Daucus carota HOM05D004699 ORTHO05D005668 4.2e-22 109.8 327 28.7
ECA247G2135 Erigeron canadensis HOM05D004699 ORTHO05D005668 4.2e-22 109.8 326 28.2
MELO3C022239.2 Cucumis melo HOM05D004699 ORTHO05D005668 5.5e-22 109.4 329 27.7
Dinv11807 Davidia involucrata HOM05D004699 ORTHO05D005668 5.5e-22 109.4 330 28.2
PSO765G0019 Papaver somniferum HOM05D004699 ORTHO05D005668 7.2e-22 109.0 329 27.7
Sed0011372 Sechium edule HOM05D004699 ORTHO05D005668 7.2e-22 109.0 327 27.8
Gohir.D13G022200 Gossypium hirsutum HOM05D004699 ORTHO05D005668 9.4e-22 108.6 334 26.6
PGR142G2805 Punica granatum HOM05D004699 ORTHO05D005668 9.4e-22 108.6 327 27.8
RcHm_v2.0_Chr1g0364111 Rosa chinensis HOM05D004699 ORTHO05D005668 2.7e-21 107.1 326 28.2
Duzib114G0670 Durio zibethinus HOM05D004699 ORTHO05D005668 6.1e-21 105.9 332 27.4
Prupe.2G218300 Prunus persica HOM05D004699 ORTHO05D005668 6.1e-21 105.9 327 27.5
Haze_18894 Corylus avellana HOM05D004699 ORTHO05D005668 7.9e-21 105.5 334 27.2
SalBow8G2974 Salvia bowleyana HOM05D004699 ORTHO05D005668 7.9e-21 105.5 331 28.4
Cc03_g16280 Coffea canephora HOM05D004699 ORTHO05D005668 1.0e-20 105.1 330 28.2
Thecc.10G067900 Theobroma cacao HOM05D004699 ORTHO05D005668 1.0e-20 105.1 329 26.4
arahy.Tifrunner.gnm1.ann1.3U687E Arachis hypogaea HOM05D004699 ORTHO05D005668 1.4e-20 104.8 332 26.5
Lj5g0001210 Lotus japonicus HOM05D004699 ORTHO05D005668 1.4e-20 104.8 327 26.6
Lalb_Chr01g0010171 Lupinus albus HOM05D004699 ORTHO05D005668 1.8e-20 104.4 332 27.7
arahy.Tifrunner.gnm1.ann1.TH86UG Arachis hypogaea HOM05D004699 ORTHO05D005668 2.3e-20 104.0 332 26.5
PGSC0003DMG400002241 Solanum tuberosum HOM05D004699 ORTHO05D005668 2.3e-20 104.0 330 28.8
CSS0050516 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 3.9e-20 103.2 330 27.3
Migut.M00004 Erythranthe guttata HOM05D004699 ORTHO05D005668 5.1e-20 102.8 332 28.3
arahy.Tifrunner.gnm1.ann1.32M4WS Arachis hypogaea HOM05D004699 ORTHO05D005668 8.8e-20 102.1 334 26.6
CDE04G1653 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 8.8e-20 102.1 324 26.5
Nitab4.5_0000219g0050 Nicotiana tabacum HOM05D004699 ORTHO05D005668 1.1e-19 101.7 328 28.7
Sc09g0006780 Simmondsia chinensis HOM05D004699 ORTHO05D005668 1.1e-19 101.7 329 27.1
Nitab4.5_0005353g0020 Nicotiana tabacum HOM05D004699 ORTHO05D005668 1.5e-19 101.3 328 28.7
Psat6g186040 Pisum sativum HOM05D004699 ORTHO05D005668 1.5e-19 101.3 326 27.6
VMungo0720G0718 Vigna mungo HOM05D004699 ORTHO05D005668 1.5e-19 101.3 332 27.1
Phvul.007G091600 Phaseolus vulgaris HOM05D004699 ORTHO05D005668 2.0e-19 100.9 328 26.8
CSS0042102 Camellia sinensis var. sinensis HOM05D004699 ORTHO05D005668 2.6e-19 100.5 328 26.8
CAN.G8.39 Capsicum annuum HOM05D004699 ORTHO05D005668 2.6e-19 100.5 335 27.8
AUR62043639 Chenopodium quinoa HOM05D004699 ORTHO05D005668 3.3e-19 100.1 330 27.6
Manes.07G102100 Manihot esculenta HOM05D004699 ORTHO05D005668 3.3e-19 100.1 334 26.6
CARHR277070 Cardamine hirsuta HOM05D004699 ORTHO05D005668 4.4e-19 99.8 333 25.8
Potri.010G217400 Populus trichocarpa HOM05D004699 ORTHO05D005668 4.4e-19 99.8 328 27.1
Solyc12g017820.2 Solanum lycopersicum HOM05D004699 ORTHO05D005668 4.4e-19 99.8 330 28.2
TAR636G2780 Trochodendron aralioides HOM05D004699 ORTHO05D005668 4.4e-19 99.8 221 31.7
FvH4_7g20140 Fragaria vesca HOM05D004699 ORTHO05D005668 5.7e-19 99.4 326 27.0
FAN06G0847 Fragaria x ananassa HOM05D004699 ORTHO05D005668 5.7e-19 99.4 326 27.0
Glyma.20G177500 Glycine max HOM05D004699 ORTHO05D005668 5.7e-19 99.4 325 26.2
Actinidia03029 Actinidia chinensis HOM05D004699 ORTHO05D005668 7.4e-19 99.0 327 26.9
C09p09240 Brassica napus HOM05D004699 ORTHO05D005668 1.3e-18 98.2 327 26.6
BolC9t53837H Brassica oleracea HOM05D004699 ORTHO05D005668 1.3e-18 98.2 327 26.6
FAN10G1203 Fragaria x ananassa HOM05D004699 ORTHO05D005668 1.7e-18 97.8 326 27.0
BraA09t36470Z Brassica rapa HOM05D004699 ORTHO05D005668 2.2e-18 97.4 327 26.3
Cfa019630 Carpinus fangiana HOM05D004699 ORTHO05D005668 2.2e-18 97.4 260 28.5
Potri.008G044100 Populus trichocarpa HOM05D004699 ORTHO05D005668 2.2e-18 97.4 325 26.2
AUR62020788 Chenopodium quinoa HOM05D004699 ORTHO05D005668 2.8e-18 97.1 333 27.0
Ah.10g033030 Amaranthus hybridus HOM05D004699 ORTHO05D005668 4.8e-18 96.3 328 25.0
Gohir.A05G344400 Gossypium hirsutum HOM05D004699 ORTHO05D005668 4.8e-18 96.3 332 25.0
Sopen08g006240 Solanum pennellii HOM05D004699 ORTHO05D005668 4.8e-18 96.3 330 27.0
AL8G40300 Arabidopsis lyrata HOM05D004699 ORTHO05D005668 6.3e-18 95.9 333 25.8
Sabra10G0168100 Salix brachista HOM05D004699 ORTHO05D005668 6.3e-18 95.9 326 26.4
Solyc08g015990.4 Solanum lycopersicum HOM05D004699 ORTHO05D005668 6.3e-18 95.9 330 26.7
Nitab4.5_0000348g0090 Nicotiana tabacum HOM05D004699 ORTHO05D005668 8.2e-18 95.5 330 28.2
AT5G63220 Arabidopsis thaliana HOM05D004699 ORTHO05D005668 1.1e-17 95.1 333 25.5
Gorai.012G093600 Gossypium raimondii HOM05D004699 ORTHO05D005668 1.1e-17 95.1 332 25.0
Lsat_1_v5_gn_2_110160 Lactuca sativa HOM05D004699 ORTHO05D005668 1.1e-17 95.1 240 30.8
A09p08190 Brassica napus HOM05D004699 ORTHO05D005668 1.4e-17 94.7 328 26.5
Carub.0008s2397 Capsella rubella HOM05D004699 ORTHO05D005668 1.4e-17 94.7 332 25.3
Glyma.10G214100 Glycine max HOM05D004699 ORTHO05D005668 1.4e-17 94.7 327 26.0
PGSC0003DMG400007657 Solanum tuberosum HOM05D004699 ORTHO05D005668 1.4e-17 94.7 330 26.7
Eucgr.G02801 Eucalyptus grandis HOM05D004699 ORTHO05D005668 1.8e-17 94.4 331 26.3
BcaC01g02566 Brassica carinata HOM05D004699 ORTHO05D005668 2.4e-17 94.0 333 25.2
Atru.chr12.635 Acer truncatum HOM05D004699 ORTHO05D005668 3.1e-17 93.6 330 26.4
A06p29940 Brassica napus HOM05D004699 ORTHO05D005668 3.1e-17 93.6 331 25.7
TPR.G1830 Trifolium pratense HOM05D004699 ORTHO05D005668 3.1e-17 93.6 211 31.8
BolC3t18594H Brassica oleracea HOM05D004699 ORTHO05D005668 4.1e-17 93.2 331 25.4
Zm00001eb123410 Zea mays HOM05D004699 ORTHO05D005668 4.1e-17 93.2 225 30.2
CAN.G50.13 Capsicum annuum HOM05D004699 ORTHO05D005668 5.3e-17 92.8 330 26.7
THA.LOC104799349 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 5.3e-17 92.8 324 25.0
Sopen12g008620 Solanum pennellii HOM05D004699 ORTHO05D005668 7.0e-17 92.4 335 28.1
Thhalv10004594m.g Eutrema salsugineum HOM05D004699 ORTHO05D005668 9.1e-17 92.0 333 24.9
Actinidia38250 Actinidia chinensis HOM05D004699 ORTHO05D005668 1.5e-16 91.3 325 26.5
THA.LOC104827325 Tarenaya hassleriana HOM05D004699 ORTHO05D005668 1.5e-16 91.3 328 25.0
HPP92_021827 Vanilla planifolia HOM05D004699 ORTHO05D005668 1.5e-16 91.3 325 28.3
Lalb_Chr21g0305871 Lupinus albus HOM05D004699 ORTHO05D005668 2.6e-16 90.5 327 24.8
Ciclev10032131m.g Citrus clementina HOM05D004699 ORTHO05D005668 4.5e-16 89.7 327 23.5
Nitab4.5_0001070g0040 Nicotiana tabacum HOM05D004699 ORTHO05D005668 4.5e-16 89.7 330 26.1
Oeu061895.3 Olea europaea HOM05D004699 ORTHO05D005668 1.3e-15 88.2 331 26.6
arahy.Tifrunner.gnm1.ann1.UD3ZER Arachis hypogaea HOM05D004699 ORTHO05D005668 3.8e-15 86.7 312 26.6
CDE07G0668 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 3.8e-15 86.7 215 30.7
Peaxi162Scf00057g00154 Petunia axillaris HOM05D004699 ORTHO05D005668 1.1e-14 85.1 330 27.3
Gohir.D04G082900 Gossypium hirsutum HOM05D004699 ORTHO05D005668 7.2e-14 82.4 216 26.4
CBR_g49532 Chara braunii HOM05D004699 ORTHO05D005668 1.2e-13 81.6 310 24.8
C03p63420 Brassica napus HOM05D004699 ORTHO05D005668 1.8e-12 77.8 329 23.4
BraA06t25945Z Brassica rapa HOM05D004699 ORTHO05D005668 1.8e-12 77.8 304 24.3
CDE07G1914 Ceratophyllum demersum HOM05D004699 ORTHO05D005668 1.8e-12 77.8 307 24.4
Sabra08G0030500 Salix brachista HOM05D004699 ORTHO05D005668 1.8e-12 77.8 374 24.9
Duzib106G1564 Durio zibethinus HOM05D004699 ORTHO05D005668 3.0e-12 77.0 329 25.5
arahy.Tifrunner.gnm1.ann1.I3EVQT Arachis hypogaea HOM05D004699 ORTHO05D005668 7.4e-11 72.4 244 27.0
Rhsim03G0122800 Rhododendron simsii HOM05D004699 ORTHO05D005668 7.4e-11 72.4 189 29.6
GSVIVG01016338001 Vitis vinifera HOM05D004699 ORTHO05D005668 9.7e-11 72.0 159 32.1
FAN01G1284 Fragaria x ananassa HOM05D004699 ORTHO05D005668 2.2e-10 70.9 161 31.1
SGA_v2.0_scaffold277G46671 Striga asiatica HOM05D004699 ORTHO05D000105 8.2e-10 68.9 83 42.2
Hund19333 Selenicereus undatus HOM05D004699 ORTHO05D005668 1.1e-09 68.6 379 21.6
RcHm_v2.0_Chr5g0038701 Rosa chinensis HOM05D004699 ORTHO05D005668 1.4e-09 68.2 110 40.9
Dinv04679 Davidia involucrata HOM05D004699 ORTHO05D005668 1.8e-09 67.8 82 40.2
RcHm_v2.0_Chr2g0153331 Rosa chinensis HOM05D004699 ORTHO05D005668 2.4e-09 67.4 103 43.7
vmacro07089 Vaccinium macrocarpon HOM05D004699 ORTHO05D005668 1.2e-08 65.1 89 39.3
FAN03G0794 Fragaria x ananassa HOM05D004699 ORTHO05D005668 2.6e-08 63.9 324 24.4
Os01g0164700 Oryza sativa ssp. japonica HOM05D004699 ORTHO05D005668 3.2e-06 57.0 55 52.7


User provided reference genes

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