Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre06.g281750 Chlamydomonas reinhardtii HOM05D006981 ORTHO05D008719 4.8e-64 247.7 125 100.0
Thhalv10015042m.g Eutrema salsugineum HOM05D006981 ORTHO05D008719 2.4e-15 85.9 115 41.7
Pp3c14_5260 Physcomitrium patens HOM05D006981 ORTHO05D008719 3.2e-15 85.5 124 43.5
PGR142G3060 Punica granatum HOM05D006981 ORTHO05D008719 3.2e-15 85.5 120 40.8
BcaC04g20601 Brassica carinata HOM05D006981 ORTHO05D008719 7.0e-15 84.3 115 40.0
BolC9t57050H Brassica oleracea HOM05D006981 ORTHO05D008719 7.0e-15 84.3 115 40.0
EL10Ac3g05672 Beta vulgaris HOM05D006981 ORTHO05D008719 9.2e-15 84.0 123 41.5
C09p41630 Brassica napus HOM05D006981 ORTHO05D008719 9.2e-15 84.0 115 40.0
Aa31LG3G8600 Aethionema arabicum HOM05D006981 ORTHO05D008719 1.6e-14 83.2 115 40.0
arahy.Tifrunner.gnm1.ann1.8WRD93 Arachis hypogaea HOM05D006981 ORTHO05D008719 1.6e-14 83.2 121 43.8
Potri.015G140200 Populus trichocarpa HOM05D006981 ORTHO05D008719 1.6e-14 83.2 114 42.1
RcHm_v2.0_Chr1g0377021 Rosa chinensis HOM05D006981 ORTHO05D008719 1.6e-14 83.2 111 45.0
SMO141G0174 Selaginella moellendorffii HOM05D006981 ORTHO05D008719 1.6e-14 83.2 116 41.4
MSTRG.27124 Avicennia marina HOM05D006981 ORTHO05D008719 2.1e-14 82.8 119 42.0
SGA_v2.0_scaffold2G01066 Striga asiatica HOM05D006981 ORTHO05D008719 2.1e-14 82.8 118 40.7
CsaV3_5G005720 Cucumis sativus L. HOM05D006981 ORTHO05D008719 2.7e-14 82.4 118 41.5
arahy.Tifrunner.gnm1.ann1.T9EWQW Arachis hypogaea HOM05D006981 ORTHO05D008719 3.5e-14 82.0 118 44.1
MELO3C005381.2 Cucumis melo HOM05D006981 ORTHO05D008719 3.5e-14 82.0 118 39.8
Manes.06G146000 Manihot esculenta HOM05D006981 ORTHO05D008719 3.5e-14 82.0 113 43.4
A10p09920 Brassica napus HOM05D006981 ORTHO05D008719 4.6e-14 81.6 110 40.9
CDE08G1025 Ceratophyllum demersum HOM05D006981 ORTHO05D008719 4.6e-14 81.6 115 39.1
HanXRQChr08g0209251 Helianthus annuus HOM05D006981 ORTHO05D008719 4.6e-14 81.6 117 39.3
SalBow4G1422 Salvia bowleyana HOM05D006981 ORTHO05D008719 4.6e-14 81.6 110 41.8
SalBow4G2131 Salvia bowleyana HOM05D006981 ORTHO05D008719 4.6e-14 81.6 110 41.8
Eucgr.K00242 Eucalyptus grandis HOM05D006981 ORTHO05D008719 6.0e-14 81.3 114 43.9
BraA10t43072Z Brassica rapa HOM05D006981 ORTHO05D008719 7.8e-14 80.9 110 40.0
PSO782G4575 Papaver somniferum HOM05D006981 ORTHO05D008719 7.8e-14 80.9 117 42.7
CANSAT21G0349 Cannabis sativa HOM05D006981 ORTHO05D008719 1.0e-13 80.5 114 43.9
CBR_g4805 Chara braunii HOM05D006981 ORTHO05D008719 1.0e-13 80.5 109 42.2
FvH4_7g29270 Fragaria vesca HOM05D006981 ORTHO05D008719 1.0e-13 80.5 112 42.9
FAN03G1713 Fragaria x ananassa HOM05D006981 ORTHO05D008719 1.0e-13 80.5 112 42.9
FAN10G3446 Fragaria x ananassa HOM05D006981 ORTHO05D008719 1.0e-13 80.5 112 42.9
Sopen06g017220 Solanum pennellii HOM05D006981 ORTHO05D008719 1.0e-13 80.5 118 40.7
COL.COLO4_14290 Corchorus olitorius HOM05D006981 ORTHO05D008719 1.3e-13 80.1 112 43.8
Nitab4.5_0000080g0060 Nicotiana tabacum HOM05D006981 ORTHO05D008719 1.3e-13 80.1 117 38.5
Thecc.03G174800 Theobroma cacao HOM05D006981 ORTHO05D008719 1.3e-13 80.1 113 41.6
AL8G26600 Arabidopsis lyrata HOM05D006981 ORTHO05D008719 1.7e-13 79.7 121 38.8
Carub.0008s1231 Capsella rubella HOM05D006981 ORTHO05D008719 1.7e-13 79.7 121 39.7
Gohir.D08G111300 Gossypium hirsutum HOM05D006981 ORTHO05D008719 1.7e-13 79.7 113 41.6
Gorai.004G119200 Gossypium raimondii HOM05D006981 ORTHO05D008719 1.7e-13 79.7 113 41.6
Sabra15G0150900 Salix brachista HOM05D006981 ORTHO05D008719 1.7e-13 79.7 113 41.6
AT5G52220 Arabidopsis thaliana HOM05D006981 ORTHO05D008719 2.3e-13 79.3 121 38.8
CSS0044451 Camellia sinensis var. sinensis HOM05D006981 ORTHO05D008719 2.3e-13 79.3 118 41.5
ECA233G5478 Erigeron canadensis HOM05D006981 ORTHO05D008719 2.3e-13 79.3 125 37.6
Mapoly0027s0013 Marchantia polymorpha HOM05D006981 ORTHO05D008719 2.3e-13 79.3 130 36.9
PSO478G2189 Papaver somniferum HOM05D006981 ORTHO05D008719 2.3e-13 79.3 119 42.9
HPP92_028124 Vanilla planifolia HOM05D006981 ORTHO05D008719 2.3e-13 79.3 117 38.5
Ciclev10006231m.g Citrus clementina HOM05D006981 ORTHO05D008719 3.0e-13 79.0 113 41.6
FAN03G1998 Fragaria x ananassa HOM05D006981 ORTHO05D008719 3.0e-13 79.0 112 42.0
GSVIVG01010548001 Vitis vinifera HOM05D006981 ORTHO05D008719 3.0e-13 79.0 118 39.8
BcaB08g35575 Brassica carinata HOM05D006981 ORTHO05D008719 3.9e-13 78.6 115 38.3
AUR62016001 Chenopodium quinoa HOM05D006981 ORTHO05D008719 3.9e-13 78.6 118 42.4
Duzib205G0859 Durio zibethinus HOM05D006981 ORTHO05D008719 3.9e-13 78.6 113 41.6
Sc19g0001580 Simmondsia chinensis HOM05D006981 ORTHO05D008719 3.9e-13 78.6 118 39.8
PGSC0003DMG400015647 Solanum tuberosum HOM05D006981 ORTHO05D008719 3.9e-13 78.6 117 40.2
THA.LOC104825097 Tarenaya hassleriana HOM05D006981 ORTHO05D008719 3.9e-13 78.6 116 41.4
CAN.G28.6 Capsicum annuum HOM05D006981 ORTHO05D008719 5.1e-13 78.2 117 39.3
Medtr6g471020 Medicago truncatula HOM05D006981 ORTHO05D008719 5.1e-13 78.2 121 42.1
HPP92_020865 Vanilla planifolia HOM05D006981 ORTHO05D008719 5.1e-13 78.2 117 37.6
Duzib084G0697 Durio zibethinus HOM05D006981 ORTHO05D008719 6.6e-13 77.8 113 39.8
Lj2g0020265 Lotus japonicus HOM05D006981 ORTHO05D008719 6.6e-13 77.8 118 43.2
MBI17_g21049_MAGBIO Magnolia biondii HOM05D006981 ORTHO05D008719 6.6e-13 77.8 117 41.0
Nitab4.5_0019580g0020 Nicotiana tabacum HOM05D006981 ORTHO05D008719 6.6e-13 77.8 115 38.3
Sp6g14470 Schrenkiella parvula HOM05D006981 ORTHO05D008719 6.6e-13 77.8 115 38.3
CiPaw.03G105000 Carya illinoinensis HOM05D006981 ORTHO05D008719 8.6e-13 77.4 118 39.0
FAN01G2034 Fragaria x ananassa HOM05D006981 ORTHO05D008719 8.6e-13 77.4 111 41.4
Cfa008306 Carpinus fangiana HOM05D006981 ORTHO05D008719 1.1e-12 77.0 115 40.9
AUR62021209 Chenopodium quinoa HOM05D006981 ORTHO05D008719 1.1e-12 77.0 116 41.4
Cc02_g03150 Coffea canephora HOM05D006981 ORTHO05D008719 1.1e-12 77.0 120 38.3
Haze_13729 Corylus avellana HOM05D006981 ORTHO05D008719 1.1e-12 77.0 115 40.9
Glyma.09G140600 Glycine max HOM05D006981 ORTHO05D008719 1.1e-12 77.0 118 42.4
Lj1C995G12 Lonicera japonica HOM05D006981 ORTHO05D008719 1.1e-12 77.0 116 38.8
MD07G1267100 Malus domestica HOM05D006981 ORTHO05D008719 1.1e-12 77.0 113 42.5
Prupe.2G292700 Prunus persica HOM05D006981 ORTHO05D008719 1.1e-12 77.0 119 40.3
ClCG01G005500 Citrullus lanatus HOM05D003170 ORTHO05D008719 1.5e-12 76.6 117 40.2
Nn4g26525 Nelumbo nucifera HOM05D006981 ORTHO05D008719 1.5e-12 76.6 117 41.9
Oeu056238.2 Olea europaea HOM05D006981 ORTHO05D008719 1.5e-12 76.6 117 39.3
Phvul.004G118000 Phaseolus vulgaris HOM05D006981 ORTHO05D008719 1.9e-12 76.3 118 42.4
CARHR265140 Cardamine hirsuta HOM05D006981 ORTHO05D008719 2.5e-12 75.9 121 37.2
Cpa.g.sc107.36 Carica papaya HOM05D006981 ORTHO05D008719 2.5e-12 75.9 115 40.0
FAN06G1994 Fragaria x ananassa HOM05D006981 ORTHO05D008719 2.5e-12 75.9 112 39.3
vmacro06697 Vaccinium macrocarpon HOM05D006981 ORTHO05D008719 2.5e-12 75.9 117 38.5
Atru.chr1.479 Acer truncatum HOM05D006981 ORTHO05D008719 3.3e-12 75.5 115 39.1
Glyma.16G194500 Glycine max HOM05D006981 ORTHO05D008719 3.3e-12 75.5 118 41.5
Gohir.A08G100300 Gossypium hirsutum HOM05D006981 ORTHO05D008719 3.3e-12 75.5 113 40.7
Manes.09G002400 Manihot esculenta HOM05D006981 ORTHO05D008719 3.3e-12 75.5 111 42.3
QL09p014567 Quercus lobata HOM05D006981 ORTHO05D008719 4.3e-12 75.1 124 37.9
Solyc06g051300.3 Solanum lycopersicum HOM05D006981 ORTHO05D008719 5.6e-12 74.7 116 39.7
Hma1.2p1_0270F.1_g108180 Hydrangea macrophylla HOM05D006981 ORTHO05D008719 7.3e-12 74.3 115 39.1
Aqoxy7G00390 Aquilegia oxysepala HOM05D006981 ORTHO05D008719 9.5e-12 73.9 111 39.6
Migut.F00354 Erythranthe guttata HOM05D006981 ORTHO05D008719 9.5e-12 73.9 119 37.8
Hund11756 Selenicereus undatus HOM05D006981 ORTHO05D008719 9.5e-12 73.9 116 39.7
TWI14G0356 Tripterygium wilfordii HOM05D006981 ORTHO05D008719 1.6e-11 73.2 115 40.0
TAR375G0811 Trochodendron aralioides HOM05D006981 ORTHO05D008719 1.6e-11 73.2 121 36.4
DCAR_009354 Daucus carota HOM05D006981 ORTHO05D008719 2.1e-11 72.8 116 36.2
Lsat_1_v5_gn_8_8340 Lactuca sativa HOM05D006981 ORTHO05D008719 2.8e-11 72.4 118 35.6
Sed0011448 Sechium edule HOM05D006981 ORTHO05D008719 2.8e-11 72.4 120 38.3
Zm00001eb309380 Zea mays HOM05D006981 ORTHO05D008719 2.8e-11 72.4 123 39.8
Ah.13g068510 Amaranthus hybridus HOM05D006981 ORTHO05D008719 4.7e-11 71.6 123 38.2
AagrBONN_evm.TU.Sc2ySwM_369.83 Anthoceros agrestis HOM05D006981 ORTHO05D008719 4.7e-11 71.6 112 37.5
SEGI_30853 Sequoiadendron giganteum HOM05D006981 ORTHO05D008719 6.2e-11 71.2 71 46.5
Ca_25351_v3 Cicer arietinum L. HOM05D000367 ORTHO05D001438 8.1e-11 70.9 119 37.0
VMungo0464G1391 Vigna mungo HOM05D006981 ORTHO05D008719 1.1e-10 70.5 116 41.4
unitig_747.g21767 Utricularia gibba HOM05D006981 ORTHO05D008719 1.4e-10 70.1 122 36.9
Psat1g030600 Pisum sativum HOM05D006981 ORTHO05D008719 2.3e-10 69.3 72 48.6
FAN06G2660 Fragaria x ananassa HOM05D006981 ORTHO05D008719 5.2e-10 68.2 112 37.5
Actinidia32871 Actinidia chinensis HOM05D006981 ORTHO05D008719 1.2e-09 67.0 144 33.3
Lalb_Chr19g0130931 Lupinus albus HOM05D006981 ORTHO05D008719 2.6e-09 65.9 117 38.5
PRCOL_00004746 Prasinoderma coloniale HOM05D006981 ORTHO05D008719 2.6e-09 65.9 130 31.5
Peaxi162Scf00040g00323 Petunia axillaris HOM05D006981 ORTHO05D008719 1.1e-07 60.5 117 32.5
SHI13798 Sapria himalayana HOM05D006981 ORTHO05D008719 1.1e-07 60.5 138 32.6


User provided reference genes

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