Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre06.g278116 Chlamydomonas reinhardtii HOM05D005909 ORTHO05D007481 2.8e-253 878.2 481 100.0
PRCOL_00006609 Prasinoderma coloniale HOM05D005909 ORTHO05D007481 2.9e-69 266.9 450 40.0
MCO06G004 Micromonas commoda HOM05D005909 ORTHO05D007481 2.6e-65 253.8 444 38.7
AagrBONN_evm.TU.Sc2ySwM_362.1435 Anthoceros agrestis HOM05D004406 ORTHO05D005660 9.8e-65 251.9 438 39.0
Mapoly0100s0051 Marchantia polymorpha HOM05D005909 ORTHO05D007481 2.9e-64 250.4 426 40.1
Lj5g0016761 Lotus japonicus HOM05D005909 ORTHO05D007481 5.4e-63 246.1 430 37.4
PGR119G2457 Punica granatum HOM05D005909 ORTHO05D007481 2.3e-61 240.7 438 37.7
arahy.Tifrunner.gnm1.ann1.IU6D7D Arachis hypogaea HOM05D005909 ORTHO05D007481 6.6e-61 239.2 433 37.9
BcaC06g34207 Brassica carinata HOM05D005909 ORTHO05D007481 2.5e-60 237.3 431 36.7
arahy.Tifrunner.gnm1.ann1.W577BF Arachis hypogaea HOM05D005909 ORTHO05D007481 9.5e-60 235.3 431 37.4
Pp3c3_16750 Physcomitrium patens HOM05D005909 ORTHO05D007481 9.5e-60 235.3 432 39.8
Aqoxy3G04056 Aquilegia oxysepala HOM05D005909 ORTHO05D007481 1.2e-59 235.0 429 38.0
Sp2g12680 Schrenkiella parvula HOM05D005909 ORTHO05D007481 1.2e-59 235.0 426 37.6
C07p31670 Brassica napus HOM05D005909 ORTHO05D007481 1.6e-59 234.6 432 36.8
BolC7t43706H Brassica oleracea HOM05D005909 ORTHO05D007481 1.6e-59 234.6 432 36.8
A06p44550 Brassica napus HOM05D005909 ORTHO05D007481 2.8e-59 233.8 432 37.0
BraA06t27329Z Brassica rapa HOM05D005909 ORTHO05D007481 6.2e-59 232.6 432 37.0
Prupe.1G316800 Prunus persica HOM05D005909 ORTHO05D007481 6.2e-59 232.6 431 36.4
VMungo0720G1068 Vigna mungo HOM05D005909 ORTHO05D007481 8.1e-59 232.3 432 36.1
Nitab4.5_0000694g0120 Nicotiana tabacum HOM05D005909 ORTHO05D007481 1.1e-58 231.9 427 37.5
AUR62037268 Chenopodium quinoa HOM05D005909 ORTHO05D007481 1.4e-58 231.5 424 36.8
Psat6g224680 Pisum sativum HOM05D005909 ORTHO05D007481 1.8e-58 231.1 450 35.6
CAN.G610.24 Capsicum annuum HOM05D005909 ORTHO05D007481 2.3e-58 230.7 426 37.1
Nn4g23953 Nelumbo nucifera HOM05D005909 ORTHO05D007481 2.3e-58 230.7 427 37.0
TPR.G4906 Trifolium pratense HOM05D005909 ORTHO05D007481 4.0e-58 229.9 430 36.0
Zm00001eb360650 Zea mays HOM05D005909 ORTHO05D007481 4.0e-58 229.9 426 37.1
Nitab4.5_0002112g0090 Nicotiana tabacum HOM05D005909 ORTHO05D007481 5.2e-58 229.6 426 36.9
Lalb_Chr21g0308731 Lupinus albus HOM05D005909 ORTHO05D007481 6.8e-58 229.2 428 36.4
Ca_06889_v3 Cicer arietinum L. HOM05D005909 ORTHO05D007481 8.9e-58 228.8 428 37.4
TWI79G1572 Tripterygium wilfordii HOM05D005909 ORTHO05D007481 8.9e-58 228.8 428 36.2
SMO196G0003 Selaginella moellendorffii HOM05D005909 ORTHO05D007481 1.5e-57 228.0 429 37.8
Lsat_1_v5_gn_3_62021 Lactuca sativa HOM05D005909 ORTHO05D007481 2.0e-57 227.6 431 37.8
DCAR_007264 Daucus carota HOM05D005909 ORTHO05D007481 2.6e-57 227.3 425 36.5
AUR62002812 Chenopodium quinoa HOM05D005909 ORTHO05D007481 3.4e-57 226.9 424 36.3
Eucgr.G02238 Eucalyptus grandis HOM05D005909 ORTHO05D007481 3.4e-57 226.9 426 36.4
Gohir.D02G171900 Gossypium hirsutum HOM05D005909 ORTHO05D007481 3.4e-57 226.9 432 36.3
Pp3c12_7340 Physcomitrium patens HOM05D005909 ORTHO05D007481 4.4e-57 226.5 433 40.4
CsaV3_5G028790 Cucumis sativus L. HOM05D005909 ORTHO05D007481 5.8e-57 226.1 423 37.4
Glyma.20G120600 Glycine max HOM05D005909 ORTHO05D007481 5.8e-57 226.1 428 36.2
AL5G10170 Arabidopsis lyrata HOM05D005909 ORTHO05D007481 7.5e-57 225.7 431 36.0
Medtr1g109590 Medicago truncatula HOM05D005909 ORTHO05D007481 9.8e-57 225.3 431 35.7
Phvul.007G032000 Phaseolus vulgaris HOM05D005909 ORTHO05D007481 9.8e-57 225.3 428 35.7
Aa31LG2G8670 Aethionema arabicum HOM05D005909 ORTHO05D007481 2.2e-56 224.2 429 36.1
MBI16_g44832_MAGBIO Magnolia biondii HOM05D005909 ORTHO05D007481 2.2e-56 224.2 426 36.9
FvH4_4g26720 Fragaria vesca HOM05D005909 ORTHO05D007481 2.9e-56 223.8 432 34.7
Solyc05g008870.3 Solanum lycopersicum HOM05D005909 ORTHO05D007481 2.9e-56 223.8 424 36.6
Sopen05g004630 Solanum pennellii HOM05D005909 ORTHO05D007481 2.9e-56 223.8 424 36.6
RcHm_v2.0_Chr4g0434411 Rosa chinensis HOM05D005909 ORTHO05D007481 4.9e-56 223.0 430 35.3
ECA246G0525 Erigeron canadensis HOM05D005909 ORTHO05D007481 6.4e-56 222.6 427 35.8
Potri.010G120200 Populus trichocarpa HOM05D005909 ORTHO05D007481 6.4e-56 222.6 425 35.8
Sed0017467 Sechium edule HOM05D005909 ORTHO05D007481 8.3e-56 222.2 431 36.4
CARHR143760 Cardamine hirsuta HOM05D005909 ORTHO05D007481 1.1e-55 221.9 434 36.2
CiPaw.05G242600 Carya illinoinensis HOM05D005909 ORTHO05D007481 1.4e-55 221.5 429 35.4
Gorai.005G193400 Gossypium raimondii HOM05D005909 ORTHO05D007481 1.9e-55 221.1 438 35.8
HanXRQChr15g0477421 Helianthus annuus HOM05D005909 ORTHO05D007481 1.9e-55 221.1 428 35.7
Sc14g0007280 Simmondsia chinensis HOM05D005909 ORTHO05D007481 1.9e-55 221.1 427 37.5
Gohir.A03G148900 Gossypium hirsutum HOM05D005909 ORTHO05D007481 2.4e-55 220.7 439 36.2
PSO782G5715 Papaver somniferum HOM05D005909 ORTHO05D007481 2.4e-55 220.7 428 36.2
Thhalv10000909m.g Eutrema salsugineum HOM05D005909 ORTHO05D007481 3.2e-55 220.3 431 35.3
GSVIVG01011843001 Vitis vinifera HOM05D005909 ORTHO05D007481 3.2e-55 220.3 435 35.4
MSTRG.13555 Avicennia marina HOM05D005909 ORTHO05D007481 5.4e-55 219.5 429 36.1
EL10Ac6g14305 Beta vulgaris HOM05D005909 ORTHO05D007481 5.4e-55 219.5 430 35.8
MELO3C005340.2 Cucumis melo HOM05D005909 ORTHO05D007481 5.4e-55 219.5 423 36.6
MD16G1037200 Malus domestica HOM05D005909 ORTHO05D007481 7.1e-55 219.2 429 35.2
AL5G17030 Arabidopsis lyrata HOM05D005909 ORTHO05D007481 1.2e-54 218.4 433 35.6
Carub.0005s0605 Capsella rubella HOM05D005909 ORTHO05D007481 1.6e-54 218.0 429 35.4
QL01p010815 Quercus lobata HOM05D005909 ORTHO05D007481 1.6e-54 218.0 430 35.3
QL93p0145_0024 Quercus lobata HOM05D005909 ORTHO05D007481 1.6e-54 218.0 430 35.3
AT2G01220 Arabidopsis thaliana HOM05D005909 ORTHO05D007481 2.1e-54 217.6 427 35.4
CDE08G1136 Ceratophyllum demersum HOM05D005909 ORTHO05D007481 2.1e-54 217.6 427 35.4
THA.LOC104823950 Tarenaya hassleriana HOM05D005909 ORTHO05D007481 2.1e-54 217.6 429 35.4
ATR0807G244 Amborella trichopoda HOM05D005909 ORTHO05D007481 3.5e-54 216.9 426 35.7
Ciclev10015519m.g Citrus clementina HOM05D005909 ORTHO05D007481 4.6e-54 216.5 444 35.1
Duzib248G1493 Durio zibethinus HOM05D005909 ORTHO05D007481 4.6e-54 216.5 434 35.7
AT3G27610 Arabidopsis thaliana HOM05D005909 ORTHO05D007481 1.7e-53 214.5 433 34.9
Cc11_g09670 Coffea canephora HOM05D005909 ORTHO05D007481 1.7e-53 214.5 426 36.9
Hund20744 Selenicereus undatus HOM05D005909 ORTHO05D007481 1.7e-53 214.5 428 36.0
COL.COLO4_32148 Corchorus olitorius HOM05D005909 ORTHO05D007481 2.3e-53 214.2 429 34.3
Sabra10G0090400 Salix brachista HOM05D005909 ORTHO05D007481 3.9e-53 213.4 426 34.3
SalBow8G3248 Salvia bowleyana HOM05D005909 ORTHO05D007481 5.1e-53 213.0 424 36.3
Atru.chr11.237 Acer truncatum HOM05D005909 ORTHO05D007481 6.6e-53 212.6 426 35.4
TAR622G1259 Trochodendron aralioides HOM05D005909 ORTHO05D007481 6.6e-53 212.6 426 34.7
vmacro10599 Vaccinium macrocarpon HOM05D005909 ORTHO05D007481 8.6e-53 212.2 430 35.6
Cpa.g.sc65.66 Carica papaya HOM05D005909 ORTHO05D007481 1.1e-52 211.8 426 34.5
CSS0033004 Camellia sinensis var. sinensis HOM05D005909 ORTHO05D007481 1.9e-52 211.1 428 35.5
Actinidia14921 Actinidia chinensis HOM05D005909 ORTHO05D007481 2.1e-51 207.6 429 35.0
CARHR148990 Cardamine hirsuta HOM05D005909 ORTHO05D007481 2.8e-51 207.2 427 34.9
Hma1.2p1_1314F.1_g274990 Hydrangea macrophylla HOM05D005909 ORTHO05D007481 3.6e-51 206.8 429 35.0
SalBow8G0352 Salvia bowleyana HOM05D005909 ORTHO05D007481 4.7e-51 206.5 431 36.0
Cfa015837 Carpinus fangiana HOM05D005909 ORTHO05D007481 8.1e-51 205.7 432 34.7
Hma1.2p1_2306F.1_g319360 Hydrangea macrophylla HOM05D005909 ORTHO05D007481 1.4e-50 204.9 429 34.7
Rhsim09G0103900 Rhododendron simsii HOM05D005909 ORTHO05D007481 2.3e-50 204.1 431 35.3
Lj6A753G52 Lonicera japonica HOM05D005909 ORTHO05D007481 3.1e-50 203.8 427 33.7
Dinv16136 Davidia involucrata HOM05D005909 ORTHO05D007481 5.2e-50 203.0 427 34.4
HPP92_024514 Vanilla planifolia HOM05D005909 ORTHO05D007481 1.7e-48 198.0 431 34.1
Ah.03g138370 Amaranthus hybridus HOM05D005909 ORTHO05D007481 1.4e-47 194.9 404 34.9
PSO063G1187 Papaver somniferum HOM05D005909 ORTHO05D007481 1.9e-47 194.5 397 35.5
ClCG01G005900 Citrullus lanatus HOM05D005909 ORTHO05D007481 2.7e-46 190.7 426 34.0
Peaxi162Scf00179g00534 Petunia axillaris HOM05D005909 ORTHO05D007481 2.7e-46 190.7 426 34.3
unitig_699.g19483 Utricularia gibba HOM05D005909 ORTHO05D007481 7.8e-46 189.1 423 35.0
Haze_00654 Corylus avellana HOM05D005909 ORTHO05D007481 6.2e-43 179.5 559 29.0
Migut.E00369 Erythranthe guttata HOM05D005909 ORTHO05D007481 8.1e-43 179.1 474 32.1
FAN07G1481 Fragaria x ananassa HOM05D005909 ORTHO05D007481 2.0e-41 174.5 382 33.5
Thecc.02G222000 Theobroma cacao HOM05D005909 ORTHO05D007481 1.6e-38 164.9 354 34.2
Manes.06G064900 Manihot esculenta HOM05D005909 ORTHO05D007481 2.5e-36 157.5 359 32.0
Actinidia16683 Actinidia chinensis HOM05D005909 ORTHO05D007481 5.3e-34 149.8 354 33.3
Os01g0691500 Oryza sativa ssp. japonica HOM05D005909 ORTHO05D007481 6.9e-34 149.4 315 36.2
FAN12G0185 Fragaria x ananassa HOM05D005909 ORTHO05D007481 9.0e-34 149.1 355 31.0
FAN12G0127 Fragaria x ananassa HOM05D005909 ORTHO05D007481 2.6e-33 147.5 345 30.7
FAN22G0620 Fragaria x ananassa HOM05D005909 ORTHO05D007481 4.9e-32 143.3 345 30.7
Carub.0005s0021 Capsella rubella HOM05D005909 ORTHO05D007481 1.6e-30 138.3 214 39.3
Oeu027686.1 Olea europaea HOM05D005909 ORTHO05D007481 2.1e-30 137.9 425 30.8
CANSAT01G0643 Cannabis sativa HOM05D005909 ORTHO05D007481 1.3e-29 135.2 316 30.4
SGA_v2.0_scaffold14G06904 Striga asiatica HOM05D005909 ORTHO05D007481 4.8e-27 126.7 271 35.8
Carub.0005s0593 Capsella rubella HOM05D005909 ORTHO05D007481 6.2e-27 126.3 157 45.9
FAN17G2694 Fragaria x ananassa HOM05D005909 ORTHO05D007481 1.1e-26 125.6 178 39.9
SEGI_08541 Sequoiadendron giganteum HOM05D005909 ORTHO05D007481 6.9e-26 122.9 149 48.3
TAR622G0977 Trochodendron aralioides HOM05D005909 ORTHO05D007481 2.0e-25 121.3 175 38.9
PGSC0003DMG401030529 Solanum tuberosum HOM05D005909 ORTHO05D007481 5.8e-25 119.8 148 47.3
Dinv31596 Davidia involucrata HOM05D005909 ORTHO05D007481 1.3e-24 118.6 379 29.3
SGA_v2.0_scaffold14G06901 Striga asiatica HOM05D005909 ORTHO05D007481 3.0e-21 107.5 137 43.1
Oeu027687.1 Olea europaea HOM05D005909 ORTHO05D007481 1.1e-18 99.0 111 52.3
CBR_g39317 Chara braunii HOM05D005909 ORTHO05D007481 3.8e-16 90.5 235 32.3
SEGI_29486 Sequoiadendron giganteum HOM05D005909 ORTHO05D007481 4.2e-15 87.0 111 42.3
CBR_g39316 Chara braunii HOM05D000019 ORTHO05D000002 5.5e-07 60.1 74 44.6
BcaC06g31323 Brassica carinata HOM05D005909 ORTHO05D007481 2.7e-06 57.8 60 53.3


User provided reference genes

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