Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre06.g275150 Chlamydomonas reinhardtii HOM05D006091 ORTHO05D006421 0.0e+00 3263.8 2191 100.0
Thhalv10019992m.g Eutrema salsugineum HOM05D006091 ORTHO05D006421 4.5e-32 145.6 216 39.4
Sed0015233 Sechium edule HOM05D006091 ORTHO05D006421 5.9e-32 145.2 238 37.8
ECA236G3389 Erigeron canadensis HOM05D006091 ORTHO05D006421 1.7e-31 143.7 232 36.2
SMO117G0101 Selaginella moellendorffii HOM05D006091 ORTHO05D006421 1.7e-31 143.7 229 38.0
Lsat_1_v5_gn_8_88561 Lactuca sativa HOM05D006091 ORTHO05D006421 2.9e-31 142.9 229 36.7
SEGI_30787 Sequoiadendron giganteum HOM05D006091 ORTHO05D006421 2.9e-31 142.9 241 37.3
MELO3C021115.2 Cucumis melo HOM05D006091 ORTHO05D006421 6.5e-31 141.7 238 36.6
CsaV3_7G026640 Cucumis sativus L. HOM05D006091 ORTHO05D006421 6.5e-31 141.7 238 36.6
arahy.Tifrunner.gnm1.ann1.23KP9R Arachis hypogaea HOM05D006091 ORTHO05D006421 8.5e-31 141.4 237 36.3
arahy.Tifrunner.gnm1.ann1.ZLM6RM Arachis hypogaea HOM05D006091 ORTHO05D006421 8.5e-31 141.4 237 36.3
Aqoxy2G03964 Aquilegia oxysepala HOM05D006091 ORTHO05D006421 1.1e-30 141.0 233 36.5
HanXRQChr04g0107951 Helianthus annuus HOM05D006091 ORTHO05D006421 1.1e-30 141.0 238 36.1
Gorai.007G158500 Gossypium raimondii HOM05D006091 ORTHO05D006421 1.5e-30 140.6 238 37.0
ATR0609G072 Amborella trichopoda HOM05D006091 ORTHO05D006421 2.5e-30 139.8 236 36.0
Gohir.A11G141600 Gossypium hirsutum HOM05D006091 ORTHO05D006421 2.5e-30 139.8 238 36.6
Gohir.D11G147900 Gossypium hirsutum HOM05D006091 ORTHO05D006421 2.5e-30 139.8 238 37.0
PSO675G5723 Papaver somniferum HOM05D006091 ORTHO05D006421 2.5e-30 139.8 234 36.3
Aa31LG5G17970 Aethionema arabicum HOM05D006091 ORTHO05D006421 4.2e-30 139.0 237 36.3
Hma1.2p1_2027F.1_g311640 Hydrangea macrophylla HOM05D006091 ORTHO05D006421 4.2e-30 139.0 232 35.3
TAR362G0363 Trochodendron aralioides HOM05D006091 ORTHO05D006421 5.5e-30 138.7 237 34.6
Zm00001eb202960 Zea mays HOM05D006091 ORTHO05D006421 5.5e-30 138.7 233 36.9
C05p59890 Brassica napus HOM05D006091 ORTHO05D006421 7.2e-30 138.3 234 36.3
Ciclev10030603m.g Citrus clementina HOM05D006091 ORTHO05D006421 7.2e-30 138.3 237 35.0
Gohir.A07G090700 Gossypium hirsutum HOM05D006091 ORTHO05D006421 7.2e-30 138.3 234 36.8
Hund18485 Selenicereus undatus HOM05D006091 ORTHO05D006421 7.2e-30 138.3 238 37.4
AL3G18700 Arabidopsis lyrata HOM05D006091 ORTHO05D006421 9.4e-30 137.9 231 36.8
Carub.0003s0694 Capsella rubella HOM05D006091 ORTHO05D006421 9.4e-30 137.9 232 36.6
CiPaw.13G053400 Carya illinoinensis HOM05D006091 ORTHO05D006421 9.4e-30 137.9 238 35.3
FAN27G2037 Fragaria x ananassa HOM05D006091 ORTHO05D006421 9.4e-30 137.9 238 36.1
Lalb_Chr13g0291021 Lupinus albus HOM05D006091 ORTHO05D006421 9.4e-30 137.9 237 35.0
Medtr8g011610 Medicago truncatula HOM05D006091 ORTHO05D006421 9.4e-30 137.9 237 35.4
Psat0s4060g0040 Pisum sativum HOM05D006091 ORTHO05D006421 9.4e-30 137.9 237 35.0
vmacro02807 Vaccinium macrocarpon HOM05D006091 ORTHO05D006421 9.4e-30 137.9 238 35.7
BolC5t34643H Brassica oleracea HOM05D006091 ORTHO05D006421 1.2e-29 137.5 237 36.3
AUR62001194 Chenopodium quinoa HOM05D006091 ORTHO05D006421 1.2e-29 137.5 250 34.8
AUR62022134 Chenopodium quinoa HOM05D006091 ORTHO05D006421 1.2e-29 137.5 250 34.8
Lj2C1118G19 Lonicera japonica HOM05D006091 ORTHO05D006421 1.2e-29 137.5 236 35.2
Sc05g0001800 Simmondsia chinensis HOM05D006091 ORTHO05D006421 1.2e-29 137.5 238 36.1
A05p40780 Brassica napus HOM05D006091 ORTHO05D006421 1.6e-29 137.1 237 36.3
BraA05t22809Z Brassica rapa HOM05D006091 ORTHO05D006421 1.6e-29 137.1 237 36.3
TPR.G1980 Trifolium pratense HOM05D006091 ORTHO05D006421 1.6e-29 137.1 237 35.4
COL.COLO4_04501 Corchorus olitorius HOM05D006091 ORTHO05D006421 2.1e-29 136.7 238 35.7
Glyma.03G089000 Glycine max HOM05D006091 ORTHO05D006421 2.1e-29 136.7 237 34.6
Gohir.D07G095400 Gossypium hirsutum HOM05D006091 ORTHO05D006421 2.1e-29 136.7 234 36.3
Gorai.001G102700 Gossypium raimondii HOM05D006091 ORTHO05D006421 2.1e-29 136.7 234 36.3
Atru.chr6.1598 Acer truncatum HOM05D006091 ORTHO05D006421 2.7e-29 136.3 238 34.5
Ca_23191_v3 Cicer arietinum L. HOM05D006091 ORTHO05D006421 2.7e-29 136.3 237 34.6
Dinv12805 Davidia involucrata HOM05D006091 ORTHO05D006421 2.7e-29 136.3 238 34.5
FvH4_2g17990 Fragaria vesca HOM05D006091 ORTHO05D006421 2.7e-29 136.3 238 35.7
FAN15G2626 Fragaria x ananassa HOM05D006091 ORTHO05D006421 2.7e-29 136.3 238 35.7
FAN24G1597 Fragaria x ananassa HOM05D006091 ORTHO05D006421 2.7e-29 136.3 238 35.7
QL09p045696 Quercus lobata HOM05D006091 ORTHO05D006421 2.7e-29 136.3 238 35.3
Actinidia23366 Actinidia chinensis HOM05D006091 ORTHO05D006421 3.6e-29 136.0 237 34.6
Cc01_g16310 Coffea canephora HOM05D006091 ORTHO05D006421 3.6e-29 136.0 236 35.6
Potri.002G249400 Populus trichocarpa HOM05D006091 ORTHO05D006421 3.6e-29 136.0 238 35.7
AT3G07400 Arabidopsis thaliana HOM05D006091 ORTHO05D006421 4.7e-29 135.6 231 36.4
MD05G1163900 Malus domestica HOM05D006091 ORTHO05D006421 4.7e-29 135.6 235 36.2
Thecc.01G213100 Theobroma cacao HOM05D006091 ORTHO05D006421 4.7e-29 135.6 238 34.5
GSVIVG01002194001 Vitis vinifera HOM05D006091 ORTHO05D006421 6.1e-29 135.2 236 36.0
DCAR_004762 Daucus carota HOM05D006091 ORTHO05D006421 8.0e-29 134.8 234 35.0
MD10G1153600 Malus domestica HOM05D006091 ORTHO05D006421 8.0e-29 134.8 233 36.1
Solyc09g056350.4 Solanum lycopersicum HOM05D006091 ORTHO05D006421 8.0e-29 134.8 236 34.3
Sopen09g020500 Solanum pennellii HOM05D006091 ORTHO05D006421 8.0e-29 134.8 236 34.3
HPP92_009934 Vanilla planifolia HOM05D006091 ORTHO05D006421 8.0e-29 134.8 238 34.0
Lj3g0004892 Lotus japonicus HOM05D006091 ORTHO05D006421 1.0e-28 134.4 237 34.2
Sp3g06320 Schrenkiella parvula HOM05D006091 ORTHO05D006421 1.0e-28 134.4 235 35.7
CSS0012975 Camellia sinensis var. sinensis HOM05D006091 ORTHO05D006421 1.4e-28 134.0 238 34.5
RcHm_v2.0_Chr6g0283291 Rosa chinensis HOM05D006091 ORTHO05D006421 1.4e-28 134.0 233 35.6
MSTRG.17976 Avicennia marina HOM05D006091 ORTHO05D006421 1.8e-28 133.7 233 34.3
Migut.N00655 Erythranthe guttata HOM05D006091 ORTHO05D006421 1.8e-28 133.7 233 34.3
Nitab4.5_0009574g0010 Nicotiana tabacum HOM05D006091 ORTHO05D006421 1.8e-28 133.7 204 36.8
THA.LOC104802652 Tarenaya hassleriana HOM05D006091 ORTHO05D006421 1.8e-28 133.7 236 36.0
TWI75G0482 Tripterygium wilfordii HOM05D006091 ORTHO05D006421 2.3e-28 133.3 238 34.5
PSO017G2440 Papaver somniferum HOM05D006091 ORTHO05D006421 4.0e-28 132.5 238 35.3
Phvul.010G030600 Phaseolus vulgaris HOM05D006091 ORTHO05D006421 4.0e-28 132.5 239 34.7
CANSAT01G2939 Cannabis sativa HOM05D006091 ORTHO05D006421 8.8e-28 131.3 244 34.0
Nitab4.5_0000038g0010 Nicotiana tabacum HOM05D006091 ORTHO05D006421 8.8e-28 131.3 236 35.2
EL10Ac7g17981 Beta vulgaris HOM05D006091 ORTHO05D006421 1.2e-27 131.0 238 35.7
PGR083G0226 Punica granatum HOM05D006091 ORTHO05D006421 1.5e-27 130.6 217 37.3
Oeu003643.1 Olea europaea HOM05D006091 ORTHO05D006421 2.6e-27 129.8 233 33.5
Pp3c23_8470 Physcomitrium patens HOM05D006091 ORTHO05D006421 3.3e-27 129.4 251 32.7
Mapoly0057s0040 Marchantia polymorpha HOM05D006091 ORTHO05D006421 5.7e-27 128.6 252 33.3
SEGI_05193 Sequoiadendron giganteum HOM05D006091 ORTHO05D006421 7.5e-27 128.3 250 33.6
SGA_v2.0_scaffold77G25288 Striga asiatica HOM05D006091 ORTHO05D006421 9.7e-27 127.9 253 32.4
Eucgr.H00733 Eucalyptus grandis HOM05D006091 ORTHO05D006421 4.8e-26 125.6 218 35.8
Rhsim13G0051700 Rhododendron simsii HOM05D006091 ORTHO05D006421 1.8e-25 123.6 258 32.2
Haze_03314 Corylus avellana HOM05D006091 ORTHO05D006421 2.0e-24 120.2 188 38.3
Manes.12G052100 Manihot esculenta HOM05D006091 ORTHO05D006421 2.2e-23 116.7 190 37.9
CiPaw.14G042600 Carya illinoinensis HOM05D006091 ORTHO05D006421 1.1e-22 114.4 221 32.1
Nn1g08059 Nelumbo nucifera HOM05D006091 ORTHO05D006421 1.9e-22 113.6 188 35.6
Peaxi162Scf00054g00172 Petunia axillaris HOM05D006091 ORTHO05D006421 3.6e-21 109.4 220 34.1
unitig_699.g19751 Utricularia gibba HOM05D006091 ORTHO05D006421 1.5e-19 104.0 218 33.9
Glyma.16G084200 Glycine max HOM05D006091 ORTHO05D006421 5.7e-19 102.1 110 48.2
MCO04G344 Micromonas commoda HOM05D006091 ORTHO05D006421 4.8e-18 99.0 141 44.0
PRCOL_00000494 Prasinoderma coloniale HOM05D006091 ORTHO05D006421 5.9e-16 92.0 227 34.8
Cpa.g.sc8.88 Carica papaya HOM05D006091 ORTHO05D006421 1.9e-14 87.0 188 30.3
SEGI_40198 Sequoiadendron giganteum HOM05D018154 ORTHO05D015856 3.6e-13 82.8 147 34.7
Prupe.8G192400 Prunus persica HOM05D006091 ORTHO05D006421 6.1e-13 82.0 169 30.8
Mapoly0081s0074 Marchantia polymorpha HOM05D018154 ORTHO05D015856 4.4e-11 75.9 142 35.9
Ah.08g218720 Amaranthus hybridus HOM05D006091 ORTHO05D006421 5.7e-11 75.5 226 29.2
AagrBONN_evm.TU.Sc2ySwM_117.1853 Anthoceros agrestis HOM05D018154 ORTHO05D015856 5.7e-11 75.5 128 37.5
Pp3c7_7930 Physcomitrium patens HOM05D018154 ORTHO05D015856 5.7e-11 75.5 119 42.0
Pp3c11_21990 Physcomitrium patens HOM05D018154 ORTHO05D015856 1.3e-10 74.3 119 41.2
Pp3c11_21996 Physcomitrium patens HOM05D018154 ORTHO05D015856 1.3e-10 74.3 119 41.2
SMO118G0083 Selaginella moellendorffii HOM05D018154 ORTHO05D015856 1.4e-09 70.9 140 34.3
AagrBONN_evm.TU.Sc2ySwM_344.2493 Anthoceros agrestis HOM05D041500 ORTHO05D015856 4.1e-09 69.3 143 34.3
ECA246G4314 Erigeron canadensis HOM05D000938 ORTHO05D001451 6.6e-07 62.0 171 26.9
QL10p041154 Quercus lobata HOM05D000938 ORTHO05D001451 8.6e-07 61.6 110 34.5
EL10Ac4g09634 Beta vulgaris HOM05D000938 ORTHO05D001451 1.9e-06 60.5 105 33.3
SMO361G0373 Selaginella moellendorffii HOM05D041500 ORTHO05D015856 1.9e-06 60.5 136 33.1
SMO361G0143 Selaginella moellendorffii HOM05D041500 ORTHO05D015856 3.3e-06 59.7 136 32.4
HanXRQChr05g0151531 Helianthus annuus HOM05D000938 ORTHO05D001451 4.3e-06 59.3 170 25.3
SEGI_35772 Sequoiadendron giganteum HOM05D000938 ORTHO05D001451 4.3e-06 59.3 116 34.5
AUR62006871 Chenopodium quinoa HOM05D000938 ORTHO05D001451 5.6e-06 58.9 75 38.7
Nitab4.5_0006396g0010 Nicotiana tabacum HOM05D000938 ORTHO05D001451 9.5e-06 58.2 193 24.4


User provided reference genes

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