Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre06.g272850 Chlamydomonas reinhardtii HOM05D004659 ORTHO05D005547 5.6e-122 441.0 236 100.0
MD10G1183400 Malus domestica HOM05D004659 ORTHO05D005547 7.3e-21 105.1 170 36.5
SMO239G0117 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 7.3e-21 105.1 166 38.6
MD05G1196100 Malus domestica HOM05D004659 ORTHO05D005547 1.6e-20 104.0 170 36.5
Medtr4g131540 Medicago truncatula HOM05D004659 ORTHO05D005547 2.1e-20 103.6 188 34.6
vmacro04881 Vaccinium macrocarpon HOM05D004659 ORTHO05D005547 2.8e-20 103.2 197 34.5
CiPaw.02G177400 Carya illinoinensis HOM05D004659 ORTHO05D005547 3.6e-20 102.8 200 33.0
CDE02G4355 Ceratophyllum demersum HOM05D002697 ORTHO05D005547 3.6e-20 102.8 179 37.4
Haze_22491 Corylus avellana HOM05D004659 ORTHO05D005547 3.6e-20 102.8 175 34.9
Cfa013817 Carpinus fangiana HOM05D004659 ORTHO05D005547 4.7e-20 102.4 175 35.4
CDE09G1094 Ceratophyllum demersum HOM05D004659 ORTHO05D005547 6.2e-20 102.1 177 37.3
Prupe.8G222500 Prunus persica HOM05D004659 ORTHO05D005547 8.1e-20 101.7 167 35.9
Nitab4.5_0000691g0220 Nicotiana tabacum HOM05D004659 ORTHO05D005547 1.1e-19 101.3 198 34.8
Oeu017240.1 Olea europaea HOM05D004659 ORTHO05D005547 1.1e-19 101.3 212 34.9
PSO339G6228 Papaver somniferum HOM05D004659 ORTHO05D005547 1.1e-19 101.3 209 34.4
QL08p057255 Quercus lobata HOM05D004659 ORTHO05D005547 1.4e-19 100.9 183 35.5
Nitab4.5_0004104g0080 Nicotiana tabacum HOM05D004659 ORTHO05D005547 1.8e-19 100.5 198 34.3
PSO384G3929 Papaver somniferum HOM05D004659 ORTHO05D005547 1.8e-19 100.5 209 34.0
Peaxi162Scf00195g00083 Petunia axillaris HOM05D004659 ORTHO05D005547 2.3e-19 100.1 199 33.7
Rhsim03G0135900 Rhododendron simsii HOM05D004659 ORTHO05D005547 5.2e-19 99.0 207 33.3
Aqoxy4G03156 Aquilegia oxysepala HOM05D004659 ORTHO05D005547 6.8e-19 98.6 173 37.0
arahy.Tifrunner.gnm1.ann1.23T474 Arachis hypogaea HOM05D004659 ORTHO05D005547 6.8e-19 98.6 195 33.8
CAN.G186.30 Capsicum annuum HOM05D004659 ORTHO05D005547 6.8e-19 98.6 207 32.4
AUR62036014 Chenopodium quinoa HOM05D004659 ORTHO05D005547 1.2e-18 97.8 193 33.2
Psat4g007600 Pisum sativum HOM05D004659 ORTHO05D005547 1.2e-18 97.8 186 33.9
RcHm_v2.0_Chr6g0287931 Rosa chinensis HOM05D004659 ORTHO05D005547 1.5e-18 97.4 170 35.9
THA.LOC104827313 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 1.5e-18 97.4 192 34.4
DCAR_019149 Daucus carota HOM05D004659 ORTHO05D005547 2.0e-18 97.1 167 35.9
Mapoly0115s0051 Marchantia polymorpha HOM05D004659 ORTHO05D005547 2.0e-18 97.1 172 36.6
Pp3c1_1330 Physcomitrium patens HOM05D004659 ORTHO05D005547 2.0e-18 97.1 169 36.7
Sabra10G0166900 Salix brachista HOM05D004659 ORTHO05D005547 2.0e-18 97.1 202 32.2
PGSC0003DMG400032570 Solanum tuberosum HOM05D004659 ORTHO05D005547 2.0e-18 97.1 199 34.2
Actinidia03015 Actinidia chinensis HOM05D004659 ORTHO05D005547 2.6e-18 96.7 186 32.8
CANSAT35G1484 Cannabis sativa HOM05D004659 ORTHO05D005547 2.6e-18 96.7 186 32.3
Lsat_1_v5_gn_9_66541 Lactuca sativa HOM05D004659 ORTHO05D005547 2.6e-18 96.7 172 34.9
Solyc04g009540.1 Solanum lycopersicum HOM05D004659 ORTHO05D005547 2.6e-18 96.7 204 33.3
Sopen04g004700 Solanum pennellii HOM05D004659 ORTHO05D005547 2.6e-18 96.7 204 33.3
THA.LOC104799364 Tarenaya hassleriana HOM05D004659 ORTHO05D005547 2.6e-18 96.7 192 33.3
AUR62027894 Chenopodium quinoa HOM05D004659 ORTHO05D005547 3.4e-18 96.3 213 31.0
Ca_21106_v3 Cicer arietinum L. HOM05D004659 ORTHO05D005547 3.4e-18 96.3 194 33.0
HanXRQChr09g0247171 Helianthus annuus HOM05D004659 ORTHO05D005547 3.4e-18 96.3 172 36.6
TAR369G1054 Trochodendron aralioides HOM05D004659 ORTHO05D005547 3.4e-18 96.3 201 33.8
VMungo0464G0639 Vigna mungo HOM05D004659 ORTHO05D005547 3.4e-18 96.3 188 33.5
FvH4_2g21340 Fragaria vesca HOM05D004659 ORTHO05D005547 4.4e-18 95.9 170 36.5
FAN24G1009 Fragaria x ananassa HOM05D004659 ORTHO05D005547 4.4e-18 95.9 170 36.5
Sed0009994 Sechium edule HOM05D004659 ORTHO05D005547 4.4e-18 95.9 171 33.9
ECA232G1287 Erigeron canadensis HOM05D004659 ORTHO05D005547 5.8e-18 95.5 173 34.1
Glyma.17G075900 Glycine max HOM05D004659 ORTHO05D005547 5.8e-18 95.5 167 36.5
Hma1.2p1_2685F.1_g326920 Hydrangea macrophylla HOM05D004659 ORTHO05D005547 5.8e-18 95.5 203 32.5
Potri.010G215900 Populus trichocarpa HOM05D004659 ORTHO05D005547 5.8e-18 95.5 202 31.7
Atru.chr12.612 Acer truncatum HOM05D004659 ORTHO05D005547 7.5e-18 95.1 206 31.1
CsaV3_5G006380 Cucumis sativus L. HOM05D004659 ORTHO05D005547 7.5e-18 95.1 172 34.9
Gohir.A05G298900 Gossypium hirsutum HOM05D004659 ORTHO05D005547 7.5e-18 95.1 192 32.8
Lj1P926T21 Lonicera japonica HOM05D004659 ORTHO05D005547 7.5e-18 95.1 196 32.7
Lj4g0017760 Lotus japonicus HOM05D004659 ORTHO05D005547 7.5e-18 95.1 170 35.9
Ah.10g033100 Amaranthus hybridus HOM05D004659 ORTHO05D005547 9.8e-18 94.7 222 29.7
Gohir.D05G298600 Gossypium hirsutum HOM05D004659 ORTHO05D005547 9.8e-18 94.7 192 32.8
Gorai.009G315800 Gossypium raimondii HOM05D004659 ORTHO05D005547 9.8e-18 94.7 192 32.8
Potri.008G045800 Populus trichocarpa HOM05D004659 ORTHO05D005547 9.8e-18 94.7 204 30.4
SalBow4G3080 Salvia bowleyana HOM05D004659 ORTHO05D005547 9.8e-18 94.7 183 35.5
Thecc.10G065300 Theobroma cacao HOM05D004659 ORTHO05D005547 9.8e-18 94.7 164 34.8
Phvul.004G002100 Phaseolus vulgaris HOM05D004659 ORTHO05D005547 1.3e-17 94.4 183 33.3
Manes.07G069200 Manihot esculenta HOM05D004659 ORTHO05D005547 1.7e-17 94.0 199 31.2
Pp3c2_35950 Physcomitrium patens HOM05D004659 ORTHO05D005547 1.7e-17 94.0 169 34.9
Cpa.g.sc1.279 Carica papaya HOM05D004659 ORTHO05D005547 2.9e-17 93.2 192 30.7
MELO3C011720.2 Cucumis melo HOM05D004659 ORTHO05D005547 2.9e-17 93.2 172 34.3
BcaC04g19111 Brassica carinata HOM05D004659 ORTHO05D005547 3.7e-17 92.8 197 31.5
BolC9t59202H Brassica oleracea HOM05D004659 ORTHO05D005547 3.7e-17 92.8 197 31.5
CARHR199930 Cardamine hirsuta HOM05D004659 ORTHO05D005547 3.7e-17 92.8 225 31.6
ATR0594G228 Amborella trichopoda HOM05D004659 ORTHO05D005547 4.9e-17 92.4 170 33.5
ClCG02G013790 Citrullus lanatus HOM05D004659 ORTHO05D005547 4.9e-17 92.4 181 33.7
Cc09_g02380 Coffea canephora HOM05D004659 ORTHO05D005547 4.9e-17 92.4 175 34.9
Sabra08G0032100 Salix brachista HOM05D004659 ORTHO05D005547 4.9e-17 92.4 204 30.4
AT5G13510 Arabidopsis thaliana HOM05D004659 ORTHO05D005547 6.4e-17 92.0 195 31.3
BcaNung01147 Brassica carinata HOM05D004659 ORTHO05D005547 6.4e-17 92.0 170 34.1
A10p24760 Brassica napus HOM05D004659 ORTHO05D005547 6.4e-17 92.0 172 33.7
C09p63590 Brassica napus HOM05D004659 ORTHO05D005547 6.4e-17 92.0 172 33.7
BraA10t44539Z Brassica rapa HOM05D004659 ORTHO05D005547 6.4e-17 92.0 172 33.7
Ciclev10032705m.g Citrus clementina HOM05D004659 ORTHO05D005547 6.4e-17 92.0 177 33.3
Nn2g10610 Nelumbo nucifera HOM05D004659 ORTHO05D005547 6.4e-17 92.0 167 34.1
AL6G24130 Arabidopsis lyrata HOM05D004659 ORTHO05D005547 8.3e-17 91.7 195 30.8
BolC2t06562H Brassica oleracea HOM05D004659 ORTHO05D005547 8.3e-17 91.7 170 34.1
BraA02t05172Z Brassica rapa HOM05D004659 ORTHO05D005547 1.1e-16 91.3 170 33.5
CSS0038055 Camellia sinensis var. sinensis HOM05D004659 ORTHO05D005547 1.1e-16 91.3 191 32.5
Carub.0006s1167 Capsella rubella HOM05D004659 ORTHO05D005547 1.1e-16 91.3 170 33.5
BcaNung01889 Brassica carinata HOM05D004659 ORTHO05D005547 1.4e-16 90.9 170 33.5
C02p06210 Brassica napus HOM05D004659 ORTHO05D005547 1.4e-16 90.9 170 33.5
Lalb_Chr07g0179691 Lupinus albus HOM05D004659 ORTHO05D005547 1.4e-16 90.9 170 34.1
Sc09g0006840 Simmondsia chinensis HOM05D004659 ORTHO05D005547 1.4e-16 90.9 192 32.8
Thhalv10014625m.g Eutrema salsugineum HOM05D004659 ORTHO05D005547 1.9e-16 90.5 170 33.5
Aa31sc127G30 Aethionema arabicum HOM05D004659 ORTHO05D005547 2.4e-16 90.1 194 30.9
MSTRG.9197 Avicennia marina HOM05D004659 ORTHO05D005547 3.2e-16 89.7 212 32.5
Nn8g38769 Nelumbo nucifera HOM05D004659 ORTHO05D005547 3.2e-16 89.7 167 34.7
Sp6g30510 Schrenkiella parvula HOM05D004659 ORTHO05D005547 3.2e-16 89.7 170 33.5
COL.COLO4_23776 Corchorus olitorius HOM05D004659 ORTHO05D005547 7.1e-16 88.6 179 32.4
PGR031G1734 Punica granatum HOM05D004659 ORTHO05D005547 7.1e-16 88.6 183 31.1
AagrBONN_evm.TU.Sc2ySwM_228.2422 Anthoceros agrestis HOM05D004659 ORTHO05D005547 1.2e-15 87.8 164 34.1
MBI05_g34749_MAGBIO Magnolia biondii HOM05D004659 ORTHO05D005547 1.6e-15 87.4 167 34.1
CBR_g32465 Chara braunii HOM05D004659 ORTHO05D005547 2.1e-15 87.0 166 30.7
PRCOL_00005567 Prasinoderma coloniale HOM05D004659 ORTHO05D005547 3.5e-15 86.3 161 35.4
TWI38G0010 Tripterygium wilfordii HOM05D004659 ORTHO05D005547 3.5e-15 86.3 192 30.7
unitig_46.g18586 Utricularia gibba HOM05D004659 ORTHO05D005547 1.3e-14 84.3 193 31.1
Duzib106G0066 Durio zibethinus HOM05D004659 ORTHO05D005547 1.7e-14 84.0 192 30.7
SGA_v2.0_scaffold62G21448 Striga asiatica HOM05D004659 ORTHO05D005547 1.7e-14 84.0 186 30.6
Zm00001eb397230 Zea mays HOM05D004659 ORTHO05D005547 3.0e-14 83.2 185 31.4
Zm00001eb013020 Zea mays HOM05D004659 ORTHO05D005547 6.6e-14 82.0 198 31.3
Os03g0284400 Oryza sativa ssp. japonica HOM05D004659 ORTHO05D005547 8.6e-14 81.6 167 31.7
Lalb_Chr13g0301081 Lupinus albus HOM05D004659 ORTHO05D005547 2.1e-12 77.0 170 32.4
Dinv31375 Davidia involucrata HOM05D004659 ORTHO05D005547 1.8e-11 73.9 108 38.9
SMO001G0016 Selaginella moellendorffii HOM05D004659 ORTHO05D005547 1.5e-10 70.9 162 31.5
TPR.G37110 Trifolium pratense HOM05D004659 ORTHO05D005547 3.7e-09 66.2 136 32.4
Aa31sc153G80 Aethionema arabicum HOM05D004659 ORTHO05D005547 6.4e-09 65.5 163 31.3
BraA05t22500Z Brassica rapa HOM05D004659 ORTHO05D005547 4.6e-07 59.3 141 31.9
CARHR086910 Cardamine hirsuta HOM05D004659 ORTHO05D005547 4.6e-07 59.3 161 30.4
BcaC09g48234 Brassica carinata HOM05D004659 ORTHO05D005547 1.3e-06 57.8 149 30.9
Glyma.13G155300 Glycine max HOM05D004659 ORTHO05D005547 8.6e-06 55.1 89 32.6


User provided reference genes

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