Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre06.g272400 Chlamydomonas reinhardtii HOM05D005542 ORTHO05D006708 8.4e-117 423.7 214 100.0
SHI12539 Sapria himalayana HOM05D005542 ORTHO05D006708 2.3e-21 106.7 201 38.8
Potri.006G130700 Populus trichocarpa HOM05D005542 ORTHO05D006708 4.3e-20 102.4 206 34.0
Manes.08G004100 Manihot esculenta HOM05D005542 ORTHO05D006708 5.6e-20 102.1 209 35.9
FAN14G1906 Fragaria x ananassa HOM05D005542 ORTHO05D006708 7.3e-20 101.7 188 37.2
FvH4_6g15490 Fragaria vesca HOM05D005542 ORTHO05D006708 1.2e-19 100.9 188 37.2
FAN09G2765 Fragaria x ananassa HOM05D005542 ORTHO05D006708 1.2e-19 100.9 188 37.2
Gorai.001G248000 Gossypium raimondii HOM05D005542 ORTHO05D006708 1.2e-19 100.9 200 35.0
Dinv35725 Davidia involucrata HOM05D005542 ORTHO05D006708 2.1e-19 100.1 187 33.7
Sabra06G0102700 Salix brachista HOM05D005542 ORTHO05D006708 2.1e-19 100.1 206 34.0
CANSAT80G0049 Cannabis sativa HOM05D005542 ORTHO05D006708 4.7e-19 99.0 187 33.7
RcHm_v2.0_Chr3g0468971 Rosa chinensis HOM05D005542 ORTHO05D006708 4.7e-19 99.0 187 35.3
SGA_v2.0_scaffold94G28671 Striga asiatica HOM05D005542 ORTHO05D006708 4.7e-19 99.0 208 36.5
FAN02G2564 Fragaria x ananassa HOM05D005542 ORTHO05D006708 8.1e-19 98.2 210 36.2
Potri.016G086700 Populus trichocarpa HOM05D005542 ORTHO05D006708 8.1e-19 98.2 206 34.5
Cfa017518 Carpinus fangiana HOM05D005542 ORTHO05D006708 1.4e-18 97.4 206 34.0
Manes.08G004101 Manihot esculenta HOM05D005542 ORTHO05D006708 1.4e-18 97.4 209 34.4
Manes.08G004113 Manihot esculenta HOM05D005542 ORTHO05D006708 1.4e-18 97.4 209 34.4
Manes.08G004123 Manihot esculenta HOM05D005542 ORTHO05D006708 1.4e-18 97.4 209 34.4
Manes.08G004124 Manihot esculenta HOM05D005542 ORTHO05D006708 1.4e-18 97.4 209 34.4
Manes.08G004129 Manihot esculenta HOM05D005542 ORTHO05D006708 1.4e-18 97.4 209 34.4
TAR623G0063 Trochodendron aralioides HOM05D005542 ORTHO05D006708 1.4e-18 97.4 206 34.5
Sabra16G0093000 Salix brachista HOM05D005542 ORTHO05D006708 1.8e-18 97.1 208 34.6
Psat6g070280 Pisum sativum HOM05D005542 ORTHO05D006708 2.3e-18 96.7 208 36.1
Cfa017517 Carpinus fangiana HOM05D005542 ORTHO05D006708 3.1e-18 96.3 206 34.0
MD12G1123000 Malus domestica HOM05D005542 ORTHO05D006708 3.1e-18 96.3 187 34.2
Haze_20632 Corylus avellana HOM05D005542 ORTHO05D006708 4.0e-18 95.9 206 34.0
Migut.L01666 Erythranthe guttata HOM05D005542 ORTHO05D006708 4.0e-18 95.9 206 34.0
FAN05G5506 Fragaria x ananassa HOM05D005542 ORTHO05D006708 4.0e-18 95.9 188 36.2
unitig_26.g9217 Utricularia gibba HOM05D005542 ORTHO05D006708 4.0e-18 95.9 190 38.4
HPP92_012051 Vanilla planifolia HOM05D005542 ORTHO05D006708 5.2e-18 95.5 208 35.6
Medtr1g066770 Medicago truncatula HOM05D005542 ORTHO05D006708 6.8e-18 95.1 208 36.5
MSTRG.10302 Avicennia marina HOM05D005542 ORTHO05D006708 8.9e-18 94.7 208 35.6
Cc06_g03660 Coffea canephora HOM05D005542 ORTHO05D006708 1.2e-17 94.4 212 35.4
Prupe.6G240200 Prunus persica HOM05D005542 ORTHO05D006708 1.2e-17 94.4 187 35.3
Sed0011219 Sechium edule HOM05D005542 ORTHO05D006708 1.2e-17 94.4 200 33.5
THA.LOC104816326 Tarenaya hassleriana HOM05D005542 ORTHO05D006708 1.5e-17 94.0 210 32.4
Mapoly0060s0060 Marchantia polymorpha HOM05D005542 ORTHO05D006708 3.4e-17 92.8 179 36.3
Aqoxy4G03224 Aquilegia oxysepala HOM05D005542 ORTHO05D006708 4.4e-17 92.4 206 33.0
CAN.G1676.11 Capsicum annuum HOM05D005542 ORTHO05D006708 4.4e-17 92.4 208 36.5
TPR.G30255 Trifolium pratense HOM05D005542 ORTHO05D006708 4.4e-17 92.4 211 35.1
MBI15_g16380_MAGBIO Magnolia biondii HOM05D005542 ORTHO05D006708 5.8e-17 92.0 185 34.6
Sed0012482 Sechium edule HOM05D005542 ORTHO05D006708 5.8e-17 92.0 200 34.0
THA.LOC104823241 Tarenaya hassleriana HOM05D005542 ORTHO05D006708 9.9e-17 91.3 207 34.3
TAR369G0130 Trochodendron aralioides HOM05D005542 ORTHO05D006708 9.9e-17 91.3 187 34.2
Ah.01g009250 Amaranthus hybridus HOM05D005542 ORTHO05D006708 1.3e-16 90.9 206 35.4
DCAR_009281 Daucus carota HOM05D005542 ORTHO05D006708 1.7e-16 90.5 209 33.5
Lj5g0010386 Lotus japonicus HOM05D005542 ORTHO05D006708 2.2e-16 90.1 212 33.5
Lj3P980T19 Lonicera japonica HOM05D005542 ORTHO05D006708 2.9e-16 89.7 202 33.2
Zm00001eb013250 Zea mays HOM05D005542 ORTHO05D006708 2.9e-16 89.7 208 33.7
VMungo1309G1614 Vigna mungo HOM05D005542 ORTHO05D006708 6.4e-16 88.6 201 34.3
BcaC06g32035 Brassica carinata HOM05D005542 ORTHO05D006708 8.4e-16 88.2 207 32.9
BolC9t60101H Brassica oleracea HOM05D005542 ORTHO05D006708 8.4e-16 88.2 207 32.9
BcaC03g13032 Brassica carinata HOM05D005542 ORTHO05D006708 1.4e-15 87.4 207 32.9
C09p73660 Brassica napus HOM05D005542 ORTHO05D006708 1.4e-15 87.4 207 32.9
BraA02t04743Z Brassica rapa HOM05D005542 ORTHO05D006708 1.4e-15 87.4 188 34.0
Hma1.2p1_0350F.1_g132800 Hydrangea macrophylla HOM05D005542 ORTHO05D006708 1.4e-15 87.4 187 33.2
AL6G12370 Arabidopsis lyrata HOM05D005542 ORTHO05D006708 1.9e-15 87.0 207 32.4
AT5G03080 Arabidopsis thaliana HOM05D005542 ORTHO05D006708 1.9e-15 87.0 207 32.4
Lsat_1_v5_gn_1_54060 Lactuca sativa HOM05D005542 ORTHO05D006708 1.9e-15 87.0 187 33.2
Carub.0006s0187 Capsella rubella HOM05D005542 ORTHO05D006708 2.4e-15 86.7 207 32.4
AUR62040036 Chenopodium quinoa HOM05D005542 ORTHO05D006708 2.4e-15 86.7 208 33.2
Dinv37264 Davidia involucrata HOM05D005542 ORTHO05D006708 2.4e-15 86.7 189 34.4
Aa31LG1G21960 Aethionema arabicum HOM05D005542 ORTHO05D006708 3.2e-15 86.3 185 33.5
ATR0314G039 Amborella trichopoda HOM05D005542 ORTHO05D006708 3.2e-15 86.3 210 33.3
AUR62042543 Chenopodium quinoa HOM05D005542 ORTHO05D006708 3.2e-15 86.3 208 33.2
C02p00780 Brassica napus HOM05D005542 ORTHO05D006708 4.1e-15 85.9 188 33.5
BolC2t06076H Brassica oleracea HOM05D005542 ORTHO05D006708 4.1e-15 85.9 188 33.5
CDE02G2407 Ceratophyllum demersum HOM05D000280 ORTHO05D000632 4.1e-15 85.9 161 37.9
PGR142G2113 Punica granatum HOM05D005542 ORTHO05D006708 4.1e-15 85.9 209 31.6
Os03g0288700 Oryza sativa ssp. japonica HOM05D005542 ORTHO05D006708 5.4e-15 85.5 187 35.3
Pp3c16_13170 Physcomitrium patens HOM05D005542 ORTHO05D006708 5.4e-15 85.5 189 32.3
Thhalv10014320m.g Eutrema salsugineum HOM05D005542 ORTHO05D006708 7.1e-15 85.1 207 32.4
BcaB05g21852 Brassica carinata HOM05D005542 ORTHO05D006708 9.2e-15 84.7 188 33.5
MSTRG.19142 Avicennia marina HOM05D005542 ORTHO05D006708 1.2e-14 84.3 199 32.2
Duzib128G1803 Durio zibethinus HOM05D005542 ORTHO05D006708 1.2e-14 84.3 206 32.5
Hma1.2p1_0111F.1_g053980 Hydrangea macrophylla HOM05D005542 ORTHO05D006708 1.2e-14 84.3 187 32.6
Lsat_1_v5_gn_6_30080 Lactuca sativa HOM05D005542 ORTHO05D006708 1.6e-14 84.0 201 32.8
HanXRQChr13g0399571 Helianthus annuus HOM05D005542 ORTHO05D006708 2.1e-14 83.6 199 32.7
COL.COLO4_27064 Corchorus olitorius HOM05D005542 ORTHO05D006708 2.7e-14 83.2 158 36.7
SMO367G0756 Selaginella moellendorffii HOM05D005542 ORTHO05D006708 3.5e-14 82.8 188 31.9
Thecc.05G055500 Theobroma cacao HOM05D005542 ORTHO05D006708 3.5e-14 82.8 206 32.0
Pp3c5_750 Physcomitrium patens HOM05D005542 ORTHO05D006708 4.6e-14 82.4 159 35.2
SEGI_14044 Sequoiadendron giganteum HOM05D005542 ORTHO05D006708 4.6e-14 82.4 187 31.6
Gohir.D13G095800 Gossypium hirsutum HOM05D005542 ORTHO05D006708 1.0e-13 81.3 204 31.4
Actinidia19704 Actinidia chinensis HOM05D005542 ORTHO05D006708 1.3e-13 80.9 159 34.6
CARHR210250 Cardamine hirsuta HOM05D005542 ORTHO05D006708 1.3e-13 80.9 188 32.4
ClCG02G023990 Citrullus lanatus HOM05D005542 ORTHO05D006708 1.3e-13 80.9 198 30.8
MD04G1105500 Malus domestica HOM05D005542 ORTHO05D006708 1.7e-13 80.5 190 30.0
BcaNung06917 Brassica carinata HOM05D005542 ORTHO05D006708 2.3e-13 80.1 205 32.2
Nn2g10693 Nelumbo nucifera HOM05D005542 ORTHO05D006708 2.3e-13 80.1 193 31.6
Nn2g10694 Nelumbo nucifera HOM05D005542 ORTHO05D006708 2.3e-13 80.1 193 31.6
SalBow3G3282 Salvia bowleyana HOM05D005542 ORTHO05D006708 3.0e-13 79.7 203 35.0
SalBow3G3389 Salvia bowleyana HOM05D005542 ORTHO05D006708 3.0e-13 79.7 203 35.0
Gohir.A13G082150 Gossypium hirsutum HOM05D005542 ORTHO05D006708 5.1e-13 79.0 200 31.5
Eucgr.K03216 Eucalyptus grandis HOM05D005542 ORTHO05D006708 6.6e-13 78.6 206 31.6
CsaV3_4G023360 Cucumis sativus L. HOM05D005542 ORTHO05D006708 8.6e-13 78.2 198 29.8
CiPaw.10G136900 Carya illinoinensis HOM05D005542 ORTHO05D006708 1.1e-12 77.8 213 31.0
COL.COLO4_27065 Corchorus olitorius HOM05D005542 ORTHO05D006708 1.1e-12 77.8 155 32.3
Ciclev10012685m.g Citrus clementina HOM05D005542 ORTHO05D006708 1.5e-12 77.4 187 29.9
MELO3C014679.2 Cucumis melo HOM05D005542 ORTHO05D006708 1.9e-12 77.0 199 31.2
CSS0011727 Camellia sinensis var. sinensis HOM05D005542 ORTHO05D006708 2.5e-12 76.6 206 33.0
CiPaw.09G179200 Carya illinoinensis HOM05D005542 ORTHO05D006708 2.5e-12 76.6 211 30.8
Oeu060090.1 Olea europaea HOM05D005542 ORTHO05D006708 2.5e-12 76.6 198 30.8
QL07p045114 Quercus lobata HOM05D005542 ORTHO05D006708 3.3e-12 76.3 205 29.8
Glyma.13G137800 Glycine max HOM05D005542 ORTHO05D006708 5.6e-12 75.5 188 31.9
Lalb_Chr21g0314711 Lupinus albus HOM05D005542 ORTHO05D006708 9.6e-12 74.7 187 30.5
Oeu029419.1 Olea europaea HOM05D005542 ORTHO05D006708 9.6e-12 74.7 161 34.8
CSS0028203 Camellia sinensis var. sinensis HOM05D005542 ORTHO05D006708 1.2e-11 74.3 206 32.5
Sc02g0001930 Simmondsia chinensis HOM05D005542 ORTHO05D006708 1.2e-11 74.3 209 33.0
HanXRQChr11g0350001 Helianthus annuus HOM05D005542 ORTHO05D006708 1.6e-11 73.9 199 28.1
Solyc09g007450.3 Solanum lycopersicum HOM05D005542 ORTHO05D006708 1.6e-11 73.9 199 30.7
Sopen09g002330 Solanum pennellii HOM05D005542 ORTHO05D006708 2.8e-11 73.2 204 30.9
Phvul.007G164600 Phaseolus vulgaris HOM05D005542 ORTHO05D006708 4.7e-11 72.4 201 30.8
PGR004G0770 Punica granatum HOM05D005542 ORTHO05D006708 6.2e-11 72.0 140 39.3
Glyma.10G050300 Glycine max HOM05D005542 ORTHO05D006708 1.4e-10 70.9 186 30.6
Gohir.A04G076100 Gossypium hirsutum HOM05D005542 ORTHO05D006708 1.8e-10 70.5 168 32.1
Cpa.g.sc174.15 Carica papaya HOM05D005542 ORTHO05D006708 2.4e-10 70.1 212 29.7
PSO063G7551 Papaver somniferum HOM05D005542 ORTHO05D006708 2.4e-10 70.1 189 30.7
PSO339G3338 Papaver somniferum HOM05D005542 ORTHO05D006708 2.4e-10 70.1 189 30.7
A10p32790 Brassica napus HOM05D005542 ORTHO05D006708 4.0e-10 69.3 207 29.5
BraA10t45313Z Brassica rapa HOM05D005542 ORTHO05D006708 4.0e-10 69.3 207 29.5
Sp6g39610 Schrenkiella parvula HOM05D005542 ORTHO05D006708 4.0e-10 69.3 207 29.5
HanXRQChr13g0399561 Helianthus annuus HOM05D005542 ORTHO05D006708 8.9e-10 68.2 187 30.5
EL10Ac7g16508 Beta vulgaris HOM05D005542 ORTHO05D006708 1.5e-09 67.4 163 34.4
Nitab4.5_0000669g0160 Nicotiana tabacum HOM05D005542 ORTHO05D006708 2.0e-09 67.0 208 32.2
Atru.chr5.2634 Acer truncatum HOM05D005542 ORTHO05D006708 1.3e-08 64.3 113 38.1
MD04G1102900 Malus domestica HOM05D005542 ORTHO05D006708 6.4e-08 62.0 113 36.3
Ca_11456_v3 Cicer arietinum L. HOM05D005542 ORTHO05D006708 1.1e-07 61.2 132 35.6
Peaxi162Scf00005g04018 Petunia axillaris HOM05D005542 ORTHO05D006708 1.1e-07 61.2 106 34.0
BolC9t60096H Brassica oleracea HOM05D005542 ORTHO05D006708 1.9e-07 60.5 138 32.6


User provided reference genes

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