Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre06.g267850 Chlamydomonas reinhardtii HOM05D002799 ORTHO05D007076 2.9e-242 842.0 629 100.0
PRCOL_00006278 Prasinoderma coloniale HOM05D002799 ORTHO05D007076 3.2e-55 220.7 334 39.5
CBR_g26239 Chara braunii HOM05D002799 ORTHO05D007076 2.6e-41 174.5 334 35.0
AagrBONN_evm.TU.Sc2ySwM_368.1885 Anthoceros agrestis HOM05D002799 ORTHO05D007076 8.4e-40 169.5 348 35.3
Mapoly0041s0072 Marchantia polymorpha HOM05D002799 ORTHO05D007076 1.3e-37 162.2 331 33.2
Pp3c5_23880 Physcomitrium patens HOM05D002799 ORTHO05D007076 1.7e-37 161.8 197 44.2
Pp3c3_18900 Physcomitrium patens HOM05D002799 ORTHO05D007076 6.6e-37 159.8 374 32.1
AL3G42700 Arabidopsis lyrata HOM05D002799 ORTHO05D007076 4.0e-34 150.6 198 40.4
ATR0829G228 Amborella trichopoda HOM05D002799 ORTHO05D007076 5.3e-34 150.2 181 43.1
CsaV3_4G004510 Cucumis sativus L. HOM05D002799 ORTHO05D007076 6.9e-34 149.8 180 44.4
CSS0010295 Camellia sinensis var. sinensis HOM05D002799 ORTHO05D007076 1.2e-33 149.1 340 31.8
vmacro06500 Vaccinium macrocarpon HOM05D002799 ORTHO05D007076 1.2e-33 149.1 180 43.9
CAN.G289.47 Capsicum annuum HOM05D002799 ORTHO05D007076 1.5e-33 148.7 342 30.1
ECA233G3743 Erigeron canadensis HOM05D002799 ORTHO05D007076 2.0e-33 148.3 188 41.5
AT2G04940 Arabidopsis thaliana HOM05D002799 ORTHO05D007076 2.6e-33 147.9 198 39.9
Eucgr.K00095 Eucalyptus grandis HOM05D002799 ORTHO05D007076 2.6e-33 147.9 197 41.1
EL10Ac3g05098 Beta vulgaris HOM05D002799 ORTHO05D007076 3.4e-33 147.5 197 40.6
MD01G1233700 Malus domestica HOM05D002799 ORTHO05D007076 3.4e-33 147.5 180 44.4
Atru.chr12.2008 Acer truncatum HOM05D002799 ORTHO05D007076 4.5e-33 147.1 197 41.1
MBI04_g21139_MAGBIO Magnolia biondii HOM05D002799 ORTHO05D007076 4.5e-33 147.1 181 42.5
Carub.0003s2662 Capsella rubella HOM05D002799 ORTHO05D007076 7.6e-33 146.4 198 39.9
COL.COLO4_24619 Corchorus olitorius HOM05D002799 ORTHO05D007076 7.6e-33 146.4 180 42.8
Solyc03g006460.4 Solanum lycopersicum HOM05D002799 ORTHO05D007076 7.6e-33 146.4 343 29.7
BcaC01g03181 Brassica carinata HOM05D002799 ORTHO05D007076 9.9e-33 146.0 198 39.4
A03p44540 Brassica napus HOM05D002799 ORTHO05D007076 9.9e-33 146.0 198 39.4
C03p55340 Brassica napus HOM05D002799 ORTHO05D007076 9.9e-33 146.0 198 39.4
BolC3t17806H Brassica oleracea HOM05D002799 ORTHO05D007076 9.9e-33 146.0 198 39.4
BraA03t13587Z Brassica rapa HOM05D002799 ORTHO05D007076 9.9e-33 146.0 198 39.4
FvH4_7g33590 Fragaria vesca HOM05D002799 ORTHO05D007076 9.9e-33 146.0 198 40.4
FAN03G1078 Fragaria x ananassa HOM05D002799 ORTHO05D007076 9.9e-33 146.0 198 40.9
SalBow5G5430 Salvia bowleyana HOM05D002799 ORTHO05D007076 9.9e-33 146.0 197 40.6
Sed0006194 Sechium edule HOM05D002799 ORTHO05D007076 9.9e-33 146.0 197 41.1
BcaB08g34494 Brassica carinata HOM05D002799 ORTHO05D007076 1.3e-32 145.6 198 39.4
CARHR102970 Cardamine hirsuta HOM05D002799 ORTHO05D007076 1.3e-32 145.6 198 39.9
Gohir.A09G055000 Gossypium hirsutum HOM05D002799 ORTHO05D007076 1.3e-32 145.6 180 43.3
PSO782G0547 Papaver somniferum HOM05D002799 ORTHO05D007076 1.3e-32 145.6 194 40.7
RcHm_v2.0_Chr1g0383851 Rosa chinensis HOM05D002799 ORTHO05D007076 1.3e-32 145.6 201 40.3
Sopen03g002460 Solanum pennellii HOM05D002799 ORTHO05D007076 1.3e-32 145.6 343 29.7
MSTRG.11401 Avicennia marina HOM05D002799 ORTHO05D007076 1.7e-32 145.2 197 40.6
Lalb_Chr03g0024441 Lupinus albus HOM05D002799 ORTHO05D007076 1.7e-32 145.2 181 42.5
Sp3g23560 Schrenkiella parvula HOM05D002799 ORTHO05D007076 1.7e-32 145.2 198 38.4
Thecc.08G172500 Theobroma cacao HOM05D002799 ORTHO05D007076 1.7e-32 145.2 180 42.8
Actinidia08737 Actinidia chinensis HOM05D002799 ORTHO05D007076 2.2e-32 144.8 198 40.4
CDE01G0680 Ceratophyllum demersum HOM05D000526 ORTHO05D000956 2.2e-32 144.8 182 42.3
AUR62028151 Chenopodium quinoa HOM05D002799 ORTHO05D007076 2.2e-32 144.8 197 39.1
Cc03_g15080 Coffea canephora HOM05D002799 ORTHO05D007076 2.2e-32 144.8 197 41.6
TAR374G0973 Trochodendron aralioides HOM05D002799 ORTHO05D007076 2.2e-32 144.8 200 40.5
Prupe.2G323900 Prunus persica HOM05D002799 ORTHO05D007076 2.9e-32 144.4 180 43.3
GSVIVG01024449001 Vitis vinifera HOM05D002799 ORTHO05D007076 2.9e-32 144.4 197 40.6
CANSAT21G1863 Cannabis sativa HOM05D002799 ORTHO05D007076 4.9e-32 143.7 180 41.7
Dinv17267 Davidia involucrata HOM05D002799 ORTHO05D007076 4.9e-32 143.7 198 40.4
FAN01G1859 Fragaria x ananassa HOM05D002799 ORTHO05D007076 4.9e-32 143.7 181 43.1
Duzib211G0014 Durio zibethinus HOM05D002799 ORTHO05D007076 6.4e-32 143.3 180 42.8
Ah.13g072670 Amaranthus hybridus HOM05D002799 ORTHO05D007076 8.4e-32 142.9 197 40.1
Ciclev10001355m.g Citrus clementina HOM05D002799 ORTHO05D007076 8.4e-32 142.9 182 42.3
QL09p025824 Quercus lobata HOM05D002799 ORTHO05D007076 8.4e-32 142.9 322 31.7
Aa31LG3G2760 Aethionema arabicum HOM05D002799 ORTHO05D007076 1.1e-31 142.5 181 40.3
FAN10G0267 Fragaria x ananassa HOM05D002799 ORTHO05D007076 1.1e-31 142.5 198 39.9
FAN10G3482 Fragaria x ananassa HOM05D002799 ORTHO05D007076 1.1e-31 142.5 198 39.9
Potri.015G079500 Populus trichocarpa HOM05D002799 ORTHO05D007076 1.1e-31 142.5 204 39.2
Thhalv10002559m.g Eutrema salsugineum HOM05D002799 ORTHO05D007076 1.9e-31 141.7 198 38.4
Lsat_1_v5_gn_8_3761 Lactuca sativa HOM05D002799 ORTHO05D007076 1.9e-31 141.7 192 41.1
PSO063G7569 Papaver somniferum HOM05D002799 ORTHO05D007076 1.9e-31 141.7 180 42.2
Gorai.006G053300 Gossypium raimondii HOM05D002799 ORTHO05D007076 2.4e-31 141.4 181 43.1
Medtr4g077510 Medicago truncatula HOM05D002799 ORTHO05D007076 2.4e-31 141.4 197 39.6
HPP92_015127 Vanilla planifolia HOM05D002799 ORTHO05D007076 2.4e-31 141.4 179 41.3
Ca_04931_v3 Cicer arietinum L. HOM05D002799 ORTHO05D007076 3.2e-31 141.0 197 39.1
Ca_29855_v3 Cicer arietinum L. HOM05D002799 ORTHO05D007076 3.2e-31 141.0 197 39.1
Gohir.D09G053900 Gossypium hirsutum HOM05D002799 ORTHO05D007076 5.4e-31 140.2 180 42.2
CiPaw.05G237100 Carya illinoinensis HOM05D002799 ORTHO05D007076 7.1e-31 139.8 180 41.1
arahy.Tifrunner.gnm1.ann1.IZ2599 Arachis hypogaea HOM05D002799 ORTHO05D007076 9.3e-31 139.4 204 38.2
arahy.Tifrunner.gnm1.ann1.ZMX436 Arachis hypogaea HOM05D002799 ORTHO05D007076 9.3e-31 139.4 204 38.2
DCAR_009002 Daucus carota HOM05D002799 ORTHO05D007076 1.2e-30 139.0 195 39.5
HanXRQChr04g0105251 Helianthus annuus HOM05D002799 ORTHO05D007076 1.2e-30 139.0 180 41.1
TWI34G0554 Tripterygium wilfordii HOM05D002799 ORTHO05D007076 1.2e-30 139.0 178 42.1
Lj3g0008833 Lotus japonicus HOM05D002799 ORTHO05D007076 1.6e-30 138.7 199 39.2
Manes.08G164400 Manihot esculenta HOM05D002799 ORTHO05D007076 4.6e-30 137.1 197 39.6
Aqoxy3G02040 Aquilegia oxysepala HOM05D002799 ORTHO05D007076 7.9e-30 136.3 180 41.1
Lj1C1032G6 Lonicera japonica HOM05D002799 ORTHO05D007076 7.9e-30 136.3 195 40.5
PGSC0003DMG400012810 Solanum tuberosum HOM05D002799 ORTHO05D007076 7.9e-30 136.3 351 29.1
VMungo1127G2112 Vigna mungo HOM05D002799 ORTHO05D007076 7.9e-30 136.3 180 41.1
Zm00001eb430250 Zea mays HOM05D002799 ORTHO05D007076 1.0e-29 136.0 186 39.2
SMO196G0267 Selaginella moellendorffii HOM05D002799 ORTHO05D007076 1.3e-29 135.6 151 47.7
Phvul.011G021500 Phaseolus vulgaris HOM05D002799 ORTHO05D007076 5.1e-29 133.7 181 39.8
Glyma.12G019100 Glycine max HOM05D002799 ORTHO05D007076 1.9e-28 131.7 180 40.0
THA.LOC104815357 Tarenaya hassleriana HOM05D002799 ORTHO05D007076 3.3e-28 131.0 197 38.1
Nn1g02009 Nelumbo nucifera HOM05D002799 ORTHO05D007076 4.3e-28 130.6 200 40.0
Os04g0599400 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D007076 5.6e-28 130.2 192 37.0
Os02g0238500 Oryza sativa ssp. japonica HOM05D002799 ORTHO05D007076 1.3e-27 129.0 186 36.6
Hma1.2p1_0758F.1_g213600 Hydrangea macrophylla HOM05D002799 ORTHO05D007076 2.1e-27 128.3 197 39.1
Migut.I00118 Erythranthe guttata HOM05D002799 ORTHO05D007076 1.1e-26 125.9 197 36.5
PGR004G1694 Punica granatum HOM05D002799 ORTHO05D007076 5.3e-26 123.6 180 38.9
Solyc03g006452.1 Solanum lycopersicum HOM05D002799 ORTHO05D007076 9.0e-26 122.9 318 28.9
MELO3C017614.2 Cucumis melo HOM05D002799 ORTHO05D007076 1.5e-25 122.1 208 36.5
AUR62005914 Chenopodium quinoa HOM05D002799 ORTHO05D007076 2.6e-25 121.3 197 36.0
MD07G1305800 Malus domestica HOM05D002799 ORTHO05D007076 4.5e-25 120.6 180 38.9
Hund09770 Selenicereus undatus HOM05D002799 ORTHO05D007076 4.5e-25 120.6 223 34.1
Cpa.g.sc67.53 Carica papaya HOM05D002799 ORTHO05D007076 1.3e-24 119.0 121 50.4
ClCG07G017310 Citrullus lanatus HOM05D002799 ORTHO05D007076 2.4e-23 114.8 181 36.5
Oeu014983.2 Olea europaea HOM05D002799 ORTHO05D007076 2.7e-22 111.3 238 31.5
Zm00001eb071960 Zea mays HOM05D002799 ORTHO05D007076 2.7e-22 111.3 135 42.2
Actinidia34299 Actinidia chinensis HOM05D002799 ORTHO05D007076 7.9e-22 109.8 121 49.6
Lj2A621G40 Lonicera japonica HOM05D002799 ORTHO05D007076 7.9e-22 109.8 185 36.2
Sc13g0010800 Simmondsia chinensis HOM05D002799 ORTHO05D007076 1.0e-21 109.4 192 33.9
Psat7g171360 Pisum sativum HOM05D002799 ORTHO05D007076 2.1e-19 101.7 196 32.7
Cfa023729 Carpinus fangiana HOM05D002799 ORTHO05D007076 3.7e-19 100.9 252 28.2
Lj3A801T16 Lonicera japonica HOM05D002799 ORTHO05D007076 4.9e-16 90.5 187 32.6
FvH4_7g33592 Fragaria vesca HOM05D002799 ORTHO05D007076 1.9e-15 88.6 73 53.4
unitig_62.g23564 Utricularia gibba HOM05D002799 ORTHO05D007076 3.2e-15 87.8 197 31.0
Cfa015896 Carpinus fangiana HOM05D002799 ORTHO05D007076 2.4e-10 71.6 177 32.8
SEGI_10035 Sequoiadendron giganteum HOM05D002799 ORTHO05D007076 2.4e-10 71.6 67 49.3
Sabra15G0103800 Salix brachista HOM05D002799 ORTHO05D007076 4.2e-07 60.8 66 47.0
Sabra15G0103700 Salix brachista HOM05D002799 ORTHO05D007076 5.5e-07 60.5 204 25.0
FvH4_7g33593 Fragaria vesca HOM05D002799 ORTHO05D007076 7.2e-07 60.1 115 33.0
TPR.G19958 Trifolium pratense HOM05D002799 ORTHO05D007076 9.4e-07 59.7 64 45.3
Peaxi162Scf00195g01110 Petunia axillaris HOM05D002799 ORTHO05D007076 2.1e-06 58.5 52 53.8


User provided reference genes

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