Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre06.g261750 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 0.0e+00 1141.7 669 100.0
Cre16.g662600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 6.1e-73 279.6 318 45.0
Cre16.g663450 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 2.3e-72 277.7 317 45.7
Cre16.g663400 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.7e-70 271.6 318 44.7
Cre11.g474700 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 7.5e-63 246.1 317 40.4
Cre06.g277650 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.7e-62 245.0 315 41.9
AagrBONN_evm.TU.Sc2ySwM_344.3805 Anthoceros agrestis HOM05D003942 ORTHO05D004527 9.8e-55 219.2 349 36.1
Pp3c6_24250 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.3e-54 218.8 294 40.1
Mapoly0009s0131 Marchantia polymorpha HOM05D003942 ORTHO05D004527 4.9e-54 216.9 307 40.4
CBR_g44610 Chara braunii HOM05D000505 ORTHO05D000301 2.0e-52 211.5 309 37.2
Pp3c1_3670 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.0e-52 211.5 293 40.3
Pp3c1_34600 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.1e-50 205.7 298 39.3
Pp3c11_9440 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.5e-50 204.5 294 39.1
Pp3c2_13700 Physcomitrium patens HOM05D003942 ORTHO05D004527 5.6e-50 203.4 307 37.8
AagrBONN_evm.TU.Sc2ySwM_362.1957 Anthoceros agrestis HOM05D003942 ORTHO05D004527 2.1e-49 201.4 285 39.3
Pp3c1_34560 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.1e-48 199.1 293 38.9
unitig_8.g3394 Utricularia gibba HOM05D003942 ORTHO05D004527 8.9e-48 196.1 328 33.8
AagrBONN_evm.TU.Sc2ySwM_228.958 Anthoceros agrestis HOM05D003942 ORTHO05D004527 1.5e-47 195.3 316 36.4
Prupe.2G168100 Prunus persica HOM05D003942 ORTHO05D004527 2.0e-47 194.9 309 34.0
Migut.N01440 Erythranthe guttata HOM05D003942 ORTHO05D004527 3.4e-47 194.1 329 32.2
MD01G1057600 Malus domestica HOM05D003942 ORTHO05D004527 5.8e-47 193.4 326 32.8
Phvul.010G097300 Phaseolus vulgaris HOM05D003942 ORTHO05D004527 1.3e-46 192.2 368 31.5
Pp3c4_15850 Physcomitrium patens HOM05D003942 ORTHO05D004527 6.4e-46 189.9 301 34.6
Manes.05G036000 Manihot esculenta HOM05D003942 ORTHO05D004527 1.4e-45 188.7 312 32.4
VMungo0331G0006 Vigna mungo HOM05D003942 ORTHO05D004527 2.4e-45 188.0 368 31.0
PGSC0003DMG400021644 Solanum tuberosum HOM05D003942 ORTHO05D004527 4.1e-45 187.2 317 30.9
AUR62022550 Chenopodium quinoa HOM05D003942 ORTHO05D004527 5.4e-45 186.8 304 32.2
Pp3c3_22870 Physcomitrium patens HOM05D003942 ORTHO05D004527 7.0e-45 186.4 305 32.1
Duzib133G0298 Durio zibethinus HOM05D003942 ORTHO05D004527 1.6e-44 185.3 320 31.2
Eucgr.E00157 Eucalyptus grandis HOM05D003942 ORTHO05D004527 2.1e-44 184.9 329 30.7
SGA_v2.0_scaffold43G16422 Striga asiatica HOM05D003942 ORTHO05D004527 2.1e-44 184.9 320 31.6
COL.COLO4_12700 Corchorus olitorius HOM05D003942 ORTHO05D004527 2.7e-44 184.5 310 31.6
SalBow5G2271 Salvia bowleyana HOM05D003942 ORTHO05D004527 2.7e-44 184.5 364 29.1
MD07G1139000 Malus domestica HOM05D003942 ORTHO05D004527 3.5e-44 184.1 323 31.9
AUR62004344 Chenopodium quinoa HOM05D003942 ORTHO05D004527 6.0e-44 183.3 318 31.1
Lalb_Chr04g0256871 Lupinus albus HOM05D003942 ORTHO05D004527 6.0e-44 183.3 329 30.4
QL08p049021 Quercus lobata HOM05D003942 ORTHO05D004527 1.0e-43 182.6 310 31.6
FAN03G2475 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.3e-43 182.2 309 33.3
Glyma.03G010800 Glycine max HOM05D003942 ORTHO05D004527 1.3e-43 182.2 356 30.3
PRCOL_00004040 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.3e-43 182.2 317 36.9
SMO364G0338 Selaginella moellendorffii HOM05D003942 ORTHO05D004527 1.3e-43 182.2 292 34.9
SEGI_25793 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 1.7e-43 181.8 311 32.8
Actinidia10022 Actinidia chinensis HOM05D003942 ORTHO05D004527 2.3e-43 181.4 329 29.5
Solyc05g049900.3 Solanum lycopersicum HOM05D003942 ORTHO05D004527 2.3e-43 181.4 317 29.7
Sopen05g028240 Solanum pennellii HOM05D003942 ORTHO05D004527 2.3e-43 181.4 317 29.7
TWI23G1005 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 2.3e-43 181.4 314 32.8
Gorai.007G098800 Gossypium raimondii HOM05D003942 ORTHO05D004527 3.0e-43 181.0 326 31.3
Lj3g0006137 Lotus japonicus HOM05D003942 ORTHO05D004527 3.0e-43 181.0 326 31.6
CiPaw.02G030000 Carya illinoinensis HOM05D003942 ORTHO05D004527 5.1e-43 180.3 326 29.8
Lsat_1_v5_gn_4_36221 Lactuca sativa HOM05D003942 ORTHO05D004527 5.1e-43 180.3 314 31.5
CANSAT56G2580 Cannabis sativa HOM05D003942 ORTHO05D004527 8.6e-43 179.5 318 30.2
TWI59G0555 Tripterygium wilfordii HOM05D003942 ORTHO05D004527 8.6e-43 179.5 310 31.6
Glyma.07G071900 Glycine max HOM05D003942 ORTHO05D004527 1.5e-42 178.7 308 32.8
Gohir.A11G088200 Gossypium hirsutum HOM05D003942 ORTHO05D004527 1.5e-42 178.7 318 31.1
CAN.G399.13 Capsicum annuum HOM05D003942 ORTHO05D004527 1.9e-42 178.3 327 29.4
ECA240G2096 Erigeron canadensis HOM05D003942 ORTHO05D004527 2.5e-42 177.9 305 31.8
FAN01G0250 Fragaria x ananassa HOM05D003942 ORTHO05D004527 2.5e-42 177.9 309 32.7
Thecc.01G360500 Theobroma cacao HOM05D003942 ORTHO05D004527 2.5e-42 177.9 302 31.8
Ca_23643_v3 Cicer arietinum L. HOM05D003942 ORTHO05D004527 4.3e-42 177.2 331 30.2
HanXRQChr13g0426521 Helianthus annuus HOM05D003942 ORTHO05D004527 4.3e-42 177.2 310 31.3
RcHm_v2.0_Chr1g0355071 Rosa chinensis HOM05D003942 ORTHO05D004527 5.6e-42 176.8 309 32.4
Hund27285 Selenicereus undatus HOM05D003942 ORTHO05D004527 5.6e-42 176.8 346 29.8
FAN10G4090 Fragaria x ananassa HOM05D003942 ORTHO05D004527 7.3e-42 176.4 309 32.4
Oeu020562.1 Olea europaea HOM05D003942 ORTHO05D004527 7.3e-42 176.4 323 30.0
Aa31LG1G27300 Aethionema arabicum HOM05D003942 ORTHO05D004527 1.2e-41 175.6 320 30.0
Cfa003938 Carpinus fangiana HOM05D003942 ORTHO05D004527 1.2e-41 175.6 311 29.6
Cre01.g038100 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 1.2e-41 175.6 342 32.2
DCAR_015969 Daucus carota HOM05D003942 ORTHO05D004527 1.2e-41 175.6 340 29.7
Zm00001eb000510 Zea mays HOM05D003942 ORTHO05D004527 1.2e-41 175.6 327 32.7
Ah.05g180690 Amaranthus hybridus HOM05D003942 ORTHO05D004527 1.6e-41 175.3 293 32.1
BcaC02g07065 Brassica carinata HOM05D003942 ORTHO05D004527 1.6e-41 175.3 318 29.2
TPR.G15979 Trifolium pratense HOM05D003942 ORTHO05D004527 1.6e-41 175.3 328 29.9
MSTRG.4859 Avicennia marina HOM05D003942 ORTHO05D004527 2.1e-41 174.9 325 29.5
CiPaw.01G059900 Carya illinoinensis HOM05D003942 ORTHO05D004527 2.1e-41 174.9 310 30.6
Cre07.g355300 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 2.1e-41 174.9 304 34.9
FAN06G3470 Fragaria x ananassa HOM05D003942 ORTHO05D004527 2.1e-41 174.9 309 32.0
Nitab4.5_0008050g0040 Nicotiana tabacum HOM05D003942 ORTHO05D004527 2.1e-41 174.9 317 29.0
Cpa.g.sc18.243 Carica papaya HOM05D003942 ORTHO05D004527 2.8e-41 174.5 314 30.6
Peaxi162Scf00191g01422 Petunia axillaris HOM05D003942 ORTHO05D004527 2.8e-41 174.5 327 29.7
FvH4_7g14170 Fragaria vesca HOM05D003942 ORTHO05D004527 3.6e-41 174.1 309 32.0
FAN06G2309 Fragaria x ananassa HOM05D003942 ORTHO05D004527 3.6e-41 174.1 309 32.0
Lsat_1_v5_gn_3_137060 Lactuca sativa HOM05D003942 ORTHO05D004527 3.6e-41 174.1 300 32.0
Pp3c14_6660 Physcomitrium patens HOM05D003942 ORTHO05D004527 3.6e-41 174.1 271 35.1
BraA04t18872Z Brassica rapa HOM05D003942 ORTHO05D004527 6.2e-41 173.3 313 30.4
HanXRQChr16g0522811 Helianthus annuus HOM05D003942 ORTHO05D004527 6.2e-41 173.3 311 31.5
SEGI_35716 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 6.2e-41 173.3 317 33.4
arahy.Tifrunner.gnm1.ann1.Q5YAPI Arachis hypogaea HOM05D003942 ORTHO05D004527 8.1e-41 172.9 321 31.5
arahy.Tifrunner.gnm1.ann1.2H0UDK Arachis hypogaea HOM05D003942 ORTHO05D004527 1.1e-40 172.6 321 31.5
Ciclev10020374m.g Citrus clementina HOM05D003942 ORTHO05D004527 1.1e-40 172.6 318 29.6
PGR042G2566 Punica granatum HOM05D003942 ORTHO05D004527 1.1e-40 172.6 311 30.2
Sabra14G0060100 Salix brachista HOM05D003942 ORTHO05D004527 1.1e-40 172.6 300 30.3
Rhsim07G0016400 Rhododendron simsii HOM05D003942 ORTHO05D004527 1.4e-40 172.2 324 30.2
GSVIVG01026895001 Vitis vinifera HOM05D003942 ORTHO05D004527 1.4e-40 172.2 312 30.4
Aa31LG10G15570 Aethionema arabicum HOM05D003942 ORTHO05D004527 1.8e-40 171.8 313 30.4
A09p53400 Brassica napus HOM05D003942 ORTHO05D004527 1.8e-40 171.8 316 30.4
C04p71910 Brassica napus HOM05D003942 ORTHO05D004527 1.8e-40 171.8 313 29.7
BolC4t28689H Brassica oleracea HOM05D003942 ORTHO05D004527 1.8e-40 171.8 313 29.7
Lalb_Chr03g0038211 Lupinus albus HOM05D003942 ORTHO05D004527 1.8e-40 171.8 326 30.1
THA.LOC104817290 Tarenaya hassleriana HOM05D003942 ORTHO05D004527 3.1e-40 171.0 315 29.2
Mapoly0071s0037 Marchantia polymorpha HOM05D003942 ORTHO05D004527 4.0e-40 170.6 314 31.5
Atru.chr5.464 Acer truncatum HOM05D003942 ORTHO05D004527 5.2e-40 170.2 315 29.5
AL4G45080 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 5.2e-40 170.2 296 31.1
Dinv32469 Davidia involucrata HOM05D003942 ORTHO05D004527 5.2e-40 170.2 309 29.8
Thhalv10001467m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 5.2e-40 170.2 313 29.4
MBI18_g25515_MAGBIO Magnolia biondii HOM05D003942 ORTHO05D004527 5.2e-40 170.2 311 31.5
TAR629G1832 Trochodendron aralioides HOM05D003942 ORTHO05D004527 5.2e-40 170.2 292 32.2
BraA09t40766Z Brassica rapa HOM05D003942 ORTHO05D004527 6.8e-40 169.9 316 30.4
Sp4g27940 Schrenkiella parvula HOM05D003942 ORTHO05D004527 6.8e-40 169.9 313 29.4
Nitab4.5_0001702g0090 Nicotiana tabacum HOM05D003942 ORTHO05D004527 8.9e-40 169.5 320 28.8
AL5G43590 Arabidopsis lyrata HOM05D003942 ORTHO05D004527 1.2e-39 169.1 316 30.4
C08p36210 Brassica napus HOM05D003942 ORTHO05D004527 1.2e-39 169.1 313 29.1
BolC8t51203H Brassica oleracea HOM05D003942 ORTHO05D004527 1.2e-39 169.1 313 29.1
CARHR141140 Cardamine hirsuta HOM05D003942 ORTHO05D004527 1.2e-39 169.1 310 29.4
Medtr8g031000 Medicago truncatula HOM05D003942 ORTHO05D004527 1.5e-39 168.7 331 29.3
CDE09G0298 Ceratophyllum demersum HOM05D003942 ORTHO05D004527 2.0e-39 168.3 307 30.3
A04p34110 Brassica napus HOM05D003942 ORTHO05D004527 2.6e-39 167.9 313 30.0
Os03g0106000 Oryza sativa ssp. japonica HOM05D003942 ORTHO05D004527 2.6e-39 167.9 292 33.6
Cre03.g199600 Chlamydomonas reinhardtii HOM05D003942 ORTHO05D004527 4.4e-39 167.2 225 38.7
Thhalv10006010m.g Eutrema salsugineum HOM05D003942 ORTHO05D004527 4.4e-39 167.2 313 29.7
Carub.0005s2799 Capsella rubella HOM05D003942 ORTHO05D004527 7.5e-39 166.4 316 30.1
Psat4g154400 Pisum sativum HOM05D003942 ORTHO05D004527 7.5e-39 166.4 331 28.1
CBR_g772 Chara braunii HOM05D003942 ORTHO05D004527 9.9e-39 166.0 333 30.0
Carub.0004s2857 Capsella rubella HOM05D003942 ORTHO05D004527 1.3e-38 165.6 308 29.5
EL10Ac1g00428 Beta vulgaris HOM05D003942 ORTHO05D004527 1.7e-38 165.2 299 29.8
BcaC07g40631 Brassica carinata HOM05D003942 ORTHO05D004527 1.7e-38 165.2 316 30.1
C04p31390 Brassica napus HOM05D003942 ORTHO05D004527 2.2e-38 164.9 316 30.4
BolC4t24688H Brassica oleracea HOM05D003942 ORTHO05D004527 2.2e-38 164.9 313 29.1
PRCOL_00003548 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 2.2e-38 164.9 328 34.8
CSS0049620 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 2.9e-38 164.5 309 28.8
Potri.014G082900 Populus trichocarpa HOM05D003942 ORTHO05D004527 2.9e-38 164.5 300 29.0
A04p01160 Brassica napus HOM05D003942 ORTHO05D004527 3.7e-38 164.1 316 30.1
BraA04t15833Z Brassica rapa HOM05D003942 ORTHO05D004527 3.7e-38 164.1 316 30.1
CSS0041241 Camellia sinensis var. sinensis HOM05D003942 ORTHO05D004527 3.7e-38 164.1 309 28.8
Sp5g02060 Schrenkiella parvula HOM05D003942 ORTHO05D004527 4.9e-38 163.7 316 29.7
Lj9A582T85 Lonicera japonica HOM05D003942 ORTHO05D004527 6.4e-38 163.3 282 32.3
PRCOL_00006054 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 1.9e-37 161.8 306 34.0
BcaC02g10219 Brassica carinata HOM05D003942 ORTHO05D004527 2.4e-37 161.4 308 31.2
Cc02_g37870 Coffea canephora HOM05D003942 ORTHO05D004527 2.4e-37 161.4 327 28.1
HPP92_006558 Vanilla planifolia HOM05D003942 ORTHO05D004527 2.4e-37 161.4 329 28.3
TAR375G0209 Trochodendron aralioides HOM05D003942 ORTHO05D004527 3.2e-37 161.0 292 29.8
BcaC09g52244 Brassica carinata HOM05D003942 ORTHO05D004527 7.1e-37 159.8 316 30.1
Sc23g0002980 Simmondsia chinensis HOM05D003942 ORTHO05D004527 2.7e-36 157.9 310 30.3
Haze_15488 Corylus avellana HOM05D003942 ORTHO05D004527 1.3e-35 155.6 388 27.3
Aqoxy5G04009 Aquilegia oxysepala HOM05D003942 ORTHO05D004527 1.7e-35 155.2 318 30.2
ECA234G1137 Erigeron canadensis HOM05D003942 ORTHO05D004527 1.9e-34 151.8 271 31.0
MCO09G357 Micromonas commoda HOM05D003942 ORTHO05D004527 1.2e-33 149.1 348 29.6
AT2G45870 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 2.8e-33 147.9 279 29.7
PRCOL_00005764 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 3.6e-33 147.5 317 34.4
PRCOL_00004398 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 4.9e-30 137.1 315 33.0
PRCOL_00003097 Prasinoderma coloniale HOM05D003942 ORTHO05D004527 5.4e-29 133.7 298 31.9
MCO01G232 Micromonas commoda HOM05D003942 ORTHO05D004527 2.5e-26 124.8 309 28.5
MCO01G007 Micromonas commoda HOM05D003942 ORTHO05D004527 1.6e-20 105.5 297 26.3
AagrBONN_evm.TU.Sc2ySwM_228.2628 Anthoceros agrestis HOM05D003942 ORTHO05D004527 2.3e-19 101.7 154 33.1
CBR_g38187 Chara braunii HOM05D003942 ORTHO05D004527 1.5e-18 99.0 210 31.9
Gohir.D11G092500 Gossypium hirsutum HOM05D003942 ORTHO05D004527 2.5e-18 98.2 210 28.1
Pp3c11_6680 Physcomitrium patens HOM05D003942 ORTHO05D004527 2.5e-18 98.2 103 44.7
HPP92_011356 Vanilla planifolia HOM05D003942 ORTHO05D004527 2.5e-18 98.2 180 27.2
Nn1g01512 Nelumbo nucifera HOM05D003942 ORTHO05D004527 3.3e-18 97.8 233 27.0
Duzib138G1448 Durio zibethinus HOM05D003942 ORTHO05D004527 4.8e-17 94.0 202 28.2
AT3G61320 Arabidopsis thaliana HOM05D003942 ORTHO05D004527 6.9e-16 90.1 204 28.9
ATR0680G085 Amborella trichopoda HOM05D003942 ORTHO05D004527 1.7e-14 85.5 190 28.4
Pp3c6_17920 Physcomitrium patens HOM05D003942 ORTHO05D004527 1.1e-13 82.8 154 33.1
FAN10G2852 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.4e-13 82.4 157 35.0
Oeu020563.1 Olea europaea HOM05D003942 ORTHO05D004527 2.1e-12 78.6 147 32.0
C05p09980 Brassica napus HOM05D003942 ORTHO05D004527 6.0e-12 77.0 123 35.0
CARHR171630 Cardamine hirsuta HOM05D003942 ORTHO05D004527 3.9e-11 74.3 129 32.6
MCO08G244 Micromonas commoda HOM05D037687 ORTHO05D049127 8.7e-11 73.2 236 24.2
HPP92_011355 Vanilla planifolia HOM05D003942 ORTHO05D004527 1.1e-10 72.8 115 35.7
SEGI_34263 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 2.5e-10 71.6 120 38.3
MD01G1202300 Malus domestica HOM05D003942 ORTHO05D004527 3.7e-09 67.8 208 25.0
FAN10G0144 Fragaria x ananassa HOM05D003942 ORTHO05D004527 1.8e-08 65.5 120 35.8
PRCOL_00004736 Prasinoderma coloniale HOM05D037687 ORTHO05D049127 2.0e-07 62.0 222 26.1
Pp3c3_14710 Physcomitrium patens HOM05D003942 ORTHO05D004527 7.6e-07 60.1 45 62.2
vmacro13277 Vaccinium macrocarpon HOM05D003942 ORTHO05D004527 7.6e-07 60.1 343 18.4
SEGI_01331 Sequoiadendron giganteum HOM05D003942 ORTHO05D004527 9.9e-07 59.7 70 38.6


User provided reference genes

Program Settings