Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre06.g261650 Chlamydomonas reinhardtii HOM05D004325 ORTHO05D005470 2.1e-95 352.4 192 100.0
MCO08G322 Micromonas commoda HOM05D004325 ORTHO05D005470 2.9e-36 156.0 165 47.9
PRCOL_00000812 Prasinoderma coloniale HOM05D004325 ORTHO05D005470 4.0e-33 145.6 176 41.5
Mapoly0057s0039 Marchantia polymorpha HOM05D004325 ORTHO05D005470 2.7e-29 132.9 179 43.0
SMO116G0307 Selaginella moellendorffii HOM05D004325 ORTHO05D005470 3.5e-29 132.5 184 40.2
SEGI_09014 Sequoiadendron giganteum HOM05D004325 ORTHO05D005470 4.5e-29 132.1 184 39.7
Manes.03G206300 Manihot esculenta HOM05D004325 ORTHO05D005470 2.2e-28 129.8 185 38.9
unitig_0.g2580 Utricularia gibba HOM05D004325 ORTHO05D005470 6.5e-28 128.3 185 37.8
arahy.Tifrunner.gnm1.ann1.NK7FC1 Arachis hypogaea HOM05D004325 ORTHO05D005470 1.1e-27 127.5 179 38.5
MD13G1150800 Malus domestica HOM05D004325 ORTHO05D005470 1.1e-27 127.5 195 40.5
RcHm_v2.0_Chr4g0425791 Rosa chinensis HOM05D004325 ORTHO05D005470 1.1e-27 127.5 189 38.6
Rhsim02G0002800 Rhododendron simsii HOM05D004325 ORTHO05D005470 1.5e-27 127.1 179 39.1
Dinv44270 Davidia involucrata HOM05D004325 ORTHO05D005470 2.5e-27 126.3 178 38.8
Migut.N00036 Erythranthe guttata HOM05D004325 ORTHO05D005470 2.5e-27 126.3 185 37.3
TPR.G30807 Trifolium pratense HOM05D004325 ORTHO05D005470 2.5e-27 126.3 179 39.1
HanXRQChr17g0569361 Helianthus annuus HOM05D004325 ORTHO05D005470 3.2e-27 125.9 190 38.4
Nitab4.5_0000647g0250 Nicotiana tabacum HOM05D004325 ORTHO05D005470 3.2e-27 125.9 163 40.5
Thecc.04G303800 Theobroma cacao HOM05D004325 ORTHO05D005470 3.2e-27 125.9 184 38.6
arahy.Tifrunner.gnm1.ann1.H88EK8 Arachis hypogaea HOM05D004325 ORTHO05D005470 4.2e-27 125.6 179 38.5
arahy.Tifrunner.gnm1.ann1.RG9184 Arachis hypogaea HOM05D004325 ORTHO05D005470 4.2e-27 125.6 179 38.5
Glyma.09G034400 Glycine max HOM05D004325 ORTHO05D005470 4.2e-27 125.6 179 39.7
Potri.010G147600 Populus trichocarpa HOM05D004325 ORTHO05D005470 4.2e-27 125.6 184 35.9
CSS0027180 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 5.5e-27 125.2 179 40.2
Nitab4.5_0004165g0020 Nicotiana tabacum HOM05D004325 ORTHO05D005470 5.5e-27 125.2 163 40.5
Peaxi162Scf00228g00059 Petunia axillaris HOM05D004325 ORTHO05D005470 5.5e-27 125.2 179 37.4
ATR0693G272 Amborella trichopoda HOM05D004325 ORTHO05D005470 7.2e-27 124.8 177 39.0
CANSAT78G0850 Cannabis sativa HOM05D004325 ORTHO05D005470 7.2e-27 124.8 185 36.8
Haze_01324 Corylus avellana HOM05D004325 ORTHO05D005470 7.2e-27 124.8 178 38.2
ECA233G2476 Erigeron canadensis HOM05D004325 ORTHO05D005470 7.2e-27 124.8 190 36.8
Lj6g0013793 Lotus japonicus HOM05D004325 ORTHO05D005470 7.2e-27 124.8 179 38.0
Phvul.006G119000 Phaseolus vulgaris HOM05D004325 ORTHO05D005470 7.2e-27 124.8 163 39.9
FvH4_4g20250 Fragaria vesca HOM05D004325 ORTHO05D005470 9.4e-27 124.4 183 38.8
MBI19_g03261_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 9.4e-27 124.4 163 39.3
MD16G1151300 Malus domestica HOM05D004325 ORTHO05D005470 9.4e-27 124.4 195 40.0
Sabra08G0078100 Salix brachista HOM05D004325 ORTHO05D005470 9.4e-27 124.4 185 35.7
COL.COLO4_34588 Corchorus olitorius HOM05D004325 ORTHO05D005470 1.2e-26 124.0 184 37.0
Solyc05g053390.4 Solanum lycopersicum HOM05D004325 ORTHO05D005470 1.2e-26 124.0 184 39.1
Ca_00969_v3 Cicer arietinum L. HOM05D004325 ORTHO05D005470 1.6e-26 123.6 179 38.0
Duzib151G0878 Durio zibethinus HOM05D004325 ORTHO05D005470 1.6e-26 123.6 184 37.0
Potri.008G103400 Populus trichocarpa HOM05D004325 ORTHO05D005470 1.6e-26 123.6 189 34.4
Prupe.1G115000 Prunus persica HOM05D004325 ORTHO05D005470 1.6e-26 123.6 191 39.3
Actinidia13352 Actinidia chinensis HOM05D004325 ORTHO05D005470 2.1e-26 123.2 184 39.7
Cfa015290 Carpinus fangiana HOM05D004325 ORTHO05D005470 2.1e-26 123.2 184 38.0
Psat1g162400 Pisum sativum HOM05D004325 ORTHO05D005470 2.1e-26 123.2 179 39.1
CARHR287830 Cardamine hirsuta HOM05D004325 ORTHO05D005470 2.7e-26 122.9 181 37.6
Eucgr.D01575 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.7e-26 122.9 179 38.5
Eucgr.E02007 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.7e-26 122.9 179 38.0
Medtr2g033830 Medicago truncatula HOM05D004325 ORTHO05D005470 2.7e-26 122.9 184 39.1
PGSC0003DMG400027209 Solanum tuberosum HOM05D004325 ORTHO05D005470 2.7e-26 122.9 184 38.6
TAR362G0217 Trochodendron aralioides HOM05D004325 ORTHO05D005470 2.7e-26 122.9 179 39.1
Gohir.A01G034900 Gossypium hirsutum HOM05D004325 ORTHO05D005470 3.6e-26 122.5 180 37.8
Lsat_1_v5_gn_1_117981 Lactuca sativa HOM05D004325 ORTHO05D005470 3.6e-26 122.5 182 39.0
Lalb_Chr12g0200831 Lupinus albus HOM05D004325 ORTHO05D005470 3.6e-26 122.5 184 37.5
THA.LOC104827099 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 3.6e-26 122.5 163 39.3
Hma1.2p1_0013F.1_g008360 Hydrangea macrophylla HOM05D004325 ORTHO05D005470 4.7e-26 122.1 180 38.3
Sp2g19810 Schrenkiella parvula HOM05D004325 ORTHO05D005470 4.7e-26 122.1 180 38.3
SpUn0021_0040 Schrenkiella parvula HOM05D004325 ORTHO05D005470 4.7e-26 122.1 180 38.3
Sc25g0003210 Simmondsia chinensis HOM05D004325 ORTHO05D005470 4.7e-26 122.1 193 36.8
Sopen05g031900 Solanum pennellii HOM05D004325 ORTHO05D005470 4.7e-26 122.1 184 38.6
Duzib052G1161 Durio zibethinus HOM05D004325 ORTHO05D005470 6.1e-26 121.7 184 37.0
AagrBONN_evm.TU.Sc2ySwM_344.4436 Anthoceros agrestis HOM05D004325 ORTHO05D005470 8.0e-26 121.3 179 37.4
Cpa.g.sc9.38 Carica papaya HOM05D004325 ORTHO05D005470 8.0e-26 121.3 179 36.3
Cc03_g00680 Coffea canephora HOM05D004325 ORTHO05D005470 8.0e-26 121.3 184 38.0
CsaV3_3G015280 Cucumis sativus L. HOM05D004325 ORTHO05D005470 8.0e-26 121.3 186 38.2
PSO832G3679 Papaver somniferum HOM05D004325 ORTHO05D005470 1.0e-25 120.9 184 38.0
VMungo0540G0568 Vigna mungo HOM05D004325 ORTHO05D005470 1.0e-25 120.9 184 37.0
BraA09t36122Z Brassica rapa HOM05D004325 ORTHO05D005470 1.4e-25 120.6 181 37.6
MSTRG.24825 Avicennia marina HOM05D004325 ORTHO05D005470 1.8e-25 120.2 170 35.9
BcaC04g23736 Brassica carinata HOM05D004325 ORTHO05D005470 1.8e-25 120.2 181 37.6
A06p38330 Brassica napus HOM05D004325 ORTHO05D005470 1.8e-25 120.2 180 37.8
C07p39920 Brassica napus HOM05D004325 ORTHO05D005470 1.8e-25 120.2 180 37.8
C09p05230 Brassica napus HOM05D004325 ORTHO05D005470 1.8e-25 120.2 181 37.6
BolC7t44524H Brassica oleracea HOM05D004325 ORTHO05D005470 1.8e-25 120.2 180 37.8
BraA06t26747Z Brassica rapa HOM05D004325 ORTHO05D005470 1.8e-25 120.2 180 37.8
Ciclev10005911m.g Citrus clementina HOM05D004325 ORTHO05D005470 1.8e-25 120.2 188 37.8
Haze_26161 Corylus avellana HOM05D004325 ORTHO05D005470 1.8e-25 120.2 166 38.0
Thhalv10004957m.g Eutrema salsugineum HOM05D004325 ORTHO05D005470 1.8e-25 120.2 180 38.3
Sed0024233 Sechium edule HOM05D004325 ORTHO05D005470 1.8e-25 120.2 186 38.7
Carub.0008s0936 Capsella rubella HOM05D004325 ORTHO05D005470 2.3e-25 119.8 180 37.8
Gohir.D01G023556 Gossypium hirsutum HOM05D004325 ORTHO05D005470 2.3e-25 119.8 180 37.8
Gorai.002G030800 Gossypium raimondii HOM05D004325 ORTHO05D005470 2.3e-25 119.8 180 37.8
BcaB04g19615 Brassica carinata HOM05D004325 ORTHO05D005470 3.0e-25 119.4 184 38.0
A09p04850 Brassica napus HOM05D004325 ORTHO05D005470 4.0e-25 119.0 181 37.6
PSO063G1209 Papaver somniferum HOM05D004325 ORTHO05D005470 4.0e-25 119.0 184 38.0
PGR004G2019 Punica granatum HOM05D004325 ORTHO05D005470 4.0e-25 119.0 179 38.5
Hund03133 Selenicereus undatus HOM05D004325 ORTHO05D005470 4.0e-25 119.0 162 38.3
CSS0047955 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 5.2e-25 118.6 163 38.0
Atru.chr4.3046 Acer truncatum HOM05D004325 ORTHO05D005470 8.8e-25 117.9 184 35.3
AT5G49510 Arabidopsis thaliana HOM05D004325 ORTHO05D005470 8.8e-25 117.9 180 37.8
CDE01G0033 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 8.8e-25 117.9 174 37.4
Glyma.15G139100 Glycine max HOM05D004325 ORTHO05D005470 8.8e-25 117.9 184 35.9
PSO421G0271 Papaver somniferum HOM05D004325 ORTHO05D005470 8.8e-25 117.9 184 39.1
AUR62016229 Chenopodium quinoa HOM05D004325 ORTHO05D005470 1.5e-24 117.1 164 37.2
AL8G23260 Arabidopsis lyrata HOM05D004325 ORTHO05D005470 2.0e-24 116.7 180 37.2
SGA_v2.0_scaffold528G52737 Striga asiatica HOM05D004325 ORTHO05D005470 2.0e-24 116.7 200 37.0
Nitab4.5_0000891g0010 Nicotiana tabacum HOM05D004325 ORTHO05D005470 2.6e-24 116.3 178 36.5
TWI73G0086 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 2.6e-24 116.3 179 36.9
TAR633G1272 Trochodendron aralioides HOM05D004325 ORTHO05D005470 2.6e-24 116.3 178 36.5
Zm00001eb136920 Zea mays HOM05D004325 ORTHO05D005470 2.6e-24 116.3 179 37.4
Nitab4.5_0000177g0050 Nicotiana tabacum HOM05D004325 ORTHO05D005470 3.4e-24 115.9 178 36.5
Pp3c8_18130 Physcomitrium patens HOM05D004325 ORTHO05D005470 3.4e-24 115.9 177 39.0
Zm00001eb028520 Zea mays HOM05D004325 ORTHO05D005470 3.4e-24 115.9 179 38.0
Os12g0562900 Oryza sativa ssp. japonica HOM05D004325 ORTHO05D005470 4.4e-24 115.5 163 38.0
ClCG05G006650 Citrullus lanatus HOM05D004325 ORTHO05D005470 5.7e-24 115.2 186 36.6
PSO724G0368 Papaver somniferum HOM05D004325 ORTHO05D005470 7.5e-24 114.8 184 38.0
AUR62039261 Chenopodium quinoa HOM05D004325 ORTHO05D005470 9.8e-24 114.4 179 36.9
Hund11985 Selenicereus undatus HOM05D004325 ORTHO05D005470 9.8e-24 114.4 173 35.3
HPP92_027563 Vanilla planifolia HOM05D004325 ORTHO05D005470 9.8e-24 114.4 190 37.4
Ah.13g071390 Amaranthus hybridus HOM05D004325 ORTHO05D005470 2.2e-23 113.2 181 37.6
Sed0016650 Sechium edule HOM05D004325 ORTHO05D005470 3.7e-23 112.5 187 37.4
THA.LOC104802708 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 3.7e-23 112.5 179 36.3
Aa31LG11G8140 Aethionema arabicum HOM05D004325 ORTHO05D005470 6.3e-23 111.7 190 37.4
Aqoxy3G01635 Aquilegia oxysepala HOM05D004325 ORTHO05D005470 3.1e-22 109.4 178 37.1
vmacro15176 Vaccinium macrocarpon HOM05D004325 ORTHO05D005470 4.1e-22 109.0 221 32.1
CAN.G945.3 Capsicum annuum HOM05D004325 ORTHO05D005470 5.4e-22 108.6 132 40.9
Lj3A833G34 Lonicera japonica HOM05D004325 ORTHO05D005470 5.4e-22 108.6 153 36.6
FAN12G3971 Fragaria x ananassa HOM05D004325 ORTHO05D005470 1.2e-21 107.5 216 32.9
TPR.G28959 Trifolium pratense HOM05D004325 ORTHO05D005470 1.0e-20 104.4 132 39.4
FAN07G0536 Fragaria x ananassa HOM05D004325 ORTHO05D005470 1.7e-20 103.6 225 31.6
Sabra10G0113800 Salix brachista HOM05D004325 ORTHO05D005470 2.3e-20 103.2 228 28.5
CiPaw.01G136700 Carya illinoinensis HOM05D004325 ORTHO05D005470 5.0e-20 102.1 117 43.6
SalBow5G2618 Salvia bowleyana HOM05D004325 ORTHO05D005470 5.0e-20 102.1 163 35.6
Nn3g21742 Nelumbo nucifera HOM05D004325 ORTHO05D005470 1.1e-19 100.9 178 36.0
Oeu001162.1 Olea europaea HOM05D004325 ORTHO05D005470 4.2e-19 99.0 117 41.0
GSVIVG01034969001 Vitis vinifera HOM05D004325 ORTHO05D005470 4.2e-19 99.0 117 41.0
EL10Ac3g05527 Beta vulgaris HOM05D004325 ORTHO05D005470 7.2e-19 98.2 164 35.4
Eucgr.E01982 Eucalyptus grandis HOM05D004325 ORTHO05D005470 3.6e-18 95.9 120 41.7
BolC9t53449H Brassica oleracea HOM05D004325 ORTHO05D005470 3.0e-17 92.8 241 28.2
TWI09G1034 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 5.2e-17 92.0 179 34.1
Eucgr.E01999 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.2e-16 90.9 179 34.1
Lalb_Chr13g0298551 Lupinus albus HOM05D004325 ORTHO05D005470 5.7e-16 88.6 117 39.3
Eucgr.D01586 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.3e-15 87.4 101 41.6
MELO3C006723.2 Cucumis melo HOM05D004325 ORTHO05D005470 3.7e-15 85.9 145 36.6
Sopen01g024490 Solanum pennellii HOM05D004325 ORTHO05D005470 8.3e-15 84.7 103 41.7
CDE12G0495 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 1.4e-14 84.0 126 37.3
CBR_g12436 Chara braunii HOM05D004325 ORTHO05D005470 1.4e-14 84.0 85 43.5
QL06p012738 Quercus lobata HOM05D004325 ORTHO05D005470 1.8e-14 83.6 87 44.8
HPP92_017247 Vanilla planifolia HOM05D004325 ORTHO05D005470 2.4e-14 83.2 124 38.7
MSTRG.3849 Avicennia marina HOM05D004325 ORTHO05D005470 1.7e-12 77.0 126 36.5
Eucgr.D01580 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.7e-12 77.0 87 41.4
Eucgr.D01581 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.7e-12 77.0 92 39.1
Eucgr.D01598 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.5e-11 73.9 101 38.6
Actinidia18462 Actinidia chinensis HOM05D004325 ORTHO05D005470 2.3e-09 66.6 115 34.8
Glyma.07G238200 Glycine max HOM05D004325 ORTHO05D005470 3.1e-09 66.2 74 44.6
CiPaw.02G073600 Carya illinoinensis HOM05D004325 ORTHO05D005470 6.8e-09 65.1 205 24.9
Dinv15146 Davidia involucrata HOM05D004325 ORTHO05D005470 6.4e-07 58.5 103 32.0
Eucgr.D01577 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.4e-06 57.4 90 32.2
HPP92_017255 Vanilla planifolia HOM05D004325 ORTHO05D005470 1.4e-06 57.4 100 35.0


User provided reference genes

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