Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre06.g261300 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 4.5e-172 608.2 400 100.0
Cre17.g722500 Chlamydomonas reinhardtii HOM05D004637 ORTHO05D005320 7.2e-21 105.9 192 34.9
CBR_g8228 Chara braunii HOM05D004637 ORTHO05D005320 1.7e-17 94.7 201 35.3
CBR_g40794 Chara braunii HOM05D004637 ORTHO05D005320 4.1e-16 90.1 201 33.8
MD15G1077400 Malus domestica HOM05D004637 ORTHO05D005320 7.0e-16 89.4 204 31.9
QL02p003978 Quercus lobata HOM05D004637 ORTHO05D005320 1.6e-15 88.2 202 31.2
PSO170G3952 Papaver somniferum HOM05D004637 ORTHO05D005320 2.0e-15 87.8 200 31.0
Phvul.001G024600 Phaseolus vulgaris HOM05D004637 ORTHO05D005320 2.0e-15 87.8 203 34.0
TAR628G0069 Trochodendron aralioides HOM05D004637 ORTHO05D005320 2.7e-15 87.4 170 32.4
Lj5g0011390 Lotus japonicus HOM05D004637 ORTHO05D005320 3.5e-15 87.0 202 33.2
MD08G1093700 Malus domestica HOM05D004637 ORTHO05D005320 3.5e-15 87.0 202 31.2
VMungo0647G2267 Vigna mungo HOM05D004637 ORTHO05D005320 3.5e-15 87.0 170 32.9
PSO210G5934 Papaver somniferum HOM05D004637 ORTHO05D005320 4.5e-15 86.7 196 32.1
TAR628G0193 Trochodendron aralioides HOM05D004637 ORTHO05D005320 4.5e-15 86.7 170 32.4
HPP92_003482 Vanilla planifolia HOM05D004637 ORTHO05D005320 4.5e-15 86.7 204 32.8
SMO365G0080 Selaginella moellendorffii HOM05D004637 ORTHO05D005320 5.9e-15 86.3 195 28.7
Atru.chr13.748 Acer truncatum HOM05D004637 ORTHO05D005320 1.0e-14 85.5 199 33.7
C02p12470 Brassica napus HOM05D004637 ORTHO05D005320 1.0e-14 85.5 203 32.5
CARHR285840 Cardamine hirsuta HOM05D004637 ORTHO05D005320 1.0e-14 85.5 203 30.5
Pp3c3_8350 Physcomitrium patens HOM05D004637 ORTHO05D005320 1.0e-14 85.5 195 30.8
Migut.N02728 Erythranthe guttata HOM05D004637 ORTHO05D005320 1.3e-14 85.1 198 30.3
Zm00001eb104960 Zea mays HOM05D004637 ORTHO05D005320 1.3e-14 85.1 179 33.0
CiPaw.15G052200 Carya illinoinensis HOM05D004637 ORTHO05D005320 1.7e-14 84.7 202 32.2
Os07g0479200 Oryza sativa ssp. japonica HOM05D004637 ORTHO05D005320 1.7e-14 84.7 198 30.3
SEGI_04928 Sequoiadendron giganteum HOM05D004637 ORTHO05D005320 1.7e-14 84.7 195 32.3
Actinidia08272 Actinidia chinensis HOM05D004637 ORTHO05D005320 2.3e-14 84.3 195 30.3
Dinv39271 Davidia involucrata HOM05D004637 ORTHO05D005320 2.3e-14 84.3 199 32.7
BcaC03g14011 Brassica carinata HOM05D004637 ORTHO05D005320 2.9e-14 84.0 203 32.0
BolC2t07347H Brassica oleracea HOM05D004637 ORTHO05D005320 2.9e-14 84.0 203 32.0
CANSAT54G2334 Cannabis sativa HOM05D004637 ORTHO05D005320 2.9e-14 84.0 196 32.7
TWI56G1297 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 2.9e-14 84.0 195 30.8
TAR381G1093 Trochodendron aralioides HOM05D004637 ORTHO05D005320 3.8e-14 83.6 198 31.8
Actinidia38079 Actinidia chinensis HOM05D004637 ORTHO05D005320 5.0e-14 83.2 188 31.4
CSS0035210 Camellia sinensis var. sinensis HOM05D004637 ORTHO05D005320 5.0e-14 83.2 204 35.8
Gohir.A05G205600 Gossypium hirsutum HOM05D004637 ORTHO05D005320 5.0e-14 83.2 202 34.2
Manes.05G177100 Manihot esculenta HOM05D004637 ORTHO05D005320 5.0e-14 83.2 203 33.5
Sabra14G0016200 Salix brachista HOM05D004637 ORTHO05D005320 6.6e-14 82.8 170 32.9
BraA02t05792Z Brassica rapa HOM05D004637 ORTHO05D005320 8.6e-14 82.4 203 31.0
Nn5g30394 Nelumbo nucifera HOM05D004637 ORTHO05D005320 8.6e-14 82.4 195 29.7
A02p07110 Brassica napus HOM05D004637 ORTHO05D005320 1.1e-13 82.0 203 32.0
FvH4_2g33730 Fragaria vesca HOM05D004637 ORTHO05D005320 1.1e-13 82.0 202 30.7
Gohir.D05G208900 Gossypium hirsutum HOM05D004637 ORTHO05D005320 1.1e-13 82.0 195 30.8
Potri.014G023800 Populus trichocarpa HOM05D004637 ORTHO05D005320 1.1e-13 82.0 195 30.3
PGR031G3707 Punica granatum HOM05D004637 ORTHO05D005320 1.1e-13 82.0 197 33.0
GSVIVG01009436001 Vitis vinifera HOM05D004637 ORTHO05D005320 1.1e-13 82.0 196 32.1
Ciclev10002344m.g Citrus clementina HOM05D004637 ORTHO05D005320 1.5e-13 81.6 204 31.4
TWI36G0292 Tripterygium wilfordii HOM05D004637 ORTHO05D005320 1.9e-13 81.3 195 28.7
BcaB01g02883 Brassica carinata HOM05D004637 ORTHO05D005320 3.3e-13 80.5 204 31.9
Eucgr.F00183 Eucalyptus grandis HOM05D004637 ORTHO05D005320 3.3e-13 80.5 195 29.7
Thhalv10015267m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 3.3e-13 80.5 203 29.6
Glyma.17G238800 Glycine max HOM05D004637 ORTHO05D005320 3.3e-13 80.5 202 31.2
Prupe.1G430800 Prunus persica HOM05D004637 ORTHO05D005320 3.3e-13 80.5 196 32.1
BcaB05g22509 Brassica carinata HOM05D004637 ORTHO05D005320 4.3e-13 80.1 196 32.1
Glyma.14G085900 Glycine max HOM05D004637 ORTHO05D005320 4.3e-13 80.1 202 31.2
Gorai.009G215300 Gossypium raimondii HOM05D004637 ORTHO05D005320 4.3e-13 80.1 197 33.0
Mapoly0040s0013 Marchantia polymorpha HOM05D004637 ORTHO05D005320 4.3e-13 80.1 199 31.2
PRCOL_00005305 Prasinoderma coloniale HOM05D004637 ORTHO05D005320 4.3e-13 80.1 168 36.9
Sp6g10610 Schrenkiella parvula HOM05D004637 ORTHO05D005320 4.3e-13 80.1 209 31.6
CDE01G0812 Ceratophyllum demersum HOM05D004637 ORTHO05D005320 5.6e-13 79.7 195 29.7
Pp3c4_22670 Physcomitrium patens HOM05D004637 ORTHO05D005320 5.6e-13 79.7 194 29.9
Thecc.08G001300 Theobroma cacao HOM05D004637 ORTHO05D005320 5.6e-13 79.7 203 31.0
MSTRG.25070 Avicennia marina HOM05D004637 ORTHO05D005320 7.3e-13 79.3 196 31.6
A03p27890 Brassica napus HOM05D004637 ORTHO05D005320 7.3e-13 79.3 204 31.4
BraA03t12001Z Brassica rapa HOM05D004637 ORTHO05D005320 7.3e-13 79.3 204 31.4
Hma1.2p1_0360F.1_g135900 Hydrangea macrophylla HOM05D004637 ORTHO05D005320 7.3e-13 79.3 195 29.7
Sed0017846 Sechium edule HOM05D004637 ORTHO05D005320 7.3e-13 79.3 199 30.7
TPR.G3787 Trifolium pratense HOM05D004637 ORTHO05D005320 7.3e-13 79.3 198 29.3
Dinv35927 Davidia involucrata HOM05D004637 ORTHO05D005320 9.5e-13 79.0 195 29.7
Aqoxy5G01163 Aquilegia oxysepala HOM05D004637 ORTHO05D005320 1.2e-12 78.6 170 31.8
PGSC0003DMG400015434 Solanum tuberosum HOM05D004637 ORTHO05D005320 1.2e-12 78.6 196 31.6
AL8G35940 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 2.1e-12 77.8 203 29.6
Oeu045704.1 Olea europaea HOM05D004637 ORTHO05D005320 2.1e-12 77.8 170 30.6
THA.LOC104824981 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 2.1e-12 77.8 201 29.9
BcaC01g04795 Brassica carinata HOM05D004637 ORTHO05D005320 2.8e-12 77.4 204 30.9
C03p33670 Brassica napus HOM05D004637 ORTHO05D005320 2.8e-12 77.4 204 30.9
BolC3t15687H Brassica oleracea HOM05D004637 ORTHO05D005320 2.8e-12 77.4 204 30.9
Sopen12g030560 Solanum pennellii HOM05D004637 ORTHO05D005320 2.8e-12 77.4 196 31.1
CARHR288440 Cardamine hirsuta HOM05D004637 ORTHO05D005320 3.6e-12 77.0 195 30.3
Aa31LG8G3140 Aethionema arabicum HOM05D004637 ORTHO05D005320 4.7e-12 76.6 211 31.8
HPP92_026880 Vanilla planifolia HOM05D004637 ORTHO05D005320 4.7e-12 76.6 182 33.0
MELO3C010837.2 Cucumis melo HOM05D004637 ORTHO05D005320 6.1e-12 76.3 201 30.8
CsaV3_2G026470 Cucumis sativus L. HOM05D004637 ORTHO05D005320 6.1e-12 76.3 201 30.8
Eucgr.F02306 Eucalyptus grandis HOM05D004637 ORTHO05D005320 6.1e-12 76.3 196 30.1
Solyc12g088660.2 Solanum lycopersicum HOM05D004637 ORTHO05D005320 6.1e-12 76.3 196 30.6
AT4G07390 Arabidopsis thaliana HOM05D004637 ORTHO05D005320 8.0e-12 75.9 195 29.2
Psat6g015000 Pisum sativum HOM05D004637 ORTHO05D005320 8.0e-12 75.9 170 29.4
PGR083G2827 Punica granatum HOM05D004637 ORTHO05D005320 8.0e-12 75.9 175 29.7
Carub.0008s2014 Capsella rubella HOM05D004637 ORTHO05D005320 1.0e-11 75.5 203 28.6
Cc10_g04860 Coffea canephora HOM05D004637 ORTHO05D005320 1.4e-11 75.1 204 33.3
Thhalv10028929m.g Eutrema salsugineum HOM05D004637 ORTHO05D005320 1.4e-11 75.1 202 30.2
Medtr1g018800 Medicago truncatula HOM05D004637 ORTHO05D005320 1.4e-11 75.1 200 29.5
THA.LOC104825764 Tarenaya hassleriana HOM05D004637 ORTHO05D005320 1.4e-11 75.1 200 31.5
AL6G41290 Arabidopsis lyrata HOM05D004637 ORTHO05D005320 1.8e-11 74.7 195 29.2
Carub.0006s2649 Capsella rubella HOM05D004637 ORTHO05D005320 1.8e-11 74.7 195 29.7
CAN.G1194.20 Capsicum annuum HOM05D004637 ORTHO05D005320 2.3e-11 74.3 196 30.6
HanXRQChr10g0309661 Helianthus annuus HOM05D004637 ORTHO05D005320 3.0e-11 73.9 202 28.7
CiPaw.16G038000 Carya illinoinensis HOM05D004637 ORTHO05D005320 4.0e-11 73.6 205 31.2
Cfa018057 Carpinus fangiana HOM05D004637 ORTHO05D005320 5.2e-11 73.2 180 31.7
Lsat_1_v5_gn_1_22460 Lactuca sativa HOM05D004637 ORTHO05D005320 8.9e-11 72.4 198 27.8
Peaxi162Scf01087g00125 Petunia axillaris HOM05D004637 ORTHO05D005320 8.9e-11 72.4 179 29.1
Ah.08g212480 Amaranthus hybridus HOM05D004637 ORTHO05D005320 1.2e-10 72.0 219 26.9
RcHm_v2.0_Chr6g0308821 Rosa chinensis HOM05D004637 ORTHO05D005320 1.2e-10 72.0 203 31.5
Lj4A64T29 Lonicera japonica HOM05D004637 ORTHO05D005320 1.5e-10 71.6 174 32.8
unitig_26.g9809 Utricularia gibba HOM05D004637 ORTHO05D005320 2.0e-10 71.2 202 29.7
arahy.Tifrunner.gnm1.ann1.RG91LC Arachis hypogaea HOM05D004637 ORTHO05D005320 4.4e-10 70.1 195 30.3
arahy.Tifrunner.gnm1.ann1.UI0UDP Arachis hypogaea HOM05D004637 ORTHO05D005320 4.4e-10 70.1 195 30.3
ECA247G2514 Erigeron canadensis HOM05D004637 ORTHO05D005320 4.4e-10 70.1 186 28.0
BolC3t13818H Brassica oleracea HOM05D004637 ORTHO05D005320 9.8e-10 68.9 201 28.9
Nitab4.5_0006004g0010 Nicotiana tabacum HOM05D004637 ORTHO05D005320 1.3e-09 68.6 195 28.7
MCO13G491 Micromonas commoda HOM05D004637 ORTHO05D005320 2.2e-09 67.8 196 31.1
MCO13G508 Micromonas commoda HOM05D004637 ORTHO05D005320 2.2e-09 67.8 196 31.1
ClCG08G016150 Citrullus lanatus HOM05D004637 ORTHO05D005320 3.7e-09 67.0 201 30.8
Duzib093G0653 Durio zibethinus HOM05D004637 ORTHO05D005320 1.4e-08 65.1 195 31.3
Rhsim07G0225500 Rhododendron simsii HOM05D004637 ORTHO05D005320 1.4e-08 65.1 225 26.7
Sc02g0007520 Simmondsia chinensis HOM05D004637 ORTHO05D005320 2.4e-08 64.3 169 30.2
EL10As7g23788 Beta vulgaris HOM05D004637 ORTHO05D005320 3.2e-08 63.9 179 28.5
RcHm_v2.0_Chr0c32g0501551 Rosa chinensis HOM05D004637 ORTHO05D005320 3.2e-08 63.9 204 29.9
FAN15G1438 Fragaria x ananassa HOM05D004637 ORTHO05D005320 5.4e-08 63.2 187 26.7
FAN27G2280 Fragaria x ananassa HOM05D004637 ORTHO05D005320 9.2e-08 62.4 147 29.9
FAN24G1748 Fragaria x ananassa HOM05D004637 ORTHO05D005320 1.2e-07 62.0 170 28.8
Nitab4.5_0004339g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 5.9e-07 59.7 189 28.0
Manes.18G041200 Manihot esculenta HOM05D004637 ORTHO05D005320 1.0e-06 58.9 142 30.3
Nitab4.5_0006486g0040 Nicotiana tabacum HOM05D004637 ORTHO05D005320 3.0e-06 57.4 208 27.9
Nitab4.5_0010118g0060 Nicotiana tabacum HOM05D004637 ORTHO05D005320 8.6e-06 55.8 215 29.8


User provided reference genes

Program Settings