Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre06.g255500 Chlamydomonas reinhardtii HOM05D007111 ORTHO05D008698 0.0e+00 1178.7 798 100.0
MCO12G255 Micromonas commoda HOM05D007111 ORTHO05D008698 2.7e-11 75.1 281 27.8
PRCOL_00001900 Prasinoderma coloniale HOM05D007111 ORTHO05D008698 3.9e-10 71.2 555 27.0
Migut.F00562 Erythranthe guttata HOM05D007111 ORTHO05D008698 2.2e-08 65.5 85 41.2
Rhsim09G0187300 Rhododendron simsii HOM05D007111 ORTHO05D008698 3.7e-08 64.7 88 40.9
Hund15777 Selenicereus undatus HOM05D007111 ORTHO05D008698 4.8e-08 64.3 63 50.8
CARHR085410 Cardamine hirsuta HOM05D007111 ORTHO05D008698 8.2e-08 63.5 73 42.5
Lj1A970T56 Lonicera japonica HOM05D007111 ORTHO05D008698 1.4e-07 62.8 85 38.8
Actinidia01017 Actinidia chinensis HOM05D007111 ORTHO05D008698 2.4e-07 62.0 85 38.8
Thhalv10020632m.g Eutrema salsugineum HOM05D007111 ORTHO05D008698 2.4e-07 62.0 84 38.1
vmacro09946 Vaccinium macrocarpon HOM05D007111 ORTHO05D008698 2.4e-07 62.0 85 41.2
SalBow3G2513 Salvia bowleyana HOM05D007111 ORTHO05D008698 3.1e-07 61.6 61 47.5
SGA_v2.0_scaffold44G16613 Striga asiatica HOM05D007111 ORTHO05D008698 3.1e-07 61.6 61 49.2
AUR62031668 Chenopodium quinoa HOM05D007111 ORTHO05D008698 7.0e-07 60.5 61 47.5
Dinv34512 Davidia involucrata HOM05D007111 ORTHO05D008698 7.0e-07 60.5 85 40.0
Oeu001371.1 Olea europaea HOM05D007111 ORTHO05D008698 9.1e-07 60.1 81 44.4
CAN.G77.12 Capsicum annuum HOM05D007111 ORTHO05D008698 1.2e-06 59.7 84 38.1
Solyc03g095290.3 Solanum lycopersicum HOM05D007111 ORTHO05D008698 1.2e-06 59.7 84 38.1
CSS0034301 Camellia sinensis var. sinensis HOM05D007111 ORTHO05D008698 1.5e-06 59.3 85 38.8
RcHm_v2.0_Chr1g0372761 Rosa chinensis HOM05D007111 ORTHO05D008698 1.5e-06 59.3 81 38.3
Sp3g09160 Schrenkiella parvula HOM05D007111 ORTHO05D008698 1.5e-06 59.3 84 38.1
AL3G22360 Arabidopsis lyrata HOM05D007111 ORTHO05D008698 2.0e-06 58.9 527 21.3
Sopen03g025300 Solanum pennellii HOM05D007111 ORTHO05D008698 2.0e-06 58.9 84 38.1
MBI15_g31023_MAGBIO Magnolia biondii HOM05D007111 ORTHO05D008698 2.6e-06 58.5 85 35.3
Prupe.2G267200 Prunus persica HOM05D007111 ORTHO05D008698 2.6e-06 58.5 84 38.1
AUR62032551 Chenopodium quinoa HOM05D007111 ORTHO05D008698 3.5e-06 58.2 61 44.3
Nitab4.5_0001493g0010 Nicotiana tabacum HOM05D007111 ORTHO05D008698 3.5e-06 58.2 85 38.8
HPP92_019044 Vanilla planifolia HOM05D007111 ORTHO05D008698 3.5e-06 58.2 57 43.9
Ah.10g030620 Amaranthus hybridus HOM05D007111 ORTHO05D008698 4.5e-06 57.8 60 45.0
EL10Ac2g02692 Beta vulgaris HOM05D007111 ORTHO05D008698 4.5e-06 57.8 62 45.2
DCAR_009466 Daucus carota HOM05D007111 ORTHO05D008698 4.5e-06 57.8 79 38.0
Nitab4.5_0000103g0010 Nicotiana tabacum HOM05D007111 ORTHO05D008698 4.5e-06 57.8 85 40.0
AT3G10840 Arabidopsis thaliana HOM05D007111 ORTHO05D008698 5.9e-06 57.4 527 21.3
Eucgr.G03170 Eucalyptus grandis HOM05D007111 ORTHO05D008698 5.9e-06 57.4 79 39.2


User provided reference genes

Program Settings