Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre06.g255050 Chlamydomonas reinhardtii HOM05D002547 ORTHO05D002649 0.0e+00 1138.3 809 100.0
ClCG06G007010 Citrullus lanatus HOM05D002547 ORTHO05D002649 2.3e-10 72.0 142 40.8
Lj5g0007229 Lotus japonicus HOM05D002547 ORTHO05D002649 3.1e-10 71.6 98 45.9
TWI09G0763 Tripterygium wilfordii HOM05D002547 ORTHO05D002649 3.1e-10 71.6 98 48.0
QL06p018143 Quercus lobata HOM05D002547 ORTHO05D002649 4.0e-10 71.2 111 43.2
MELO3C022999.2 Cucumis melo HOM05D002547 ORTHO05D002649 5.2e-10 70.9 142 40.1
CsaV3_2G012750 Cucumis sativus L. HOM05D002547 ORTHO05D002649 5.2e-10 70.9 142 40.1
TWI53G1948 Tripterygium wilfordii HOM05D002547 ORTHO05D002649 5.2e-10 70.9 99 48.5
Os07g0446100 Oryza sativa ssp. japonica HOM05D002547 ORTHO05D002649 6.8e-10 70.5 119 42.0
PGR004G2720 Punica granatum HOM05D002547 ORTHO05D002649 6.8e-10 70.5 98 44.9
Psat6g116360 Pisum sativum HOM05D002547 ORTHO05D002649 1.2e-09 69.7 98 45.9
PGSC0003DMG401010896 Solanum tuberosum HOM05D002547 ORTHO05D002649 1.2e-09 69.7 99 45.5
Lalb_Chr06g0169051 Lupinus albus HOM05D002547 ORTHO05D002649 1.5e-09 69.3 98 46.9
HPP92_008602 Vanilla planifolia HOM05D002547 ORTHO05D002649 1.5e-09 69.3 106 46.2
Sabra08G0127700 Salix brachista HOM05D002547 ORTHO05D002649 2.0e-09 68.9 142 36.6
CAN.G1492.3 Capsicum annuum HOM05D002547 ORTHO05D002649 2.6e-09 68.6 99 44.4
CANSAT01G0753 Cannabis sativa HOM05D002547 ORTHO05D002649 3.4e-09 68.2 143 39.2
FvH4_4g03720 Fragaria vesca HOM05D002547 ORTHO05D002649 4.4e-09 67.8 110 40.9
FAN12G1556 Fragaria x ananassa HOM05D002547 ORTHO05D002649 4.4e-09 67.8 110 40.9
FAN17G1768 Fragaria x ananassa HOM05D002547 ORTHO05D002649 4.4e-09 67.8 110 40.9
Thecc.04G256300 Theobroma cacao HOM05D002547 ORTHO05D002649 4.4e-09 67.8 98 44.9
GSVIVG01020545001 Vitis vinifera HOM05D002547 ORTHO05D002649 4.4e-09 67.8 98 43.9
Cfa002436 Carpinus fangiana HOM05D002547 ORTHO05D002649 5.8e-09 67.4 136 38.2
Manes.13G034900 Manihot esculenta HOM05D002547 ORTHO05D002649 5.8e-09 67.4 106 43.4
Nitab4.5_0001327g0060 Nicotiana tabacum HOM05D002547 ORTHO05D002649 5.8e-09 67.4 99 44.4
BcaC09g49278 Brassica carinata HOM05D002547 ORTHO05D002649 9.8e-09 66.6 98 43.9
C01p40620 Brassica napus HOM05D002547 ORTHO05D002649 9.8e-09 66.6 98 43.9
Duzib151G0140 Durio zibethinus HOM05D002547 ORTHO05D002649 9.8e-09 66.6 98 46.9
MD16G1219900 Malus domestica HOM05D002547 ORTHO05D002649 9.8e-09 66.6 99 44.4
QL09p039271 Quercus lobata HOM05D002547 ORTHO05D002649 9.8e-09 66.6 99 46.5
SMO356G0496 Selaginella moellendorffii HOM05D002547 ORTHO05D002649 9.8e-09 66.6 114 39.5
Aa31LG8G9820 Aethionema arabicum HOM05D002547 ORTHO05D002649 1.3e-08 66.2 98 44.9
AT3G23280 Arabidopsis thaliana HOM05D002547 ORTHO05D002649 1.3e-08 66.2 99 43.4
BcaB06g26471 Brassica carinata HOM05D002547 ORTHO05D002649 1.3e-08 66.2 111 40.5
A07p09190 Brassica napus HOM05D002547 ORTHO05D002649 1.3e-08 66.2 111 40.5
C07p14180 Brassica napus HOM05D002547 ORTHO05D002649 1.3e-08 66.2 111 40.5
BolC7t41914H Brassica oleracea HOM05D002547 ORTHO05D002649 1.3e-08 66.2 111 40.5
BraA07t28714Z Brassica rapa HOM05D002547 ORTHO05D002649 1.3e-08 66.2 111 40.5
COL.COLO4_15884 Corchorus olitorius HOM05D002547 ORTHO05D000256 1.3e-08 66.2 98 43.9
MD13G1214800 Malus domestica HOM05D002547 ORTHO05D002649 1.3e-08 66.2 99 44.4
Sp3g20940 Schrenkiella parvula HOM05D002547 ORTHO05D002649 1.3e-08 66.2 98 43.9
THA.LOC104808626 Tarenaya hassleriana HOM05D002547 ORTHO05D002649 1.3e-08 66.2 98 43.9
CiPaw.03G265300 Carya illinoinensis HOM05D002547 ORTHO05D002649 1.7e-08 65.9 136 37.5
QL09p039258 Quercus lobata HOM05D002547 ORTHO05D002649 1.7e-08 65.9 99 42.4
GSVIVG01027825001 Vitis vinifera HOM05D002547 ORTHO05D002649 1.7e-08 65.9 98 44.9
CARHR099240 Cardamine hirsuta HOM05D002547 ORTHO05D002649 2.2e-08 65.5 98 43.9
Cre16.g681354 Chlamydomonas reinhardtii HOM05D044649 ORTHO05D141203 2.2e-08 65.5 54 51.9
MBI07_g16925_MAGBIO Magnolia biondii HOM05D002547 ORTHO05D002649 2.2e-08 65.5 106 44.3
Nitab4.5_0000326g0080 Nicotiana tabacum HOM05D002547 ORTHO05D002649 2.2e-08 65.5 99 43.4
Potri.005G225300 Populus trichocarpa HOM05D002547 ORTHO05D002649 2.2e-08 65.5 107 41.1
Prupe.1G040200 Prunus persica HOM05D002547 ORTHO05D002649 2.2e-08 65.5 99 43.4
Thhalv10020731m.g Eutrema salsugineum HOM05D002547 ORTHO05D002649 2.9e-08 65.1 98 43.9
RcHm_v2.0_Chr4g0393331 Rosa chinensis HOM05D002547 ORTHO05D002649 2.9e-08 65.1 99 43.4
BcaC08g44403 Brassica carinata HOM05D002547 ORTHO05D002649 3.7e-08 64.7 98 44.9
C06p18390 Brassica napus HOM05D002547 ORTHO05D002649 3.7e-08 64.7 98 44.9
Carub.0003s2638 Capsella rubella HOM05D002547 ORTHO05D002649 3.7e-08 64.7 98 43.9
Phvul.007G108300 Phaseolus vulgaris HOM05D002547 ORTHO05D002649 3.7e-08 64.7 98 40.8
Sed0022557 Sechium edule HOM05D002547 ORTHO05D002649 3.7e-08 64.7 109 41.3
A07p19820 Brassica napus HOM05D002547 ORTHO05D002649 4.9e-08 64.3 98 44.9
CSS0001322 Camellia sinensis var. sinensis HOM05D002547 ORTHO05D002649 4.9e-08 64.3 98 43.9
Cpa.g.sc44.48 Carica papaya HOM05D002547 ORTHO05D002649 4.9e-08 64.3 98 44.9
CDE08G0895 Ceratophyllum demersum HOM05D002547 ORTHO05D002649 4.9e-08 64.3 98 42.9
Potri.008G167600 Populus trichocarpa HOM05D002547 ORTHO05D002649 4.9e-08 64.3 109 41.3
VMungo0720G2161 Vigna mungo HOM05D002547 ORTHO05D002649 4.9e-08 64.3 98 39.8
Aqoxy2G03657 Aquilegia oxysepala HOM05D002547 ORTHO05D002649 6.4e-08 63.9 139 38.8
AL3G37930 Arabidopsis lyrata HOM05D002547 ORTHO05D002649 6.4e-08 63.9 99 42.4
Cfa022964 Carpinus fangiana HOM05D002547 ORTHO05D002649 6.4e-08 63.9 98 43.9
ClCG05G004300 Citrullus lanatus HOM05D002547 ORTHO05D002649 6.4e-08 63.9 98 41.8
Duzib138G1857 Durio zibethinus HOM05D002547 ORTHO05D002649 6.4e-08 63.9 135 38.5
ECA240G4098 Erigeron canadensis HOM05D002547 ORTHO05D002649 6.4e-08 63.9 98 42.9
Gohir.D10G156800 Gossypium hirsutum HOM05D002547 ORTHO05D002649 6.4e-08 63.9 111 39.6
Gorai.011G174600 Gossypium raimondii HOM05D002547 ORTHO05D002649 6.4e-08 63.9 111 39.6
MBI10_g20268_MAGBIO Magnolia biondii HOM05D002547 ORTHO05D002649 6.4e-08 63.9 98 43.9
Lsat_1_v5_gn_3_118301 Lactuca sativa HOM05D002547 ORTHO05D002649 8.3e-08 63.5 98 42.9
Nitab4.5_0003591g0010 Nicotiana tabacum HOM05D002547 ORTHO05D002649 8.3e-08 63.5 109 39.4
Pp3c13_4370 Physcomitrium patens HOM05D002547 ORTHO05D002649 8.3e-08 63.5 118 39.8
Sp7g12440 Schrenkiella parvula HOM05D002547 ORTHO05D002649 8.3e-08 63.5 100 45.0
Sopen06g003270 Solanum pennellii HOM05D002547 ORTHO05D002649 8.3e-08 63.5 99 42.4
BolC6t37052H Brassica oleracea HOM05D002547 ORTHO05D002649 1.1e-07 63.2 98 43.9
Eucgr.H03040 Eucalyptus grandis HOM05D002547 ORTHO05D002649 1.1e-07 63.2 108 41.7
Peaxi162Scf01265g00123 Petunia axillaris HOM05D002547 ORTHO05D002649 1.1e-07 63.2 109 38.5
Pp3c23_11570 Physcomitrium patens HOM05D002547 ORTHO05D002649 1.1e-07 63.2 139 37.4
Solyc06g008500.3 Solanum lycopersicum HOM05D002547 ORTHO05D002649 1.1e-07 63.2 99 42.4
vmacro08479 Vaccinium macrocarpon HOM05D002547 ORTHO05D002649 1.1e-07 63.2 98 43.9
CSS0018016 Camellia sinensis var. sinensis HOM05D002547 ORTHO05D002649 1.4e-07 62.8 98 44.9
THA.LOC104804754 Tarenaya hassleriana HOM05D002547 ORTHO05D002649 1.4e-07 62.8 111 40.5
unitig_32.g10847 Utricularia gibba HOM05D002547 ORTHO05D002649 1.4e-07 62.8 94 43.6
MSTRG.24679 Avicennia marina HOM05D002547 ORTHO05D002649 1.9e-07 62.4 98 43.9
Ciclev10024413m.g Citrus clementina HOM05D002547 ORTHO05D002649 1.9e-07 62.4 98 41.8
Medtr1g476030 Medicago truncatula HOM05D002547 ORTHO05D002649 1.9e-07 62.4 98 41.8
Sed0027434 Sechium edule HOM05D002547 ORTHO05D002649 1.9e-07 62.4 98 40.8
SMO358G0400 Selaginella moellendorffii HOM05D002547 ORTHO05D002649 1.9e-07 62.4 139 37.4
Dinv29853 Davidia involucrata HOM05D002547 ORTHO05D002649 2.4e-07 62.0 116 37.9
Nn1g02785 Nelumbo nucifera HOM05D002547 ORTHO05D002649 2.4e-07 62.0 110 40.0
Thecc.01G257100 Theobroma cacao HOM05D002547 ORTHO05D002649 2.4e-07 62.0 135 35.6
Ah.04g155710 Amaranthus hybridus HOM05D002547 ORTHO05D002649 3.2e-07 61.6 98 40.8
Cc03_g05610 Coffea canephora HOM05D002547 ORTHO05D002649 3.2e-07 61.6 98 43.9
Haze_11390 Corylus avellana HOM05D002547 ORTHO05D002649 3.2e-07 61.6 111 38.7
MELO3C006418.2 Cucumis melo HOM05D002547 ORTHO05D002649 3.2e-07 61.6 98 40.8
Gohir.A10G111700 Gossypium hirsutum HOM05D002547 ORTHO05D002649 3.2e-07 61.6 111 39.6
Manes.03G163701 Manihot esculenta HOM05D002547 ORTHO05D002649 4.1e-07 61.2 98 42.9
Pp3c24_10150 Physcomitrium patens HOM05D002547 ORTHO05D002649 4.1e-07 61.2 139 37.4
TAR365G0526 Trochodendron aralioides HOM05D002547 ORTHO05D002649 4.1e-07 61.2 98 42.9
EL10As5g23490 Beta vulgaris HOM05D002547 ORTHO05D002649 5.4e-07 60.8 142 33.8
Migut.G00512 Erythranthe guttata HOM05D002547 ORTHO05D002649 5.4e-07 60.8 98 41.8
Potri.010G070750 Populus trichocarpa HOM05D002547 ORTHO05D002649 5.4e-07 60.8 109 37.6
BraA07t29686Z Brassica rapa HOM05D002547 ORTHO05D002649 7.1e-07 60.5 104 42.3
CsaV3_3G012040 Cucumis sativus L. HOM05D002547 ORTHO05D002649 7.1e-07 60.5 98 40.8
DCAR_030746 Daucus carota HOM05D002547 ORTHO05D002649 7.1e-07 60.5 98 42.9
Gorai.007G146700 Gossypium raimondii HOM05D002547 ORTHO05D002649 7.1e-07 60.5 169 33.1
Pp3c4_25520 Physcomitrium patens HOM05D002547 ORTHO05D002649 7.1e-07 60.5 108 41.7
PGSC0003DMG400017222 Solanum tuberosum HOM05D002547 ORTHO05D002649 7.1e-07 60.5 98 42.9
SGA_v2.0_scaffold67G22739 Striga asiatica HOM05D002547 ORTHO05D002649 7.1e-07 60.5 98 41.8
AUR62011846 Chenopodium quinoa HOM05D002547 ORTHO05D002649 9.2e-07 60.1 140 35.0
Haze_24642 Corylus avellana HOM05D002547 ORTHO05D002649 9.2e-07 60.1 135 34.8
Lj6C635T4 Lonicera japonica HOM05D002547 ORTHO05D002649 9.2e-07 60.1 106 42.5
Nn3g19668 Nelumbo nucifera HOM05D002547 ORTHO05D002649 9.2e-07 60.1 143 35.0
BcaB04g20457 Brassica carinata HOM05D002547 ORTHO05D002649 1.2e-06 59.7 116 37.1
CANSAT78G1529 Cannabis sativa HOM05D002547 ORTHO05D002649 1.2e-06 59.7 98 41.8
CARHR220580 Cardamine hirsuta HOM05D002547 ORTHO05D002649 1.2e-06 59.7 98 41.8
Hma1.2p1_0992F.1_g245230 Hydrangea macrophylla HOM05D002547 ORTHO05D002649 1.2e-06 59.7 98 42.9
Hund02928 Selenicereus undatus HOM05D002547 ORTHO05D002649 1.2e-06 59.7 163 33.7
Hund03046 Selenicereus undatus HOM05D002547 ORTHO05D002649 1.2e-06 59.7 109 38.5
Atru.chr4.2051 Acer truncatum HOM05D002547 ORTHO05D002649 1.6e-06 59.3 98 41.8
AUR62011847 Chenopodium quinoa HOM05D002547 ORTHO05D002649 2.1e-06 58.9 98 41.8
Rhsim01G0262700 Rhododendron simsii HOM05D002547 ORTHO05D002649 2.1e-06 58.9 98 41.8
Sc13g0005750 Simmondsia chinensis HOM05D002547 ORTHO05D002649 2.1e-06 58.9 98 40.8
MSTRG.9887 Avicennia marina HOM05D002547 ORTHO05D002649 2.7e-06 58.5 98 41.8
Carub.0007s2789 Capsella rubella HOM05D002547 ORTHO05D002649 2.7e-06 58.5 99 40.4
ECA240G2110 Erigeron canadensis HOM05D002547 ORTHO05D002649 2.7e-06 58.5 136 34.6
Actinidia25796 Actinidia chinensis HOM05D002547 ORTHO05D002649 3.5e-06 58.2 146 35.6
Ah.02g112090 Amaranthus hybridus HOM05D002547 ORTHO05D002649 3.5e-06 58.2 98 38.8
Solyc09g090160.3 Solanum lycopersicum HOM05D002547 ORTHO05D002649 3.5e-06 58.2 98 41.8
Sopen09g033080 Solanum pennellii HOM05D002547 ORTHO05D002649 3.5e-06 58.2 98 41.8
CAN.G1634.1 Capsicum annuum HOM05D002547 ORTHO05D002649 4.6e-06 57.8 94 41.5
AUR62002144 Chenopodium quinoa HOM05D002547 ORTHO05D002649 4.6e-06 57.8 100 41.0
Dinv27056 Davidia involucrata HOM05D002547 ORTHO05D002649 4.6e-06 57.8 98 40.8
Sabra05G0173900 Salix brachista HOM05D002547 ORTHO05D002649 4.6e-06 57.8 94 40.4
Atru.chr5.1706 Acer truncatum HOM05D002547 ORTHO05D002649 6.0e-06 57.4 113 38.9
CARHR099250 Cardamine hirsuta HOM05D002547 ORTHO05D002649 6.0e-06 57.4 100 41.0
Gohir.A11G131300 Gossypium hirsutum HOM05D002547 ORTHO05D002649 7.8e-06 57.0 167 33.5
TAR362G1190 Trochodendron aralioides HOM05D002547 ORTHO05D002649 7.8e-06 57.0 98 40.8


User provided reference genes

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