Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre06.g251750 Chlamydomonas reinhardtii HOM05D005619 ORTHO05D006696 1.1e-110 403.3 205 100.0
CBR_g38120 Chara braunii HOM05D005619 ORTHO05D006696 3.0e-31 139.4 189 34.9
Mapoly0034s0059 Marchantia polymorpha HOM05D005619 ORTHO05D006696 2.7e-24 116.3 187 38.0
MBI05_g05306_MAGBIO Magnolia biondii HOM05D005619 ORTHO05D006696 3.6e-24 115.9 192 33.3
COL.COLO4_38547 Corchorus olitorius HOM05D005598 ORTHO05D006587 6.1e-24 115.2 188 35.1
HPP92_000355 Vanilla planifolia HOM05D000755 ORTHO05D000642 8.0e-24 114.8 186 35.5
HPP92_000422 Vanilla planifolia HOM05D000755 ORTHO05D006696 8.0e-24 114.8 186 34.9
Gohir.A06G163800 Gossypium hirsutum HOM05D005619 ORTHO05D006696 1.4e-23 114.0 187 33.7
Gohir.D06G169500 Gossypium hirsutum HOM05D005619 ORTHO05D006696 1.4e-23 114.0 187 33.7
Gorai.010G198200 Gossypium raimondii HOM05D005619 ORTHO05D006696 1.4e-23 114.0 187 33.7
Mapoly0053s0030 Marchantia polymorpha HOM05D005619 ORTHO05D006696 1.4e-23 114.0 189 37.0
SMO356G0622 Selaginella moellendorffii HOM05D005619 ORTHO05D006696 2.3e-23 113.2 192 35.4
Thecc.10G016900 Theobroma cacao HOM05D005619 ORTHO05D006696 3.0e-23 112.8 186 34.4
Cpa.g.sc19.176 Carica papaya HOM05D005619 ORTHO05D006696 4.0e-23 112.5 186 32.8
Os08g0274700 Oryza sativa ssp. japonica HOM05D005619 ORTHO05D006696 4.0e-23 112.5 192 32.3
Zm00001eb412290 Zea mays HOM05D005619 ORTHO05D006696 8.8e-23 111.3 192 32.3
GSVIVG01032822001 Vitis vinifera HOM05D005619 ORTHO05D006696 1.5e-22 110.5 186 31.7
Duzib128G1619 Durio zibethinus HOM05D005619 ORTHO05D006696 7.5e-22 108.2 186 33.9
Eucgr.G03057 Eucalyptus grandis HOM05D005619 ORTHO05D006696 7.5e-22 108.2 187 32.6
Aqoxy5G02842 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 1.3e-21 107.5 187 32.1
CDE04G2394 Ceratophyllum demersum HOM05D005619 ORTHO05D006696 1.3e-21 107.5 188 31.4
Duzib114G0170 Durio zibethinus HOM05D005619 ORTHO05D006696 1.3e-21 107.5 186 33.3
Nn2g11500 Nelumbo nucifera HOM05D005619 ORTHO05D006696 1.3e-21 107.5 188 32.4
Pp3c25_12660 Physcomitrium patens HOM05D005619 ORTHO05D006696 1.7e-21 107.1 190 34.2
Sed0003089 Sechium edule HOM05D005619 ORTHO05D006696 1.7e-21 107.1 188 31.4
ATR0481G004 Amborella trichopoda HOM05D005619 ORTHO05D006696 2.2e-21 106.7 186 31.7
PGR142G0483 Punica granatum HOM05D005619 ORTHO05D006696 2.2e-21 106.7 188 29.3
Atru.chr12.29 Acer truncatum HOM05D005619 ORTHO05D006696 4.8e-21 105.5 185 34.6
AagrBONN_evm.TU.Sc2ySwM_228.5247 Anthoceros agrestis HOM05D005619 ORTHO05D006696 4.8e-21 105.5 134 38.1
Aqoxy4G02564 Aquilegia oxysepala HOM05D005619 ORTHO05D006696 8.3e-21 104.8 187 32.1
PSO339G2325 Papaver somniferum HOM05D005619 ORTHO05D006696 8.3e-21 104.8 187 32.1
CsaV3_6G001830 Cucumis sativus L. HOM05D005619 ORTHO05D006696 1.4e-20 104.0 188 33.5
THA.LOC104824313 Tarenaya hassleriana HOM05D005619 ORTHO05D006696 1.8e-20 103.6 188 33.0
ClCG11G006160 Citrullus lanatus HOM05D005619 ORTHO05D006696 2.4e-20 103.2 189 33.3
Hund13861 Selenicereus undatus HOM05D005619 ORTHO05D006696 3.1e-20 102.8 170 30.6
Zm00001eb198650 Zea mays HOM05D005619 ORTHO05D006696 3.1e-20 102.8 192 30.2
TAR369G0168 Trochodendron aralioides HOM05D005619 ORTHO05D006696 4.1e-20 102.4 186 31.2
Thhalv10017287m.g Eutrema salsugineum HOM05D005619 ORTHO05D006696 2.0e-19 100.1 190 31.1
Medtr3g070470 Medicago truncatula HOM05D005619 ORTHO05D006696 2.0e-19 100.1 186 31.2
Sc11g0001040 Simmondsia chinensis HOM05D005619 ORTHO05D006696 2.7e-19 99.8 170 30.0
A04p30090 Brassica napus HOM05D005619 ORTHO05D006696 3.5e-19 99.4 185 30.3
CSS0006168 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 3.5e-19 99.4 186 29.0
arahy.Tifrunner.gnm1.ann1.IDH5I9 Arachis hypogaea HOM05D005619 ORTHO05D006696 4.5e-19 99.0 188 30.9
Actinidia31994 Actinidia chinensis HOM05D005619 ORTHO05D006696 5.9e-19 98.6 188 30.3
arahy.Tifrunner.gnm1.ann1.2YL4XG Arachis hypogaea HOM05D005619 ORTHO05D006696 5.9e-19 98.6 188 30.9
BraA04t18498Z Brassica rapa HOM05D005619 ORTHO05D006696 5.9e-19 98.6 188 29.8
CARHR165540 Cardamine hirsuta HOM05D005619 ORTHO05D006696 7.7e-19 98.2 188 30.3
CANSAT56G2799 Cannabis sativa HOM05D005619 ORTHO05D006696 1.0e-18 97.8 189 30.7
Phvul.001G242800 Phaseolus vulgaris HOM05D005619 ORTHO05D006696 1.3e-18 97.4 188 29.8
Potri.010G189200 Populus trichocarpa HOM05D005619 ORTHO05D006696 1.3e-18 97.4 189 31.7
Manes.04G157300 Manihot esculenta HOM05D005619 ORTHO05D006696 1.7e-18 97.1 188 29.8
EL10Ac2g04534 Beta vulgaris HOM05D005619 ORTHO05D006696 2.3e-18 96.7 189 31.2
CARHR135030 Cardamine hirsuta HOM05D005619 ORTHO05D006696 2.3e-18 96.7 190 29.5
Hma1.2p1_2256F.1_g318210 Hydrangea macrophylla HOM05D005619 ORTHO05D006696 2.3e-18 96.7 186 32.3
Lj3A878T24 Lonicera japonica HOM05D005619 ORTHO05D006696 2.3e-18 96.7 186 32.3
BolC4t28280H Brassica oleracea HOM05D005619 ORTHO05D006696 2.9e-18 96.3 185 30.3
Oeu057772.1 Olea europaea HOM05D005619 ORTHO05D006696 2.9e-18 96.3 190 32.6
Potri.008G068100 Populus trichocarpa HOM05D005619 ORTHO05D006696 5.0e-18 95.5 189 31.2
Cc03_g10740 Coffea canephora HOM05D005619 ORTHO05D006696 6.5e-18 95.1 188 31.9
Sp4g22380 Schrenkiella parvula HOM05D005619 ORTHO05D006696 6.5e-18 95.1 190 30.0
BcaC02g07350 Brassica carinata HOM05D005619 ORTHO05D006696 8.6e-18 94.7 185 29.7
BcaNung05464 Brassica carinata HOM05D005619 ORTHO05D006696 8.6e-18 94.7 188 29.3
C04p67770 Brassica napus HOM05D005619 ORTHO05D006696 8.6e-18 94.7 185 29.7
DCAR_026757 Daucus carota HOM05D005619 ORTHO05D006696 8.6e-18 94.7 189 31.2
RcHm_v2.0_Chr1g0370121 Rosa chinensis HOM05D005619 ORTHO05D006696 8.6e-18 94.7 190 30.5
AUR62034382 Chenopodium quinoa HOM05D005619 ORTHO05D006696 1.1e-17 94.4 172 30.8
Dinv16155 Davidia involucrata HOM05D005619 ORTHO05D006696 1.5e-17 94.0 186 29.6
Lsat_1_v5_gn_8_41961 Lactuca sativa HOM05D005619 ORTHO05D006696 1.5e-17 94.0 186 31.7
AL5G36640 Arabidopsis lyrata HOM05D005619 ORTHO05D006696 1.9e-17 93.6 188 29.8
AT1G19080 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 1.9e-17 93.6 188 29.8
AT3G55490 Arabidopsis thaliana HOM05D005619 ORTHO05D006696 1.9e-17 93.6 188 29.8
FAN10G0566 Fragaria x ananassa HOM05D005619 ORTHO05D006696 1.9e-17 93.6 190 30.5
Lj1g0018800 Lotus japonicus HOM05D005619 ORTHO05D006696 1.9e-17 93.6 188 30.3
Lalb_Chr03g0027081 Lupinus albus HOM05D005619 ORTHO05D006696 1.9e-17 93.6 185 28.6
TAR633G2706 Trochodendron aralioides HOM05D005619 ORTHO05D006696 2.5e-17 93.2 132 33.3
VMungo1383G0062 Vigna mungo HOM05D005619 ORTHO05D006696 2.5e-17 93.2 185 29.2
FAN01G2425 Fragaria x ananassa HOM05D005619 ORTHO05D006696 3.2e-17 92.8 190 30.5
HanXRQChr08g0213181 Helianthus annuus HOM05D005619 ORTHO05D006696 3.2e-17 92.8 188 32.4
Sabra08G0050000 Salix brachista HOM05D005619 ORTHO05D006696 3.2e-17 92.8 191 30.9
Carub.0005s2221 Capsella rubella HOM05D005619 ORTHO05D006696 4.2e-17 92.4 186 31.7
Glyma.11G229600 Glycine max HOM05D005619 ORTHO05D006696 4.2e-17 92.4 188 30.9
HanXRQChr09g0271791 Helianthus annuus HOM05D005619 ORTHO05D006696 4.2e-17 92.4 186 32.3
TPR.G16245 Trifolium pratense HOM05D005619 ORTHO05D006696 4.2e-17 92.4 191 29.3
unitig_52.g17125 Utricularia gibba HOM05D005619 ORTHO05D006696 4.2e-17 92.4 187 29.9
AUR62022323 Chenopodium quinoa HOM05D005619 ORTHO05D006696 5.5e-17 92.0 172 30.2
FvH4_7g24440 Fragaria vesca HOM05D005619 ORTHO05D006696 5.5e-17 92.0 190 30.0
Glyma.18G027600 Glycine max HOM05D005619 ORTHO05D006696 5.5e-17 92.0 188 30.3
MD01G1152600 Malus domestica HOM05D005619 ORTHO05D006696 5.5e-17 92.0 188 28.7
Psat5g128520 Pisum sativum HOM05D005619 ORTHO05D006696 7.2e-17 91.7 189 30.2
SalBow8G4625 Salvia bowleyana HOM05D005619 ORTHO05D006696 7.2e-17 91.7 188 30.9
Cfa001322 Carpinus fangiana HOM05D005619 ORTHO05D006696 9.5e-17 91.3 129 32.6
QL08p063145 Quercus lobata HOM05D005619 ORTHO05D006696 9.5e-17 91.3 188 28.7
COL.COLO4_25718 Corchorus olitorius HOM05D005619 ORTHO05D006696 2.8e-16 89.7 150 32.7
Solyc05g008620.4 Solanum lycopersicum HOM05D005619 ORTHO05D006696 3.6e-16 89.4 188 33.0
Sopen05g004460 Solanum pennellii HOM05D005619 ORTHO05D006696 3.6e-16 89.4 188 33.0
MSTRG.870 Avicennia marina HOM05D005619 ORTHO05D006696 4.7e-16 89.0 191 30.4
DCAR_023625 Daucus carota HOM05D005619 ORTHO05D006696 4.7e-16 89.0 151 32.5
ECA233G2873 Erigeron canadensis HOM05D005619 ORTHO05D006696 4.7e-16 89.0 186 30.1
MCO08G248 Micromonas commoda HOM05D005619 ORTHO05D006696 4.7e-16 89.0 190 27.9
Cc03_g13530 Coffea canephora HOM05D005619 ORTHO05D006696 6.1e-16 88.6 164 31.7
HanXRQChr15g0468911 Helianthus annuus HOM05D005619 ORTHO05D006696 6.1e-16 88.6 188 31.4
PGSC0003DMG400030566 Solanum tuberosum HOM05D005619 ORTHO05D006696 6.1e-16 88.6 188 33.0
AagrBONN_evm.TU.Sc2ySwM_344.729 Anthoceros agrestis HOM05D005619 ORTHO05D006696 8.0e-16 88.2 188 30.3
Haze_17223 Corylus avellana HOM05D005619 ORTHO05D006696 8.0e-16 88.2 129 31.0
Ciclev10033435m.g Citrus clementina HOM05D005619 ORTHO05D006696 1.0e-15 87.8 170 31.2
ECA247G2146 Erigeron canadensis HOM05D005619 ORTHO05D006696 1.4e-15 87.4 186 30.6
Migut.E00386 Erythranthe guttata HOM05D005619 ORTHO05D006696 4.0e-15 85.9 188 31.4
Peaxi162Scf00451g00930 Petunia axillaris HOM05D005619 ORTHO05D006696 4.0e-15 85.9 188 30.9
CiPaw.02G192300 Carya illinoinensis HOM05D000781 ORTHO05D000643 1.2e-14 84.3 129 29.5
BcaC02g07392 Brassica carinata HOM05D005619 ORTHO05D006696 3.4e-14 82.8 157 28.7
SGA_v2.0_scaffold170G38815 Striga asiatica HOM05D005619 ORTHO05D006696 3.4e-14 82.8 188 29.8
TWI53G0619 Tripterygium wilfordii HOM05D005619 ORTHO05D006696 9.8e-14 81.3 170 27.6
CSS0006460 Camellia sinensis var. sinensis HOM05D005619 ORTHO05D006696 1.3e-13 80.9 170 27.1
CiPaw.08G091200 Carya illinoinensis HOM05D005619 ORTHO05D006696 1.7e-13 80.5 129 27.9
Lalb_Chr01g0004131 Lupinus albus HOM05D005619 ORTHO05D006696 3.1e-12 76.3 206 24.8
FAN06G3728 Fragaria x ananassa HOM05D005619 ORTHO05D006696 4.1e-12 75.9 175 25.1
SalBow8G2997 Salvia bowleyana HOM05D005619 ORTHO05D006696 4.1e-12 75.9 204 28.9
CARHR159370 Cardamine hirsuta HOM05D005619 ORTHO05D006696 5.4e-12 75.5 98 33.7
Aa31LG5G19540 Aethionema arabicum HOM05D005619 ORTHO05D006696 1.6e-11 73.9 101 36.6
AagrBONN_evm.TU.Sc2ySwM_344.737 Anthoceros agrestis HOM05D005619 ORTHO05D006696 2.7e-11 73.2 101 37.6
MELO3C029903.2 Cucumis melo HOM05D005619 ORTHO05D006696 4.5e-11 72.4 202 30.7
C04p07340 Brassica napus HOM05D004515 ORTHO05D006013 3.8e-10 69.3 148 27.0
FAN06G2505 Fragaria x ananassa HOM05D005619 ORTHO05D006696 3.6e-08 62.8 132 28.0
Sabra10G0145900 Salix brachista HOM05D005619 ORTHO05D006696 4.0e-07 59.3 189 28.6
ATR0568G146 Amborella trichopoda HOM05D005619 ORTHO05D006696 5.2e-07 58.9 103 35.0
Nitab4.5_0003886g0110 Nicotiana tabacum HOM05D005619 ORTHO05D006696 1.5e-06 57.4 187 28.3
BolC4t22357H Brassica oleracea HOM05D004515 ORTHO05D006013 3.4e-06 56.2 88 34.1


User provided reference genes

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