Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre06.g250250 Chlamydomonas reinhardtii HOM05D003555 ORTHO05D004542 1.5e-209 732.6 374 100.0
Mapoly0126s0013 Marchantia polymorpha HOM05D003555 ORTHO05D004542 6.8e-98 361.7 373 49.6
Carub.0001s1258 Capsella rubella HOM05D003555 ORTHO05D004542 3.2e-95 352.8 371 48.5
VMungo0464G0001 Vigna mungo HOM05D003555 ORTHO05D004542 4.2e-95 352.4 371 49.1
TWI34G1938 Tripterygium wilfordii HOM05D003555 ORTHO05D004542 9.2e-95 351.3 370 48.4
Glyma.19G101000 Glycine max HOM05D003555 ORTHO05D004542 1.2e-94 350.9 372 48.4
PGR083G2609 Punica granatum HOM05D003555 ORTHO05D004542 1.2e-94 350.9 371 48.2
Sopen03g028540 Solanum pennellii HOM05D003555 ORTHO05D004542 2.1e-94 350.1 370 48.4
Pp3c13_14220 Physcomitrium patens HOM05D003555 ORTHO05D004542 2.7e-94 349.7 372 47.8
Solyc03g097800.4 Solanum lycopersicum HOM05D003555 ORTHO05D004542 2.7e-94 349.7 370 48.4
CAN.G257.127 Capsicum annuum HOM05D003555 ORTHO05D004542 6.0e-94 348.6 371 48.0
SEGI_35214 Sequoiadendron giganteum HOM05D003555 ORTHO05D004542 6.0e-94 348.6 370 48.9
Glyma.16G050200 Glycine max HOM05D003555 ORTHO05D004542 1.0e-93 347.8 371 48.5
Lalb_Chr14g0363981 Lupinus albus HOM05D003555 ORTHO05D004542 1.0e-93 347.8 371 48.5
Prupe.3G312200 Prunus persica HOM05D003555 ORTHO05D004542 1.0e-93 347.8 371 47.7
TPR.G17457 Trifolium pratense HOM05D003555 ORTHO05D004542 1.0e-93 347.8 373 47.7
Glyma.02G065500 Glycine max HOM05D003555 ORTHO05D004542 1.3e-93 347.4 370 47.8
Ciclev10015638m.g Citrus clementina HOM05D003555 ORTHO05D004542 1.7e-93 347.1 370 47.6
PSO478G0165 Papaver somniferum HOM05D003555 ORTHO05D004542 1.7e-93 347.1 370 47.8
Lalb_Chr24g0403201 Lupinus albus HOM05D003555 ORTHO05D004542 2.3e-93 346.7 371 48.8
MBI11_g08158_MAGBIO Magnolia biondii HOM05D003555 ORTHO05D004542 2.3e-93 346.7 369 47.4
Peaxi162Scf00171g01130 Petunia axillaris HOM05D003555 ORTHO05D004542 2.3e-93 346.7 370 47.3
Glyma.16G146600 Glycine max HOM05D003555 ORTHO05D004542 3.0e-93 346.3 370 47.6
CAN.G637.54 Capsicum annuum HOM05D003555 ORTHO05D004542 3.9e-93 345.9 370 47.6
Cfa007176 Carpinus fangiana HOM05D003555 ORTHO05D004542 5.1e-93 345.5 371 47.2
TWI60G1549 Tripterygium wilfordii HOM05D003555 ORTHO05D004542 6.6e-93 345.1 370 47.6
CiPaw.04G001900 Carya illinoinensis HOM05D003555 ORTHO05D004542 8.7e-93 344.7 371 47.7
Phvul.001G086700 Phaseolus vulgaris HOM05D003555 ORTHO05D004542 1.5e-92 344.0 371 48.2
Zm00001eb345260 Zea mays HOM05D003555 ORTHO05D004542 1.5e-92 344.0 371 48.5
Medtr7g083720 Medicago truncatula HOM05D003555 ORTHO05D004542 1.9e-92 343.6 381 47.2
MD17G1008500 Malus domestica HOM05D003555 ORTHO05D004542 2.5e-92 343.2 371 47.7
Os05g0593100 Oryza sativa ssp. japonica HOM05D003555 ORTHO05D004542 2.5e-92 343.2 371 47.2
Phvul.004G070900 Phaseolus vulgaris HOM05D003555 ORTHO05D004542 2.5e-92 343.2 371 47.7
MD09G1004500 Malus domestica HOM05D003555 ORTHO05D004542 3.3e-92 342.8 371 47.7
THA.LOC104805306 Tarenaya hassleriana HOM05D003555 ORTHO05D004542 3.3e-92 342.8 371 46.4
Atru.chr6.2636 Acer truncatum HOM05D003555 ORTHO05D004542 7.3e-92 341.7 370 47.6
BcaC05g25110 Brassica carinata HOM05D003555 ORTHO05D004542 7.3e-92 341.7 371 47.4
Thhalv10007948m.g Eutrema salsugineum HOM05D003555 ORTHO05D004542 7.3e-92 341.7 370 47.0
Gohir.D11G067700 Gossypium hirsutum HOM05D003555 ORTHO05D004542 7.3e-92 341.7 370 47.0
AT1G12840 Arabidopsis thaliana HOM05D003555 ORTHO05D004542 9.6e-92 341.3 370 47.0
A06p08830 Brassica napus HOM05D003555 ORTHO05D004542 9.6e-92 341.3 370 46.8
C08p15700 Brassica napus HOM05D003555 ORTHO05D004542 9.6e-92 341.3 371 46.6
BraA06t24078Z Brassica rapa HOM05D003555 ORTHO05D004542 9.6e-92 341.3 370 46.8
QL02p062748 Quercus lobata HOM05D003555 ORTHO05D004542 9.6e-92 341.3 371 47.2
THA.LOC104825653 Tarenaya hassleriana HOM05D003555 ORTHO05D004542 9.6e-92 341.3 372 47.3
C05p10440 Brassica napus HOM05D003555 ORTHO05D004542 1.2e-91 340.9 371 46.9
BolC5t29790H Brassica oleracea HOM05D003555 ORTHO05D004542 1.2e-91 340.9 371 46.9
BolC8t49197H Brassica oleracea HOM05D003555 ORTHO05D004542 1.2e-91 340.9 371 46.6
BraA08t35183Z Brassica rapa HOM05D003555 ORTHO05D004542 1.2e-91 340.9 371 46.6
ATR0582G027 Amborella trichopoda HOM05D003555 ORTHO05D004542 1.6e-91 340.5 369 46.9
AL1G24480 Arabidopsis lyrata HOM05D003555 ORTHO05D004542 1.6e-91 340.5 373 46.9
A08p32590 Brassica napus HOM05D003555 ORTHO05D004542 1.6e-91 340.5 371 46.6
BraA09t41708Z Brassica rapa HOM05D003555 ORTHO05D004542 1.6e-91 340.5 375 46.7
CSS0013918 Camellia sinensis var. sinensis HOM05D003555 ORTHO05D004542 1.6e-91 340.5 369 46.9
CARHR013160 Cardamine hirsuta HOM05D003555 ORTHO05D004542 1.6e-91 340.5 373 46.9
C08p47080 Brassica napus HOM05D003555 ORTHO05D004542 2.1e-91 340.1 370 47.0
CSS0044185 Camellia sinensis var. sinensis HOM05D003555 ORTHO05D004542 2.1e-91 340.1 369 46.6
Eucgr.G01943 Eucalyptus grandis HOM05D003555 ORTHO05D004542 2.1e-91 340.1 372 47.0
Lsat_1_v5_gn_4_84140 Lactuca sativa HOM05D003555 ORTHO05D004542 2.1e-91 340.1 369 46.6
SMO200G0006 Selaginella moellendorffii HOM05D003555 ORTHO05D004542 2.1e-91 340.1 371 45.3
BcaC07g40270 Brassica carinata HOM05D003555 ORTHO05D004542 2.8e-91 339.7 373 46.9
RcHm_v2.0_Chr2g0176361 Rosa chinensis HOM05D003555 ORTHO05D004542 2.8e-91 339.7 371 46.9
Gohir.A11G063400 Gossypium hirsutum HOM05D003555 ORTHO05D004542 3.6e-91 339.3 370 46.8
Duzib264G0281 Durio zibethinus HOM05D003555 ORTHO05D004542 4.7e-91 339.0 370 47.3
BcaC05g25150 Brassica carinata HOM05D003555 ORTHO05D004542 6.2e-91 338.6 371 46.6
BcaB03g13163 Brassica carinata HOM05D003555 ORTHO05D004542 8.1e-91 338.2 371 46.4
BcaC07g41676 Brassica carinata HOM05D003555 ORTHO05D004542 8.1e-91 338.2 373 46.6
A09p63580 Brassica napus HOM05D003555 ORTHO05D004542 8.1e-91 338.2 373 46.6
BolC8t50972H Brassica oleracea HOM05D003555 ORTHO05D004542 8.1e-91 338.2 373 46.6
HanXRQChr16g0528421 Helianthus annuus HOM05D003555 ORTHO05D004542 8.1e-91 338.2 369 46.1
BcaB08g34247 Brassica carinata HOM05D003555 ORTHO05D004542 1.1e-90 337.8 373 46.6
Sp1g11410 Schrenkiella parvula HOM05D003555 ORTHO05D004542 1.1e-90 337.8 373 46.4
GSVIVG01033006001 Vitis vinifera HOM05D003555 ORTHO05D004542 1.1e-90 337.8 370 47.3
ECA232G4336 Erigeron canadensis HOM05D003555 ORTHO05D004542 1.4e-90 337.4 371 46.1
Gohir.D04G073600 Gossypium hirsutum HOM05D003555 ORTHO05D004542 1.4e-90 337.4 370 47.0
EL10Ac3g05664 Beta vulgaris HOM05D003555 ORTHO05D004542 1.8e-90 337.0 370 46.2
CsaV3_5G020170 Cucumis sativus L. HOM05D003555 ORTHO05D004542 1.8e-90 337.0 371 47.2
C08p33730 Brassica napus HOM05D003555 ORTHO05D004542 2.4e-90 336.7 373 46.6
Lj1g0000762 Lotus japonicus HOM05D003555 ORTHO05D004542 2.4e-90 336.7 370 47.8
Cc05_g01690 Coffea canephora HOM05D003555 ORTHO05D004542 3.1e-90 336.3 370 45.7
Hund11754 Selenicereus undatus HOM05D003555 ORTHO05D004542 3.1e-90 336.3 370 46.2
THA.LOC104823995 Tarenaya hassleriana HOM05D003555 ORTHO05D004542 3.1e-90 336.3 373 46.1
TAR629G2425 Trochodendron aralioides HOM05D003555 ORTHO05D004542 3.1e-90 336.3 370 47.3
DCAR_016355 Daucus carota HOM05D003555 ORTHO05D004542 4.0e-90 335.9 370 46.5
Migut.D01225 Erythranthe guttata HOM05D003555 ORTHO05D004542 4.0e-90 335.9 370 46.2
Sed0008328 Sechium edule HOM05D003555 ORTHO05D004542 4.0e-90 335.9 371 46.9
MELO3C025061.2 Cucumis melo HOM05D003555 ORTHO05D004542 6.9e-90 335.1 371 46.9
Gorai.012G082900 Gossypium raimondii HOM05D003555 ORTHO05D004542 6.9e-90 335.1 370 46.5
Thecc.04G045300 Theobroma cacao HOM05D003555 ORTHO05D004542 6.9e-90 335.1 370 46.5
COL.COLO4_10540 Corchorus olitorius HOM05D003555 ORTHO05D004542 9.0e-90 334.7 370 46.5
Dinv11219 Davidia involucrata HOM05D003555 ORTHO05D004542 9.0e-90 334.7 369 45.8
Manes.04G091900 Manihot esculenta HOM05D003555 ORTHO05D004542 9.0e-90 334.7 371 46.4
CANSAT64G0789 Cannabis sativa HOM05D003555 ORTHO05D004542 1.2e-89 334.3 370 46.8
MSTRG.22881 Avicennia marina HOM05D003555 ORTHO05D004542 1.5e-89 334.0 370 45.9
CDE05G2896 Ceratophyllum demersum HOM05D003555 ORTHO05D004542 1.5e-89 334.0 369 46.3
VMungo1383G1114 Vigna mungo HOM05D003555 ORTHO05D004542 2.0e-89 333.6 356 48.6
Duzib187G1504 Durio zibethinus HOM05D003555 ORTHO05D004542 2.6e-89 333.2 370 46.2
AUR62015995 Chenopodium quinoa HOM05D003555 ORTHO05D004542 3.4e-89 332.8 371 45.3
ClCG01G008140 Citrullus lanatus HOM05D003555 ORTHO05D004542 3.4e-89 332.8 371 46.4
arahy.Tifrunner.gnm1.ann1.N4MBCZ Arachis hypogaea HOM05D003555 ORTHO05D004542 4.4e-89 332.4 394 46.2
FvH4_6g54180 Fragaria vesca HOM05D003555 ORTHO05D004542 4.4e-89 332.4 371 46.4
Potri.001G322500 Populus trichocarpa HOM05D003555 ORTHO05D004542 4.4e-89 332.4 371 47.2
SalBow1G4818 Salvia bowleyana HOM05D003555 ORTHO05D004542 4.4e-89 332.4 370 45.7
Potri.017G061100 Populus trichocarpa HOM05D003555 ORTHO05D004542 5.8e-89 332.0 371 45.8
vmacro19161 Vaccinium macrocarpon HOM05D003555 ORTHO05D004542 5.8e-89 332.0 369 46.3
arahy.Tifrunner.gnm1.ann1.HQ0MCX Arachis hypogaea HOM05D003555 ORTHO05D004542 7.6e-89 331.6 392 46.2
Dinv23202 Davidia involucrata HOM05D003555 ORTHO05D004542 7.6e-89 331.6 369 45.5
FAN09G3428 Fragaria x ananassa HOM05D003555 ORTHO05D004542 7.6e-89 331.6 372 46.2
Sed0000891 Sechium edule HOM05D003555 ORTHO05D004542 7.6e-89 331.6 371 45.8
GSVIVG01008626001 Vitis vinifera HOM05D003555 ORTHO05D004542 7.6e-89 331.6 370 46.2
Aa31LG1G1920 Aethionema arabicum HOM05D003555 ORTHO05D004542 9.9e-89 331.3 402 43.8
Ah.07g207280 Amaranthus hybridus HOM05D003555 ORTHO05D004542 9.9e-89 331.3 370 45.4
BolC8t52247H Brassica oleracea HOM05D003555 ORTHO05D004542 9.9e-89 331.3 367 46.6
Lj5A90G23 Lonicera japonica HOM05D003555 ORTHO05D004542 9.9e-89 331.3 370 45.9
Gohir.A05G334700 Gossypium hirsutum HOM05D003555 ORTHO05D004542 1.7e-88 330.5 372 46.5
MSTRG.11256 Avicennia marina HOM05D003555 ORTHO05D004542 2.2e-88 330.1 370 45.9
TAR622G0101 Trochodendron aralioides HOM05D003555 ORTHO05D004542 2.9e-88 329.7 370 46.8
Ah.13g068520 Amaranthus hybridus HOM05D003555 ORTHO05D004542 3.8e-88 329.3 370 45.4
MCO15G152 Micromonas commoda HOM05D003555 ORTHO05D004542 3.8e-88 329.3 379 44.3
TAR374G1733 Trochodendron aralioides HOM05D003555 ORTHO05D004542 8.4e-88 328.2 370 45.4
unitig_61.g26203 Utricularia gibba HOM05D003555 ORTHO05D004542 1.1e-87 327.8 370 44.6
Actinidia36835 Actinidia chinensis HOM05D003555 ORTHO05D004542 1.9e-87 327.0 369 45.8
Oeu058121.1 Olea europaea HOM05D003555 ORTHO05D004542 3.2e-87 326.2 373 46.4
Duzib147G0304 Durio zibethinus HOM05D003555 ORTHO05D004542 4.2e-87 325.9 370 45.7
Nn4g22182 Nelumbo nucifera HOM05D003555 ORTHO05D004542 4.2e-87 325.9 369 46.6
DCAR_021412 Daucus carota HOM05D003555 ORTHO05D004542 7.1e-87 325.1 370 44.3
Lsat_1_v5_gn_4_84120 Lactuca sativa HOM05D003555 ORTHO05D004542 9.3e-87 324.7 335 47.8
Hma1.2p1_1187F.1_g265140 Hydrangea macrophylla HOM05D003555 ORTHO05D004542 2.1e-86 323.6 369 43.9
Manes.11G078200 Manihot esculenta HOM05D003555 ORTHO05D004542 2.1e-86 323.6 338 48.5
Psat0s1497g0040 Pisum sativum HOM05D003555 ORTHO05D004542 1.3e-85 320.9 333 48.6
Zm00001eb163710 Zea mays HOM05D003555 ORTHO05D004542 3.0e-85 319.7 371 45.3
FAN14G0379 Fragaria x ananassa HOM05D003555 ORTHO05D004542 1.5e-84 317.4 371 45.3
Hund04735 Selenicereus undatus HOM05D003555 ORTHO05D004542 1.5e-84 317.4 400 41.5
Sc25g0000460 Simmondsia chinensis HOM05D003555 ORTHO05D004542 1.9e-84 317.0 332 47.0
FAN02G1454 Fragaria x ananassa HOM05D003555 ORTHO05D004542 3.3e-84 316.2 371 44.5
FAN05G2121 Fragaria x ananassa HOM05D003555 ORTHO05D004542 3.3e-84 316.2 371 45.3
COL.COLO4_13344 Corchorus olitorius HOM05D003555 ORTHO05D004542 7.3e-84 315.1 333 47.7
Nn5g27103 Nelumbo nucifera HOM05D003555 ORTHO05D004542 9.6e-84 314.7 332 48.8
MBI07_g40357_MAGBIO Magnolia biondii HOM05D003555 ORTHO05D004542 4.0e-82 309.3 369 44.7
Actinidia18318 Actinidia chinensis HOM05D003555 ORTHO05D004542 5.3e-82 308.9 327 48.0
AagrBONN_evm.TU.Sc2ySwM_228.2553 Anthoceros agrestis HOM05D003555 ORTHO05D004542 3.4e-81 306.2 362 44.8
PRCOL_00003348 Prasinoderma coloniale HOM05D003555 ORTHO05D004542 4.5e-81 305.8 371 42.0
Haze_14935 Corylus avellana HOM05D003555 ORTHO05D004542 9.9e-81 304.7 432 40.0
Zm00001eb297260 Zea mays HOM05D003555 ORTHO05D004542 1.4e-79 300.8 314 49.0
Sc13g0008590 Simmondsia chinensis HOM05D003555 ORTHO05D004542 5.4e-79 298.9 332 45.2
SGA_v2.0_scaffold14G07035 Striga asiatica HOM05D003555 ORTHO05D004542 5.4e-79 298.9 372 43.3
Nn3g16313 Nelumbo nucifera HOM05D003555 ORTHO05D004542 7.1e-79 298.5 368 43.5
ECA246G0182 Erigeron canadensis HOM05D003555 ORTHO05D004542 1.6e-78 297.4 311 46.9
Rhsim08G0195300 Rhododendron simsii HOM05D003555 ORTHO05D004542 2.1e-78 297.0 448 38.2
Actinidia25536 Actinidia chinensis HOM05D003555 ORTHO05D004542 3.5e-78 296.2 312 48.4
Ca_08125_v3 Cicer arietinum L. HOM05D003555 ORTHO05D004542 3.5e-78 296.2 373 43.7
Sabra16G0204700 Salix brachista HOM05D003555 ORTHO05D004542 5.1e-77 292.4 341 45.7
CDE05G1333 Ceratophyllum demersum HOM05D003555 ORTHO05D004542 4.3e-76 289.3 369 42.5
Pp3c9_8980 Physcomitrium patens HOM05D003555 ORTHO05D004542 2.8e-75 286.6 360 42.8
CBR_g724 Chara braunii HOM05D003555 ORTHO05D004542 3.5e-70 269.6 274 48.2
Lj9A484G61 Lonicera japonica HOM05D003555 ORTHO05D004542 1.8e-69 267.3 340 41.2
Cpa.g.sc70.83 Carica papaya HOM05D003555 ORTHO05D004542 3.0e-69 266.5 285 46.7
Lsat_1_v5_gn_6_50360 Lactuca sativa HOM05D003555 ORTHO05D004542 3.3e-68 263.1 291 46.7
Sabra17G0054300 Salix brachista HOM05D003555 ORTHO05D004542 6.9e-66 255.4 285 45.6
HPP92_022913 Vanilla planifolia HOM05D003555 ORTHO05D004542 6.9e-66 255.4 285 45.6
Hma1.2p1_1187F.1_g265130 Hydrangea macrophylla HOM05D003555 ORTHO05D004542 2.6e-65 253.4 287 43.9
Nitab4.5_0007858g0030 Nicotiana tabacum HOM05D003555 ORTHO05D004542 2.7e-62 243.4 370 38.1
QL02p069938 Quercus lobata HOM05D003555 ORTHO05D004542 1.9e-60 237.3 369 38.5
Gorai.007G072500 Gossypium raimondii HOM05D003555 ORTHO05D004542 2.5e-60 236.9 247 48.6
HanXRQChr09g0273581 Helianthus annuus HOM05D003555 ORTHO05D004542 1.0e-56 224.9 294 41.5
CSS0036109 Camellia sinensis var. sinensis HOM05D003555 ORTHO05D004542 9.4e-55 218.4 325 40.6
AUR62021202 Chenopodium quinoa HOM05D003555 ORTHO05D004542 4.1e-50 203.0 240 43.3
Lsat_1_v5_gn_5_10760 Lactuca sativa HOM05D003555 ORTHO05D004542 1.3e-48 198.0 270 41.1
Actinidia08900 Actinidia chinensis HOM05D003555 ORTHO05D004542 8.5e-48 195.3 369 34.7
Nitab4.5_0005207g0040 Nicotiana tabacum HOM05D003555 ORTHO05D004542 1.4e-47 194.5 205 48.8
Eucgr.G01949 Eucalyptus grandis HOM05D003555 ORTHO05D004542 1.9e-47 194.1 207 48.3
Haze_27306 Corylus avellana HOM05D003555 ORTHO05D163602 2.6e-44 183.7 292 38.0
Oeu058117.1 Olea europaea HOM05D003555 ORTHO05D004542 1.3e-40 171.4 313 36.1
Cfa026601 Carpinus fangiana HOM05D003555 ORTHO05D123537 6.5e-40 169.1 347 29.7
FAN09G3010 Fragaria x ananassa HOM05D003555 ORTHO05D004542 2.7e-30 137.1 185 42.2
THA.LOC104805959 Tarenaya hassleriana HOM05D003555 ORTHO05D022543 9.4e-23 112.1 130 40.8
Hma1.2p1_0403F.1_g145240 Hydrangea macrophylla HOM05D003555 ORTHO05D004542 6.1e-14 82.8 133 36.8
Nitab4.5_0005207g0030 Nicotiana tabacum HOM05D003555 ORTHO05D022543 1.8e-13 81.3 79 46.8
Eucgr.G01948 Eucalyptus grandis HOM05D003555 ORTHO05D022543 2.3e-13 80.9 67 56.7
BcaB01g02330 Brassica carinata HOM05D003555 ORTHO05D002990 3.0e-13 80.5 230 30.9
MBI07_g36274_MAGBIO Magnolia biondii HOM05D003555 ORTHO05D022543 1.5e-07 61.6 63 47.6
VMungo0331G0161 Vigna mungo HOM05D003555 ORTHO05D004542 1.9e-07 61.2 72 41.7
Glyma.01G064050 Glycine max HOM05D003555 ORTHO05D022543 9.5e-07 58.9 48 56.2
VMungo0464G1180 Vigna mungo HOM05D003555 ORTHO05D004542 8.0e-06 55.8 81 37.0


User provided reference genes

Program Settings