Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre05.g245150 Chlamydomonas reinhardtii HOM05D005123 ORTHO05D008312 6.7e-230 800.4 432 100.0
AagrBONN_evm.TU.Sc2ySwM_362.372 Anthoceros agrestis HOM05D006828 ORTHO05D008312 1.2e-21 108.6 408 25.7
COL.COLO4_07047 Corchorus olitorius HOM05D006828 ORTHO05D008312 1.2e-18 98.6 410 26.1
Sabra16G0296600 Salix brachista HOM05D006828 ORTHO05D008312 1.8e-17 94.7 416 24.5
Prupe.4G143800 Prunus persica HOM05D006828 ORTHO05D008312 4.0e-17 93.6 414 24.9
ATR1098G081 Amborella trichopoda HOM05D004490 ORTHO05D008312 5.2e-17 93.2 417 24.7
Mapoly0153s0014 Marchantia polymorpha HOM05D006828 ORTHO05D008312 5.2e-17 93.2 420 26.7
Potri.001G438500 Populus trichocarpa HOM05D006828 ORTHO05D008312 1.2e-16 92.0 414 24.6
Duzib187G1012 Durio zibethinus HOM05D006828 ORTHO05D008312 2.0e-16 91.3 413 25.4
MCO11G331 Micromonas commoda HOM05D005123 ORTHO05D008312 2.0e-16 91.3 443 28.0
Aqoxy4G00446 Aquilegia oxysepala HOM05D006828 ORTHO05D008312 3.4e-16 90.5 422 23.7
SGA_v2.0_scaffold49G18167 Striga asiatica HOM05D006828 ORTHO05D008312 3.4e-16 90.5 411 25.3
Pp3c5_21370 Physcomitrium patens HOM05D006828 ORTHO05D008312 4.4e-16 90.1 217 31.8
CANSAT56G3493 Cannabis sativa HOM05D006828 ORTHO05D008312 9.9e-16 89.0 422 24.4
MD05G1215100 Malus domestica HOM05D006828 ORTHO05D008312 8.4e-15 85.9 413 24.9
Ah.06g187350 Amaranthus hybridus HOM05D006828 ORTHO05D008312 1.4e-14 85.1 419 24.6
Solyc01g097160.3 Solanum lycopersicum HOM05D005123 ORTHO05D006532 2.4e-14 84.3 409 25.7
Sopen01g040830 Solanum pennellii HOM05D005123 ORTHO05D006532 2.4e-14 84.3 409 25.7
Cre03.g207150 Chlamydomonas reinhardtii HOM05D005123 ORTHO05D006532 7.1e-14 82.8 442 24.0
Nn7g37698 Nelumbo nucifera HOM05D006828 ORTHO05D008312 9.3e-14 82.4 407 24.1
FAN16G1914 Fragaria x ananassa HOM05D006828 ORTHO05D008312 2.1e-13 81.3 438 23.5
arahy.Tifrunner.gnm1.ann1.01P7ER Arachis hypogaea HOM05D005123 ORTHO05D006532 4.6e-13 80.1 401 22.7
PGSC0003DMG400027514 Solanum tuberosum HOM05D005123 ORTHO05D006532 6.0e-13 79.7 409 25.4
arahy.Tifrunner.gnm1.ann1.9VED02 Arachis hypogaea HOM05D005123 ORTHO05D006532 3.0e-12 77.4 401 22.4
ATR0665G099 Amborella trichopoda HOM05D005123 ORTHO05D006532 3.9e-12 77.0 402 23.1
Carub.0001s4459 Capsella rubella HOM05D006828 ORTHO05D008312 8.7e-12 75.9 215 27.9
FAN21G2990 Fragaria x ananassa HOM05D006828 ORTHO05D008312 8.7e-12 75.9 224 27.7
Zm00001eb059780 Zea mays HOM05D006828 ORTHO05D008312 8.7e-12 75.9 223 30.5
A05p17190 Brassica napus HOM05D006828 ORTHO05D008312 1.1e-11 75.5 215 27.0
Os03g0784000 Oryza sativa ssp. japonica HOM05D006828 ORTHO05D008312 1.1e-11 75.5 223 30.5
TPR.G6919 Trifolium pratense HOM05D005123 ORTHO05D006532 1.1e-11 75.5 415 23.4
C06p16330 Brassica napus HOM05D006828 ORTHO05D008312 1.5e-11 75.1 215 27.4
BolC6t36833H Brassica oleracea HOM05D006828 ORTHO05D008312 1.5e-11 75.1 215 27.4
vmacro11651 Vaccinium macrocarpon HOM05D006828 ORTHO05D008312 1.5e-11 75.1 420 24.5
BraA05t20621Z Brassica rapa HOM05D006828 ORTHO05D008312 1.9e-11 74.7 215 27.0
BcaC08g44230 Brassica carinata HOM05D006828 ORTHO05D008312 3.3e-11 73.9 215 26.5
FvH4_3g16060 Fragaria vesca HOM05D006828 ORTHO05D008312 3.3e-11 73.9 221 28.1
Sed0017518 Sechium edule HOM05D006828 ORTHO05D008312 4.3e-11 73.6 215 27.4
BcaB02g10788 Brassica carinata HOM05D006828 ORTHO05D008312 5.6e-11 73.2 215 26.0
CSS0004598 Camellia sinensis var. sinensis HOM05D006828 ORTHO05D008312 7.3e-11 72.8 411 23.6
ClCG07G010690 Citrullus lanatus HOM05D006828 ORTHO05D008312 7.3e-11 72.8 214 28.0
unitig_0.g977 Utricularia gibba HOM05D006828 ORTHO05D008312 9.6e-11 72.4 405 23.5
PRCOL_00004314 Prasinoderma coloniale HOM05D006828 ORTHO05D008312 1.3e-10 72.0 477 24.5
CBR_g61470 Chara braunii HOM05D006828 ORTHO05D008312 2.1e-10 71.2 232 28.0
CsaV3_4G007610 Cucumis sativus L. HOM05D006828 ORTHO05D008312 2.1e-10 71.2 214 27.1
Medtr7g115310 Medicago truncatula HOM05D005123 ORTHO05D006532 2.1e-10 71.2 407 22.4
AT1G56000 Arabidopsis thaliana HOM05D006828 ORTHO05D008312 2.8e-10 70.9 215 26.0
Sp1g41610 Schrenkiella parvula HOM05D006828 ORTHO05D008312 2.8e-10 70.9 212 27.4
Thhalv10011583m.g Eutrema salsugineum HOM05D006828 ORTHO05D008312 3.6e-10 70.5 219 26.5
Thecc.07G157000 Theobroma cacao HOM05D006828 ORTHO05D008312 4.8e-10 70.1 219 28.8
AL1G64100 Arabidopsis lyrata HOM05D006828 ORTHO05D008312 6.2e-10 69.7 212 27.4
CARHR045730 Cardamine hirsuta HOM05D006828 ORTHO05D008312 8.1e-10 69.3 215 26.5
Gohir.A13G153300 Gossypium hirsutum HOM05D006828 ORTHO05D008312 1.1e-09 68.9 223 27.8
SEGI_20609 Sequoiadendron giganteum HOM05D006828 ORTHO05D008312 1.1e-09 68.9 188 29.8
THA.LOC104815709 Tarenaya hassleriana HOM05D006828 ORTHO05D008312 1.1e-09 68.9 219 26.5
QL03p027727 Quercus lobata HOM05D005123 ORTHO05D006532 1.8e-09 68.2 259 24.3
AL1G64240 Arabidopsis lyrata HOM05D006828 ORTHO05D008312 2.4e-09 67.8 214 25.7
Nitab4.5_0010168g0020 Nicotiana tabacum HOM05D005123 ORTHO05D006532 2.4e-09 67.8 439 24.6
PSO063G6470 Papaver somniferum HOM05D005123 ORTHO05D006532 4.0e-09 67.0 253 24.1
PSO170G0405 Papaver somniferum HOM05D005123 ORTHO05D006532 6.9e-09 66.2 266 24.8
Eucgr.H04317 Eucalyptus grandis HOM05D005123 ORTHO05D006532 9.0e-09 65.9 232 27.6
Nitab4.5_0002247g0060 Nicotiana tabacum HOM05D005123 ORTHO05D006532 9.0e-09 65.9 171 29.2
Atru.BG.126.p Acer truncatum HOM05D005123 ORTHO05D006532 1.2e-08 65.5 412 24.5
TAR626G1868 Trochodendron aralioides HOM05D006828 ORTHO05D008312 1.5e-08 65.1 219 26.9
Ca_09430_v3 Cicer arietinum L. HOM05D005123 ORTHO05D006532 2.0e-08 64.7 234 26.1
Gohir.D13G157900 Gossypium hirsutum HOM05D006828 ORTHO05D008312 2.6e-08 64.3 222 26.6
Gorai.013G178600 Gossypium raimondii HOM05D006828 ORTHO05D008312 2.6e-08 64.3 222 26.6
MD04G1226700 Malus domestica HOM05D005123 ORTHO05D006532 3.4e-08 63.9 150 28.7
Phvul.006G102800 Phaseolus vulgaris HOM05D005123 ORTHO05D006532 3.4e-08 63.9 233 24.5
CSS0014237 Camellia sinensis var. sinensis HOM05D005123 ORTHO05D006532 4.4e-08 63.5 227 27.8
CSS0032730 Camellia sinensis var. sinensis HOM05D005123 ORTHO05D006532 4.4e-08 63.5 227 27.8
Glyma.19G245900 Glycine max HOM05D005123 ORTHO05D006532 4.4e-08 63.5 233 24.9
Psat0s169g0040 Pisum sativum HOM05D005123 ORTHO05D006532 4.4e-08 63.5 233 24.0
Zm00001eb030960 Zea mays HOM05D005123 ORTHO05D006532 4.4e-08 63.5 408 22.1
FAN12G0908 Fragaria x ananassa HOM05D005123 ORTHO05D006532 7.6e-08 62.8 188 25.5
Hma1.2p1_0817F.1_g223190 Hydrangea macrophylla HOM05D005123 ORTHO05D006532 7.6e-08 62.8 235 27.7
VMungo0540G0367 Vigna mungo HOM05D005123 ORTHO05D006532 7.6e-08 62.8 194 25.8
Actinidia18366 Actinidia chinensis HOM05D005123 ORTHO05D006532 1.3e-07 62.0 232 27.2
Lj8C186T3 Lonicera japonica HOM05D006828 ORTHO05D008312 1.3e-07 62.0 214 26.6
Atru.chr2.1852 Acer truncatum HOM05D006828 ORTHO05D008312 1.7e-07 61.6 219 27.9
FvH4_4g17540 Fragaria vesca HOM05D005123 ORTHO05D006532 1.7e-07 61.6 188 25.5
Prupe.6G345400 Prunus persica HOM05D005123 ORTHO05D006532 1.7e-07 61.6 229 24.5
PGR004G1863 Punica granatum HOM05D005123 ORTHO05D006532 1.7e-07 61.6 220 26.8
Cfa006396 Carpinus fangiana HOM05D005123 ORTHO05D006532 2.2e-07 61.2 226 24.8
MBI11_g20622_MAGBIO Magnolia biondii HOM05D005123 ORTHO05D006532 2.2e-07 61.2 167 28.7
RcHm_v2.0_Chr4g0421451 Rosa chinensis HOM05D005123 ORTHO05D006532 2.2e-07 61.2 188 25.0
AagrBONN_evm.TU.Sc2ySwM_228.1429 Anthoceros agrestis HOM05D005123 ORTHO05D006532 2.9e-07 60.8 231 27.7
CANSAT54G2420 Cannabis sativa HOM05D005123 ORTHO05D006532 2.9e-07 60.8 232 28.0
Dinv17936 Davidia involucrata HOM05D005123 ORTHO05D006532 2.9e-07 60.8 234 24.4
MCO15G267 Micromonas commoda HOM05D005123 ORTHO05D006532 2.9e-07 60.8 191 29.3
Peaxi162Scf00282g00718 Petunia axillaris HOM05D005123 ORTHO05D006532 2.9e-07 60.8 188 26.6
Aqoxy4G00445 Aquilegia oxysepala HOM05D006828 ORTHO05D008312 3.8e-07 60.5 64 48.4
Cpa.g.sc13.157 Carica papaya HOM05D006828 ORTHO05D008312 3.8e-07 60.5 181 29.3
GSVIVG01036232001 Vitis vinifera HOM05D005123 ORTHO05D006532 3.8e-07 60.5 150 28.7
Cpa.g.sc736.2 Carica papaya HOM05D005123 ORTHO05D006532 4.9e-07 60.1 228 24.1
THA.LOC104802845 Tarenaya hassleriana HOM05D005123 ORTHO05D006532 4.9e-07 60.1 406 22.4
Potri.005G055800 Populus trichocarpa HOM05D005123 ORTHO05D006532 6.4e-07 59.7 235 24.7
Duzib177G0775 Durio zibethinus HOM05D005123 ORTHO05D006532 1.1e-06 58.9 232 25.4
TAR365G0219 Trochodendron aralioides HOM05D005123 ORTHO05D006532 1.1e-06 58.9 238 23.9
FAN07G0296 Fragaria x ananassa HOM05D005123 ORTHO05D006532 1.9e-06 58.2 188 24.5
FAN12G0393 Fragaria x ananassa HOM05D005123 ORTHO05D006532 1.9e-06 58.2 188 24.5
Os12g0597400 Oryza sativa ssp. japonica HOM05D005123 ORTHO05D006532 1.9e-06 58.2 426 21.1
Pp3c3_15330 Physcomitrium patens HOM05D005123 ORTHO05D006532 1.9e-06 58.2 227 26.0
SGA_v2.0_scaffold80G25897 Striga asiatica HOM05D005123 ORTHO05D006532 1.9e-06 58.2 150 26.0
CAN.G134.75 Capsicum annuum HOM05D005123 ORTHO05D006532 2.4e-06 57.8 217 27.6
Lsat_1_v5_gn_9_88160 Lactuca sativa HOM05D006828 ORTHO05D008312 2.4e-06 57.8 163 28.8
Lalb_Chr18g0043951 Lupinus albus HOM05D005123 ORTHO05D006532 2.4e-06 57.8 233 24.0
Mapoly0079s0067 Marchantia polymorpha HOM05D005123 ORTHO05D006532 2.4e-06 57.8 217 27.2
Migut.N01919 Erythranthe guttata HOM05D005123 ORTHO05D006532 3.2e-06 57.4 157 26.8
Medtr2g064620 Medicago truncatula HOM05D006828 ORTHO05D008312 3.2e-06 57.4 69 43.5
Sc16g0003470 Simmondsia chinensis HOM05D006828 ORTHO05D008312 3.2e-06 57.4 110 32.7
Gohir.D08G232600 Gossypium hirsutum HOM05D005123 ORTHO05D006532 4.2e-06 57.0 239 25.1
Lj1g0023983 Lotus japonicus HOM05D005123 ORTHO05D006532 5.4e-06 56.6 206 25.2
Solyc10g005620.3 Solanum lycopersicum HOM05D006828 ORTHO05D008312 7.1e-06 56.2 64 42.2
Sopen10g001590 Solanum pennellii HOM05D006828 ORTHO05D008312 7.1e-06 56.2 64 42.2
PGSC0003DMG400011238 Solanum tuberosum HOM05D006828 ORTHO05D008312 7.1e-06 56.2 64 42.2
EL10Ac4g08543 Beta vulgaris HOM05D006828 ORTHO05D008312 9.3e-06 55.8 122 31.1
Psat1g002280 Pisum sativum HOM05D006828 ORTHO05D008312 9.3e-06 55.8 69 42.0
Sabra05G0048700 Salix brachista HOM05D005123 ORTHO05D006532 9.3e-06 55.8 235 23.8


User provided reference genes

Program Settings