Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre05.g243150 Chlamydomonas reinhardtii HOM05D003461 ORTHO05D004386 0.0e+00 2879.0 2648 100.0
MCO11G459 Micromonas commoda HOM05D003461 ORTHO05D004386 3.3e-53 216.1 721 27.2
CBR_g20101 Chara braunii HOM05D003461 ORTHO05D004386 1.6e-44 187.2 686 23.9
Mapoly0004s0170 Marchantia polymorpha HOM05D003461 ORTHO05D004386 6.9e-43 181.8 679 25.0
Hund28667 Selenicereus undatus HOM05D003461 ORTHO05D004386 1.7e-41 177.2 676 24.7
Hund28681 Selenicereus undatus HOM05D003461 ORTHO05D004386 1.7e-41 177.2 676 24.7
HanXRQChr08g0221141 Helianthus annuus HOM05D003461 ORTHO05D004386 9.3e-40 171.4 676 24.7
Pp3c4_150 Physcomitrium patens HOM05D003461 ORTHO05D004386 9.3e-40 171.4 682 23.9
Ah.12g063310 Amaranthus hybridus HOM05D003461 ORTHO05D004386 1.2e-39 171.0 676 24.4
Aa31sc76G80 Aethionema arabicum HOM05D003461 ORTHO05D004386 1.6e-39 170.6 680 24.0
Lsat_1_v5_gn_5_45581 Lactuca sativa HOM05D003461 ORTHO05D004386 1.6e-39 170.6 676 25.1
Duzib150G1527 Durio zibethinus HOM05D003461 ORTHO05D004386 2.1e-39 170.2 729 24.4
THA.LOC104819890 Tarenaya hassleriana HOM05D003461 ORTHO05D004386 2.7e-39 169.9 676 23.4
Cpa.g.sc91.7 Carica papaya HOM05D003461 ORTHO05D004386 7.9e-39 168.3 676 23.7
unitig_747.g21880 Utricularia gibba HOM05D003461 ORTHO05D004386 7.9e-39 168.3 676 24.6
EL10Ac2g02534 Beta vulgaris HOM05D003461 ORTHO05D004386 1.3e-38 167.5 676 24.1
CARHR115590 Cardamine hirsuta HOM05D003461 ORTHO05D004386 1.3e-38 167.5 679 23.3
Gohir.A05G010700 Gossypium hirsutum HOM05D003461 ORTHO05D004386 1.3e-38 167.5 676 24.1
Gohir.D05G011400 Gossypium hirsutum HOM05D003461 ORTHO05D004386 1.3e-38 167.5 676 24.1
Gorai.009G011800 Gossypium raimondii HOM05D003461 ORTHO05D004386 1.8e-38 167.2 676 24.1
BcaC02g08333 Brassica carinata HOM05D003461 ORTHO05D004386 3.0e-38 166.4 679 23.4
Migut.A00272 Erythranthe guttata HOM05D003461 ORTHO05D004386 3.0e-38 166.4 676 23.5
Lj7C712G4 Lonicera japonica HOM05D003461 ORTHO05D004386 3.0e-38 166.4 676 24.1
Actinidia14639 Actinidia chinensis HOM05D003461 ORTHO05D004386 3.9e-38 166.0 683 23.9
COL.COLO4_24068 Corchorus olitorius HOM05D003461 ORTHO05D004386 3.9e-38 166.0 677 23.9
BcaB06g28084 Brassica carinata HOM05D003461 ORTHO05D004386 5.1e-38 165.6 679 23.4
Carub.0004s0545 Capsella rubella HOM05D003461 ORTHO05D004386 5.1e-38 165.6 679 23.3
DCAR_006261 Daucus carota HOM05D003461 ORTHO05D004386 5.1e-38 165.6 676 23.8
Thhalv10000008m.g Eutrema salsugineum HOM05D003461 ORTHO05D004386 6.7e-38 165.2 679 23.4
Gohir.A06G048100 Gossypium hirsutum HOM05D003461 ORTHO05D004386 8.7e-38 164.9 676 23.8
Gorai.010G053900 Gossypium raimondii HOM05D003461 ORTHO05D004386 8.7e-38 164.9 676 23.8
Ciclev10007226m.g Citrus clementina HOM05D003461 ORTHO05D004386 1.1e-37 164.5 676 23.2
Dinv35880 Davidia involucrata HOM05D003461 ORTHO05D004386 1.1e-37 164.5 676 23.4
Thecc.09G143900 Theobroma cacao HOM05D003461 ORTHO05D004386 1.5e-37 164.1 676 24.4
AL4G17260 Arabidopsis lyrata HOM05D003461 ORTHO05D004386 1.9e-37 163.7 679 23.0
C04p55600 Brassica napus HOM05D003461 ORTHO05D004386 1.9e-37 163.7 680 23.5
BolC4t27084H Brassica oleracea HOM05D003461 ORTHO05D004386 1.9e-37 163.7 680 23.5
AUR62024833 Chenopodium quinoa HOM05D003461 ORTHO05D004386 2.5e-37 163.3 676 24.0
Gohir.D06G048050 Gossypium hirsutum HOM05D003461 ORTHO05D004386 2.5e-37 163.3 676 23.7
AT2G25660 Arabidopsis thaliana HOM05D003461 ORTHO05D004386 7.4e-37 161.8 679 23.0
A04p19870 Brassica napus HOM05D003461 ORTHO05D004386 7.4e-37 161.8 680 23.4
BraA04t17575Z Brassica rapa HOM05D003461 ORTHO05D004386 7.4e-37 161.8 680 23.4
Cc08_g08280 Coffea canephora HOM05D003461 ORTHO05D004386 9.6e-37 161.4 676 23.1
Dinv30215 Davidia involucrata HOM05D003461 ORTHO05D004386 9.6e-37 161.4 676 23.7
Oeu019417.3 Olea europaea HOM05D003461 ORTHO05D004386 9.6e-37 161.4 676 23.8
Actinidia15711 Actinidia chinensis HOM05D003461 ORTHO05D004386 1.3e-36 161.0 683 23.4
Duzib168G0147 Durio zibethinus HOM05D003461 ORTHO05D004386 1.3e-36 161.0 676 24.0
CiPaw.07G217600 Carya illinoinensis HOM05D003461 ORTHO05D004386 2.8e-36 159.8 677 23.0
Sp4g05280 Schrenkiella parvula HOM05D003461 ORTHO05D004386 2.8e-36 159.8 681 23.5
Glyma.14G129400 Glycine max HOM05D003461 ORTHO05D004386 4.8e-36 159.1 676 23.2
Aqoxy7G01835 Aquilegia oxysepala HOM05D003461 ORTHO05D004386 1.1e-35 157.9 727 23.0
CAN.G21.14 Capsicum annuum HOM05D003461 ORTHO05D004386 1.1e-35 157.9 678 22.9
PGR044G2079 Punica granatum HOM05D003461 ORTHO05D004386 1.1e-35 157.9 676 22.9
SGA_v2.0_scaffold27G11498 Striga asiatica HOM05D003461 ORTHO05D004386 1.4e-35 157.5 742 23.5
ECA240G1832 Erigeron canadensis HOM05D003461 ORTHO05D004386 1.8e-35 157.1 749 23.9
Sopen08g021790 Solanum pennellii HOM05D003461 ORTHO05D004386 1.8e-35 157.1 678 23.0
Atru.chr7.2323 Acer truncatum HOM05D003461 ORTHO05D004386 2.4e-35 156.8 747 22.6
ATR0037G074 Amborella trichopoda HOM05D003461 ORTHO05D004386 2.4e-35 156.8 680 22.9
Nitab4.5_0000125g0130 Nicotiana tabacum HOM05D003461 ORTHO05D004386 2.4e-35 156.8 730 23.0
Sc09g0008870 Simmondsia chinensis HOM05D003461 ORTHO05D004386 2.4e-35 156.8 676 23.7
AUR62032384 Chenopodium quinoa HOM05D003461 ORTHO05D004386 3.1e-35 156.4 747 22.9
SMO347G0057 Selaginella moellendorffii HOM05D003461 ORTHO05D004386 3.1e-35 156.4 681 22.8
FAN24G1347 Fragaria x ananassa HOM05D003461 ORTHO05D004386 4.0e-35 156.0 743 23.6
Nitab4.5_0009600g0030 Nicotiana tabacum HOM05D003461 ORTHO05D004386 4.0e-35 156.0 678 23.2
Phvul.001G055800 Phaseolus vulgaris HOM05D003461 ORTHO05D004386 4.0e-35 156.0 677 23.5
TAR383G0906 Trochodendron aralioides HOM05D003461 ORTHO05D004386 4.0e-35 156.0 675 23.0
FAN15G0070 Fragaria x ananassa HOM05D003461 ORTHO05D004386 5.3e-35 155.6 743 23.6
FAN27G2808 Fragaria x ananassa HOM05D003461 ORTHO05D004386 5.3e-35 155.6 743 23.6
MD15G1115200 Malus domestica HOM05D003461 ORTHO05D004386 5.3e-35 155.6 681 23.6
CSS0003133 Camellia sinensis var. sinensis HOM05D003461 ORTHO05D004386 6.9e-35 155.2 676 23.1
ClCG05G017220 Citrullus lanatus HOM05D003461 ORTHO05D004386 6.9e-35 155.2 677 22.6
Glyma.17G204000 Glycine max HOM05D003461 ORTHO05D004386 6.9e-35 155.2 676 22.6
MD08G1135800 Malus domestica HOM05D003461 ORTHO05D004386 6.9e-35 155.2 681 23.5
FvH4_2g30180 Fragaria vesca HOM05D003461 ORTHO05D004386 1.5e-34 154.1 743 23.4
CANSAT01G0438 Cannabis sativa HOM05D003461 ORTHO05D004386 4.5e-34 152.5 728 21.7
HPP92_015152 Vanilla planifolia HOM05D003461 ORTHO05D004386 4.5e-34 152.5 678 23.2
SalBow4G0560 Salvia bowleyana HOM05D003461 ORTHO05D004386 7.6e-34 151.8 676 23.2
TWI34G1710 Tripterygium wilfordii HOM05D003461 ORTHO05D004386 7.6e-34 151.8 676 22.8
Manes.13G069700 Manihot esculenta HOM05D003461 ORTHO05D004386 9.9e-34 151.4 677 22.9
Sed0017351 Sechium edule HOM05D003461 ORTHO05D004386 2.2e-33 150.2 677 24.7
Eucgr.C02859 Eucalyptus grandis HOM05D003461 ORTHO05D004386 3.8e-33 149.4 676 22.9
FAN20G1067 Fragaria x ananassa HOM05D003461 ORTHO05D004386 4.9e-33 149.1 743 23.3
Prupe.1G466400 Prunus persica HOM05D003461 ORTHO05D004386 4.9e-33 149.1 676 22.3
RcHm_v2.0_Chr6g0312731 Rosa chinensis HOM05D003461 ORTHO05D004386 4.9e-33 149.1 741 22.8
Haze_21625 Corylus avellana HOM05D003461 ORTHO05D004386 6.4e-33 148.7 751 22.5
GSVIVG01035727001 Vitis vinifera HOM05D003461 ORTHO05D004386 6.4e-33 148.7 681 22.5
Potri.018G034700 Populus trichocarpa HOM05D003461 ORTHO05D004386 1.4e-32 147.5 753 22.4
Sabra18G0035400 Salix brachista HOM05D003461 ORTHO05D004386 1.4e-32 147.5 749 22.8
Lj5g0000879 Lotus japonicus HOM05D003461 ORTHO05D004386 2.4e-32 146.7 678 22.9
Lalb_Chr11g0063991 Lupinus albus HOM05D003461 ORTHO05D004386 2.4e-32 146.7 713 21.6
PSO063G5065 Papaver somniferum HOM05D003461 ORTHO05D004386 2.4e-32 146.7 735 22.6
CDE07G0137 Ceratophyllum demersum HOM05D003461 ORTHO05D004386 4.2e-32 146.0 335 31.0
PSO782G2185 Papaver somniferum HOM05D003461 ORTHO05D004386 4.2e-32 146.0 735 22.4
Psat6g031040 Pisum sativum HOM05D003461 ORTHO05D004386 4.2e-32 146.0 676 22.5
Medtr1g010300 Medicago truncatula HOM05D003461 ORTHO05D004386 1.6e-31 144.1 676 22.2
Os01g0179400 Oryza sativa ssp. japonica HOM05D003461 ORTHO05D004386 1.6e-31 144.1 676 22.2
MELO3C003666.2 Cucumis melo HOM05D003461 ORTHO05D004386 2.1e-31 143.7 670 22.4
Nn2g11834 Nelumbo nucifera HOM05D003461 ORTHO05D004386 6.0e-31 142.1 750 21.6
TPR.G20094 Trifolium pratense HOM05D003461 ORTHO05D004386 1.8e-30 140.6 676 21.9
Zm00001eb122270 Zea mays HOM05D003461 ORTHO05D004386 3.0e-30 139.8 676 24.4
AL4G17180 Arabidopsis lyrata HOM05D003461 ORTHO05D004386 5.1e-30 139.0 335 29.6
Peaxi162Scf00105g00133 Petunia axillaris HOM05D003461 ORTHO05D004386 5.1e-30 139.0 335 30.1
CsaV3_3G046700 Cucumis sativus L. HOM05D003461 ORTHO05D004386 1.5e-29 137.5 677 21.7
arahy.Tifrunner.gnm1.ann1.3VS957 Arachis hypogaea HOM05D003461 ORTHO05D004386 1.9e-29 137.1 729 21.9
arahy.Tifrunner.gnm1.ann1.4R6GA4 Arachis hypogaea HOM05D003461 ORTHO05D004386 4.3e-29 136.0 728 22.7
Psat5g027760 Pisum sativum HOM05D003461 ORTHO05D004386 1.6e-28 134.0 708 23.2
TPR.G34693 Trifolium pratense HOM05D003461 ORTHO05D004386 2.4e-27 130.2 709 21.7
Solyc08g067860.2 Solanum lycopersicum HOM05D003461 ORTHO05D004386 1.5e-26 127.5 678 21.7
Medtr3g108080 Medicago truncatula HOM05D003461 ORTHO05D004386 5.8e-26 125.6 708 21.5
Glyma.04G072400 Glycine max HOM05D003461 ORTHO05D004386 7.1e-24 118.6 683 20.4
Lj1g0021913 Lotus japonicus HOM05D003461 ORTHO05D004386 9.3e-24 118.2 714 21.6
Rhsim07G0154200 Rhododendron simsii HOM05D003461 ORTHO05D004386 1.2e-23 117.9 713 21.0
AagrBONN_evm.TU.Sc2ySwM_228.5632 Anthoceros agrestis HOM05D003461 ORTHO05D004386 1.1e-21 111.3 589 21.9
SEGI_10354 Sequoiadendron giganteum HOM05D003461 ORTHO05D004386 9.7e-21 108.2 503 21.7
Glyma.06G073700 Glycine max HOM05D003461 ORTHO05D004386 2.2e-20 107.1 679 19.7
VMungo1309G1485 Vigna mungo HOM05D003461 ORTHO05D004386 1.1e-19 104.8 679 19.7
Zm00001eb088480 Zea mays HOM05D003461 ORTHO05D004386 1.7e-17 97.4 102 50.0
VMungo0647G2587 Vigna mungo HOM05D003461 ORTHO05D004386 2.2e-17 97.1 99 51.5
Ca_15696_v3 Cicer arietinum L. HOM05D003461 ORTHO05D004386 8.5e-17 95.1 322 25.8
VMungo0647G2469 Vigna mungo HOM05D003461 ORTHO05D004386 2.5e-16 93.6 505 23.8
Peaxi162Scf00105g01316 Petunia axillaris HOM05D003461 ORTHO05D004386 2.2e-12 80.5 589 19.2
Phvul.009G098100 Phaseolus vulgaris HOM05D003461 ORTHO05D004386 4.1e-11 76.3 603 18.9
Actinidia14640 Actinidia chinensis HOM05D003461 ORTHO05D004386 9.1e-11 75.1 571 19.1
CBR_g10864 Chara braunii HOM05D060360 ORTHO05D043628 1.2e-10 74.7 81 48.1
vmacro05447 Vaccinium macrocarpon HOM05D003461 ORTHO05D004386 3.8e-09 69.7 374 21.1
Gohir.D06G048151 Gossypium hirsutum HOM05D003461 ORTHO05D004386 1.1e-08 68.2 568 19.9
Zm00001eb305240 Zea mays HOM05D003461 ORTHO05D004386 2.5e-08 67.0 65 49.2
CDE07G1701 Ceratophyllum demersum HOM05D003461 ORTHO05D004386 5.5e-08 65.9 96 35.4
Gohir.D10G105800 Gossypium hirsutum HOM05D003461 ORTHO05D004386 1.8e-06 60.8 64 42.2
RcHm_v2.0_Chr4g0412921 Rosa chinensis HOM05D003461 ORTHO05D004386 5.1e-06 59.3 58 55.2


User provided reference genes

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