Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre05.g237600 Chlamydomonas reinhardtii HOM05D005847 ORTHO05D007143 0.0e+00 1562.7 983 100.0
AUR62007027 Chenopodium quinoa HOM05D005847 ORTHO05D007143 3.7e-26 124.8 163 45.4
AUR62019890 Chenopodium quinoa HOM05D005847 ORTHO05D007143 1.1e-25 123.2 164 45.1
Sp2g00130 Schrenkiella parvula HOM05D005847 ORTHO05D007143 2.4e-25 122.1 162 42.6
Hund18289 Selenicereus undatus HOM05D005847 ORTHO05D007143 2.4e-25 122.1 162 43.8
Cc08_g16520 Coffea canephora HOM05D005847 ORTHO05D007143 4.1e-25 121.3 170 40.6
Carub.0002s0014 Capsella rubella HOM05D005847 ORTHO05D007143 5.3e-25 120.9 162 41.4
Lj2A159T44 Lonicera japonica HOM05D005847 ORTHO05D007143 5.3e-25 120.9 183 40.4
Solyc08g082880.4 Solanum lycopersicum HOM05D005847 ORTHO05D007143 5.3e-25 120.9 162 43.2
Sopen08g031110 Solanum pennellii HOM05D005847 ORTHO05D007143 5.3e-25 120.9 162 43.2
VMungo1127G1163 Vigna mungo HOM05D005847 ORTHO05D007143 5.3e-25 120.9 182 41.2
PGSC0003DMG400012250 Solanum tuberosum HOM05D005847 ORTHO05D007143 7.0e-25 120.6 163 42.9
CAN.G567.67 Capsicum annuum HOM05D005847 ORTHO05D007143 1.6e-24 119.4 163 43.6
Thhalv10023366m.g Eutrema salsugineum HOM05D005847 ORTHO05D007143 2.0e-24 119.0 165 40.0
Lalb_Chr13g0298981 Lupinus albus HOM05D005847 ORTHO05D007143 2.0e-24 119.0 182 40.1
QL10p008953 Quercus lobata HOM05D005847 ORTHO05D007143 2.7e-24 118.6 168 42.3
THA.LOC104809314 Tarenaya hassleriana HOM05D005847 ORTHO05D007143 2.7e-24 118.6 183 38.3
Aqoxy5G04298 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 3.5e-24 118.2 183 38.3
ECA240G1801 Erigeron canadensis HOM05D005847 ORTHO05D007143 3.5e-24 118.2 181 38.7
AT1G64600 Arabidopsis thaliana HOM05D005847 ORTHO05D007143 5.9e-24 117.5 162 42.0
CiPaw.11G115200 Carya illinoinensis HOM05D005847 ORTHO05D007143 7.7e-24 117.1 183 41.5
Mapoly0031s0174 Marchantia polymorpha HOM05D005847 ORTHO05D007143 7.7e-24 117.1 195 37.9
Medtr8g040700 Medicago truncatula HOM05D005847 ORTHO05D007143 7.7e-24 117.1 182 38.5
Phvul.011G200000 Phaseolus vulgaris HOM05D005847 ORTHO05D007143 7.7e-24 117.1 182 39.6
Potri.001G086800 Populus trichocarpa HOM05D005847 ORTHO05D007143 7.7e-24 117.1 183 39.3
Aa31LG2G1600 Aethionema arabicum HOM05D005847 ORTHO05D007143 1.0e-23 116.7 182 36.8
AL2G10160 Arabidopsis lyrata HOM05D005847 ORTHO05D007143 1.0e-23 116.7 162 41.4
Haze_09129 Corylus avellana HOM05D005847 ORTHO05D007143 1.0e-23 116.7 182 40.1
Psat4g194080 Pisum sativum HOM05D005847 ORTHO05D007143 1.0e-23 116.7 181 40.3
Ciclev10019764m.g Citrus clementina HOM05D005847 ORTHO05D007143 1.3e-23 116.3 187 36.4
Cfa011951 Carpinus fangiana HOM05D005847 ORTHO05D007143 1.7e-23 115.9 182 40.1
HanXRQChr13g0415001 Helianthus annuus HOM05D005847 ORTHO05D007143 1.7e-23 115.9 161 41.0
RcHm_v2.0_Chr2g0164461 Rosa chinensis HOM05D005847 ORTHO05D007143 1.7e-23 115.9 174 38.5
PGR042G1950 Punica granatum HOM05D005847 ORTHO05D007143 2.2e-23 115.5 186 38.7
Glyma.13G191700 Glycine max HOM05D005847 ORTHO05D007143 2.9e-23 115.2 181 39.8
Nitab4.5_0002728g0010 Nicotiana tabacum HOM05D005847 ORTHO05D007143 3.8e-23 114.8 165 41.8
TWI81G0154 Tripterygium wilfordii HOM05D005847 ORTHO05D007143 3.8e-23 114.8 165 42.4
EL10Ac5g12470 Beta vulgaris HOM05D005847 ORTHO05D007143 5.0e-23 114.4 162 42.6
FvH4_5g11440 Fragaria vesca HOM05D005847 ORTHO05D007143 5.0e-23 114.4 174 37.9
FAN08G0147 Fragaria x ananassa HOM05D005847 ORTHO05D007143 5.0e-23 114.4 174 37.9
FAN13G1107 Fragaria x ananassa HOM05D005847 ORTHO05D007143 5.0e-23 114.4 174 37.9
FAN04G0204 Fragaria x ananassa HOM05D005847 ORTHO05D007143 6.5e-23 114.0 174 37.9
BcaB07g31478 Brassica carinata HOM05D005847 ORTHO05D007143 8.5e-23 113.6 162 42.6
DCAR_006499 Daucus carota HOM05D005847 ORTHO05D007143 8.5e-23 113.6 182 38.5
Migut.E00656 Erythranthe guttata HOM05D005847 ORTHO05D007143 8.5e-23 113.6 182 39.6
Gohir.D12G239600 Gossypium hirsutum HOM05D005847 ORTHO05D007143 8.5e-23 113.6 182 39.6
Gorai.008G256700 Gossypium raimondii HOM05D005847 ORTHO05D007143 8.5e-23 113.6 182 39.6
Thecc.03G224700 Theobroma cacao HOM05D005847 ORTHO05D007143 8.5e-23 113.6 183 38.8
TPR.G8535 Trifolium pratense HOM05D005847 ORTHO05D007143 8.5e-23 113.6 167 41.9
Duzib084G0923 Durio zibethinus HOM05D005847 ORTHO05D007143 1.1e-22 113.2 182 39.6
Gohir.A12G238500 Gossypium hirsutum HOM05D005847 ORTHO05D007143 1.1e-22 113.2 184 39.1
Lj1g0001744 Lotus japonicus HOM05D005847 ORTHO05D007143 1.1e-22 113.2 182 39.0
PSO017G1852 Papaver somniferum HOM05D005847 ORTHO05D007143 1.1e-22 113.2 180 39.4
GSVIVG01019613001 Vitis vinifera HOM05D005847 ORTHO05D007143 1.5e-22 112.8 163 42.3
BcaC04g22588 Brassica carinata HOM05D005847 ORTHO05D007143 1.9e-22 112.5 162 40.7
A09p14540 Brassica napus HOM05D005847 ORTHO05D007143 1.9e-22 112.5 162 40.7
C09p17640 Brassica napus HOM05D005847 ORTHO05D007143 1.9e-22 112.5 162 40.7
BolC9t54656H Brassica oleracea HOM05D005847 ORTHO05D007143 1.9e-22 112.5 162 40.7
BraA09t37102Z Brassica rapa HOM05D005847 ORTHO05D007143 1.9e-22 112.5 162 40.7
Aqoxy3G00691 Aquilegia oxysepala HOM05D005847 ORTHO05D007143 2.5e-22 112.1 168 41.1
FAN18G1068 Fragaria x ananassa HOM05D005847 ORTHO05D007143 2.5e-22 112.1 174 37.4
Os07g0297300 Oryza sativa ssp. japonica HOM05D005847 ORTHO05D007143 2.5e-22 112.1 187 35.3
Actinidia22190 Actinidia chinensis HOM05D005847 ORTHO05D007143 3.2e-22 111.7 182 37.9
CANSAT21G1860 Cannabis sativa HOM05D005847 ORTHO05D007143 3.2e-22 111.7 185 37.3
Ca_24013_v3 Cicer arietinum L. HOM05D005847 ORTHO05D007143 3.2e-22 111.7 181 38.7
Sc01g0010500 Simmondsia chinensis HOM05D005847 ORTHO05D007143 4.2e-22 111.3 164 42.1
COL.COLO4_10763 Corchorus olitorius HOM05D005847 ORTHO05D007143 5.5e-22 110.9 177 40.1
Eucgr.E01030 Eucalyptus grandis HOM05D005847 ORTHO05D007143 5.5e-22 110.9 182 39.6
Peaxi162Scf00074g00363 Petunia axillaris HOM05D005847 ORTHO05D007143 5.5e-22 110.9 135 43.7
Atru.chr9.1922 Acer truncatum HOM05D005847 ORTHO05D007143 9.4e-22 110.2 183 37.2
AagrBONN_evm.TU.Sc2ySwM_228.3279 Anthoceros agrestis HOM05D005847 ORTHO05D007143 1.2e-21 109.8 173 39.3
Sed0023920 Sechium edule HOM05D005847 ORTHO05D007143 1.2e-21 109.8 182 36.3
MD14G1134800 Malus domestica HOM05D005847 ORTHO05D007143 1.6e-21 109.4 187 36.9
MBI12_g02092_MAGBIO Magnolia biondii HOM05D005847 ORTHO05D007143 2.1e-21 109.0 166 41.0
Nn8g41240 Nelumbo nucifera HOM05D005847 ORTHO05D007143 2.1e-21 109.0 165 41.2
Manes.01G053800 Manihot esculenta HOM05D005847 ORTHO05D007143 2.7e-21 108.6 182 37.4
MD06G1113800 Malus domestica HOM05D005847 ORTHO05D007143 3.6e-21 108.2 187 36.9
CsaV3_5G001820 Cucumis sativus L. HOM05D005847 ORTHO05D007143 8.0e-21 107.1 182 36.8
Prupe.5G126500 Prunus persica HOM05D005847 ORTHO05D007143 1.0e-20 106.7 169 38.5
CSS0040838 Camellia sinensis var. sinensis HOM05D005847 ORTHO05D007143 1.4e-20 106.3 182 37.4
Zm00001eb021260 Zea mays HOM05D005847 ORTHO05D007143 1.8e-20 105.9 167 37.7
Pp3c9_6890 Physcomitrium patens HOM05D005847 ORTHO05D007143 3.0e-20 105.1 162 42.0
TAR629G2252 Trochodendron aralioides HOM05D005847 ORTHO05D007143 3.0e-20 105.1 162 40.7
arahy.Tifrunner.gnm1.ann1.HI9AVU Arachis hypogaea HOM05D005847 ORTHO05D007143 4.0e-20 104.8 157 39.5
Nitab4.5_0006880g0020 Nicotiana tabacum HOM05D005847 ORTHO05D007143 6.8e-20 104.0 179 38.0
MELO3C005771.2 Cucumis melo HOM05D005847 ORTHO05D007143 8.8e-20 103.6 182 34.6
arahy.Tifrunner.gnm1.ann1.PR6ST2 Arachis hypogaea HOM05D005847 ORTHO05D007143 2.0e-19 102.4 157 38.9
Lsat_1_v5_gn_6_83620 Lactuca sativa HOM05D005847 ORTHO05D007143 2.6e-19 102.1 175 35.4
vmacro11522 Vaccinium macrocarpon HOM05D005847 ORTHO05D007143 1.4e-17 96.3 124 45.2
HPP92_003273 Vanilla planifolia HOM05D005847 ORTHO05D007143 1.4e-17 96.3 174 35.6
SMO115G0010 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 2.4e-17 95.5 160 36.9
ATR0757G021 Amborella trichopoda HOM05D005847 ORTHO05D007143 5.4e-17 94.4 181 33.1
ClCG01G001660 Citrullus lanatus HOM05D005847 ORTHO05D007143 3.5e-16 91.7 153 37.3
SMO119G0297 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 5.5e-14 84.3 192 32.8
Ah.12g052990 Amaranthus hybridus HOM05D005847 ORTHO05D007143 1.6e-13 82.8 197 30.5
MCO09G139 Micromonas commoda HOM05D005847 ORTHO05D007143 4.7e-13 81.3 147 38.8
Sabra01G0063100 Salix brachista HOM05D005847 ORTHO05D007143 3.0e-12 78.6 183 31.1
Rhsim02G0249100 Rhododendron simsii HOM05D005847 ORTHO05D007143 1.2e-11 76.6 188 29.3
MSTRG.15574 Avicennia marina HOM05D005847 ORTHO05D007143 9.8e-11 73.6 126 37.3
unitig_21.g20386 Utricularia gibba HOM05D005847 ORTHO05D007143 1.7e-10 72.8 126 35.7
SMO116G0437 Selaginella moellendorffii HOM05D005847 ORTHO05D007143 4.9e-10 71.2 187 28.3
Cre05.g237526 Chlamydomonas reinhardtii HOM05D049966 ORTHO05D007143 1.4e-09 69.7 76 55.3
SGA_v2.0_scaffold159G37696 Striga asiatica HOM05D005847 ORTHO05D007143 1.8e-09 69.3 162 32.7
RcHm_v2.0_Chr7g0186411 Rosa chinensis HOM05D005847 ORTHO05D007143 1.0e-07 63.5 75 41.3
CBR_g978 Chara braunii HOM05D005847 ORTHO05D007143 1.3e-07 63.2 174 27.6
CARHR046320 Cardamine hirsuta HOM05D005847 ORTHO05D007143 1.7e-07 62.8 97 37.1
RcHm_v2.0_Chr7g0186431 Rosa chinensis HOM05D005847 ORTHO05D007143 2.9e-07 62.0 77 44.2


User provided reference genes

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