Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre05.g234250 Chlamydomonas reinhardtii HOM05D004639 ORTHO05D005201 7.8e-166 587.0 290 100.0
CBR_g51322 Chara braunii HOM05D004639 ORTHO05D005201 2.2e-35 153.7 140 47.9
PRCOL_00006916 Prasinoderma coloniale HOM05D004639 ORTHO05D005201 2.1e-33 147.1 239 39.7
Mapoly0049s0024 Marchantia polymorpha HOM05D004639 ORTHO05D005201 2.7e-33 146.7 155 43.2
Cc00_g06760 Coffea canephora HOM05D004639 ORTHO05D005201 4.3e-31 139.4 135 48.1
Pp3c15_4380 Physcomitrium patens HOM05D004639 ORTHO05D005201 1.6e-30 137.5 154 40.3
SMO334G0025 Selaginella moellendorffii HOM05D004639 ORTHO05D005201 4.7e-30 136.0 139 41.7
EL10As7g23724 Beta vulgaris HOM05D004639 ORTHO05D005201 6.8e-29 132.1 137 43.8
Carub.0003s0750 Capsella rubella HOM05D004639 ORTHO05D005201 8.9e-29 131.7 133 42.9
C07p01740 Brassica napus HOM05D004639 ORTHO05D005201 1.5e-28 131.0 133 43.6
BolC7t40577H Brassica oleracea HOM05D004639 ORTHO05D005201 1.5e-28 131.0 133 43.6
AUR62017756 Chenopodium quinoa HOM05D004639 ORTHO05D005201 1.5e-28 131.0 137 43.1
CANSAT64G1383 Cannabis sativa HOM05D004639 ORTHO05D005201 2.0e-28 130.6 133 44.4
CANSAT64G2443 Cannabis sativa HOM05D004639 ORTHO05D005201 2.0e-28 130.6 133 44.4
Prupe.4G286600 Prunus persica HOM05D004639 ORTHO05D005201 2.6e-28 130.2 133 44.4
Ah.05g167280 Amaranthus hybridus HOM05D001485 ORTHO05D001407 3.4e-28 129.8 134 44.0
Hma1.2p1_1077F.1_g254710 Hydrangea macrophylla HOM05D004639 ORTHO05D005201 3.4e-28 129.8 155 40.6
AL3G19300 Arabidopsis lyrata HOM05D004639 ORTHO05D005201 4.4e-28 129.4 133 42.9
BcaB04g16901 Brassica carinata HOM05D004639 ORTHO05D005201 4.4e-28 129.4 154 39.6
Cpa.g.sc15.68 Carica papaya HOM05D004639 ORTHO05D005201 5.8e-28 129.0 134 43.3
SGA_v2.0_scaffold291G47333 Striga asiatica HOM05D004639 ORTHO05D005201 5.8e-28 129.0 156 39.1
Aqoxy4G01839 Aquilegia oxysepala HOM05D004639 ORTHO05D005201 7.6e-28 128.6 164 37.2
A07p00740 Brassica napus HOM05D004639 ORTHO05D005201 7.6e-28 128.6 133 42.9
BraA07t27872Z Brassica rapa HOM05D004639 ORTHO05D005201 7.6e-28 128.6 133 42.9
Thhalv10020704m.g Eutrema salsugineum HOM05D004639 ORTHO05D005201 1.3e-27 127.9 133 42.9
CANSAT64G2852 Cannabis sativa HOM05D004639 ORTHO05D005201 1.7e-27 127.5 133 44.4
Peaxi162Scf00331g00311 Petunia axillaris HOM05D004639 ORTHO05D005201 1.7e-27 127.5 141 43.3
Aa31LG5G18470 Aethionema arabicum HOM05D004639 ORTHO05D005201 2.2e-27 127.1 164 37.2
PSO384G4518 Papaver somniferum HOM05D004639 ORTHO05D005201 2.2e-27 127.1 139 41.0
PSO493G0020 Papaver somniferum HOM05D004639 ORTHO05D005201 2.2e-27 127.1 139 41.0
Sp3g06840 Schrenkiella parvula HOM05D004639 ORTHO05D005201 2.2e-27 127.1 133 42.1
Actinidia23035 Actinidia chinensis HOM05D004639 ORTHO05D005201 2.9e-27 126.7 166 38.6
Eucgr.B01580 Eucalyptus grandis HOM05D004639 ORTHO05D005201 2.9e-27 126.7 161 41.0
RcHm_v2.0_Chr3g0497491 Rosa chinensis HOM05D004639 ORTHO05D005201 3.8e-27 126.3 163 39.9
MBI03_g13041_MAGBIO Magnolia biondii HOM05D004639 ORTHO05D005201 6.4e-27 125.6 140 42.1
ATR0068G005 Amborella trichopoda HOM05D004639 ORTHO05D005201 8.4e-27 125.2 129 41.9
MD00G1164900 Malus domestica HOM05D004639 ORTHO05D005201 8.4e-27 125.2 136 41.9
Solyc02g021100.3 Solanum lycopersicum HOM05D004639 ORTHO05D005201 8.4e-27 125.2 137 43.1
CAN.G989.2 Capsicum annuum HOM05D004639 ORTHO05D005201 1.1e-26 124.8 133 42.9
Sopen02g005400 Solanum pennellii HOM05D004639 ORTHO05D005201 1.1e-26 124.8 137 43.1
arahy.Tifrunner.gnm1.ann1.CP937L Arachis hypogaea HOM05D004639 ORTHO05D005201 1.4e-26 124.4 217 34.1
PGR031G3121 Punica granatum HOM05D004639 ORTHO05D005201 1.4e-26 124.4 133 45.1
arahy.Tifrunner.gnm1.ann1.GWL1KB Arachis hypogaea HOM05D004639 ORTHO05D005201 2.4e-26 123.6 228 33.8
Ciclev10028470m.g Citrus clementina HOM05D004639 ORTHO05D005201 2.4e-26 123.6 138 42.0
Rhsim11G0007200 Rhododendron simsii HOM05D004639 ORTHO05D005201 3.2e-26 123.2 133 43.6
FvH4_1g27870 Fragaria vesca HOM05D004639 ORTHO05D005201 4.1e-26 122.9 214 35.0
FAN26G1776 Fragaria x ananassa HOM05D004639 ORTHO05D005201 4.1e-26 122.9 214 35.0
Dinv01634 Davidia involucrata HOM05D004639 ORTHO05D005201 5.4e-26 122.5 152 38.8
FAN19G3130 Fragaria x ananassa HOM05D004639 ORTHO05D005201 5.4e-26 122.5 214 35.0
Manes.18G143900 Manihot esculenta HOM05D004639 ORTHO05D005201 5.4e-26 122.5 153 41.2
THA.LOC104805811 Tarenaya hassleriana HOM05D004639 ORTHO05D005201 9.2e-26 121.7 133 39.8
Lj2g0020909 Lotus japonicus HOM05D004639 ORTHO05D005201 1.6e-25 120.9 133 43.6
Hund25534 Selenicereus undatus HOM05D004639 ORTHO05D005201 1.6e-25 120.9 116 46.6
vmacro04281 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 1.6e-25 120.9 133 41.4
Nitab4.5_0010824g0010 Nicotiana tabacum HOM05D004639 ORTHO05D005201 2.1e-25 120.6 141 40.4
TWI15G1026 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 2.1e-25 120.6 135 41.5
TWI31G0951 Tripterygium wilfordii HOM05D004639 ORTHO05D005201 2.7e-25 120.2 135 40.7
TAR376G0371 Trochodendron aralioides HOM05D004639 ORTHO05D005201 3.5e-25 119.8 133 41.4
MSTRG.8994 Avicennia marina HOM05D004639 ORTHO05D005201 4.6e-25 119.4 162 37.7
Migut.A01100 Erythranthe guttata HOM05D004639 ORTHO05D005201 4.6e-25 119.4 161 37.9
Lalb_Chr00c23g0406301 Lupinus albus HOM05D004639 ORTHO05D005201 4.6e-25 119.4 136 42.6
QL01p053168 Quercus lobata HOM05D004639 ORTHO05D005201 6.0e-25 119.0 134 41.0
SEGI_27362 Sequoiadendron giganteum HOM05D004639 ORTHO05D005201 6.0e-25 119.0 129 40.3
Potri.014G187300 Populus trichocarpa HOM05D004639 ORTHO05D005201 7.8e-25 118.6 133 43.6
Potri.014G189400 Populus trichocarpa HOM05D004639 ORTHO05D005201 7.8e-25 118.6 133 43.6
QL01p053770 Quercus lobata HOM05D004639 ORTHO05D005201 7.8e-25 118.6 134 41.0
HPP92_007024 Vanilla planifolia HOM05D004639 ORTHO05D005201 7.8e-25 118.6 129 46.5
Potri.014G187000 Populus trichocarpa HOM05D004639 ORTHO05D005201 1.0e-24 118.2 133 43.6
HanXRQChr12g0386021 Helianthus annuus HOM05D004639 ORTHO05D005201 1.3e-24 117.9 133 40.6
Nitab4.5_0001799g0030 Nicotiana tabacum HOM05D004639 ORTHO05D005201 1.7e-24 117.5 162 37.0
HanXRQChr16g0532761 Helianthus annuus HOM05D004639 ORTHO05D005201 2.3e-24 117.1 133 40.6
ECA234G3785 Erigeron canadensis HOM05D004639 ORTHO05D005201 3.0e-24 116.7 158 36.7
vmacro22429 Vaccinium macrocarpon HOM05D004639 ORTHO05D005201 3.0e-24 116.7 133 40.6
HPP92_007076 Vanilla planifolia HOM05D004639 ORTHO05D005201 3.0e-24 116.7 123 47.2
SalBow6G0181 Salvia bowleyana HOM05D004639 ORTHO05D005201 5.1e-24 115.9 133 43.6
SalBow6G5700 Salvia bowleyana HOM05D004639 ORTHO05D005201 5.1e-24 115.9 133 43.6
ECA234G0087 Erigeron canadensis HOM05D004639 ORTHO05D005201 6.6e-24 115.5 133 39.8
Lj2g0022882 Lotus japonicus HOM05D004639 ORTHO05D005201 6.6e-24 115.5 139 40.3
DCAR_016067 Daucus carota HOM05D004639 ORTHO05D005201 8.6e-24 115.2 133 39.8
Phvul.L000400 Phaseolus vulgaris HOM05D004639 ORTHO05D005201 8.6e-24 115.2 135 37.0
SHI25031 Sapria himalayana HOM05D004639 ORTHO05D005201 1.5e-23 114.4 133 39.8
Oeu061992.1 Olea europaea HOM05D004639 ORTHO05D005201 4.3e-23 112.8 133 39.1
Os09g0101100 Oryza sativa ssp. japonica HOM05D004639 ORTHO05D005201 4.3e-23 112.8 131 41.2
Lsat_1_v5_gn_3_140620 Lactuca sativa HOM05D004639 ORTHO05D005201 5.6e-23 112.5 133 38.3
Medtr0037s0250 Medicago truncatula HOM05D004639 ORTHO05D005201 5.6e-23 112.5 135 39.3
Sabra19G0060700 Salix brachista HOM05D004639 ORTHO05D005201 7.3e-23 112.1 133 41.4
Sabra19G0060900 Salix brachista HOM05D004639 ORTHO05D005201 7.3e-23 112.1 133 41.4
Sabra19G0061000 Salix brachista HOM05D004639 ORTHO05D005201 7.3e-23 112.1 133 41.4
SabraUnG0000100 Salix brachista HOM05D004639 ORTHO05D005201 7.3e-23 112.1 133 41.4
SabraUnG0000200 Salix brachista HOM05D004639 ORTHO05D005201 7.3e-23 112.1 133 41.4
Thecc.04G056700 Theobroma cacao HOM05D004639 ORTHO05D005201 7.3e-23 112.1 133 40.6
CsaV3_5G037160 Cucumis sativus L. HOM05D004639 ORTHO05D005201 9.6e-23 111.7 135 38.5
Gohir.A09G007300 Gossypium hirsutum HOM05D004639 ORTHO05D005201 9.6e-23 111.7 133 41.4
Gorai.006G008100 Gossypium raimondii HOM05D004639 ORTHO05D005201 9.6e-23 111.7 133 41.4
VMungo0540G1855 Vigna mungo HOM05D004639 ORTHO05D005201 1.2e-22 111.3 133 37.6
CiPaw.15G093500 Carya illinoinensis HOM05D004639 ORTHO05D005201 1.6e-22 110.9 187 35.8
Medtr0037s0060 Medicago truncatula HOM05D004639 ORTHO05D005201 1.6e-22 110.9 206 32.0
GSVIVG01003641001 Vitis vinifera HOM05D004639 ORTHO05D005201 2.1e-22 110.5 133 39.1
MELO3C022885.2 Cucumis melo HOM05D004639 ORTHO05D005201 3.6e-22 109.8 185 33.5
Atru.chr9.65 Acer truncatum HOM05D004639 ORTHO05D005201 4.7e-22 109.4 131 38.2
ClCG08G005050 Citrullus lanatus HOM05D004639 ORTHO05D005201 4.7e-22 109.4 208 34.6
Gohir.D09G006600 Gossypium hirsutum HOM05D004639 ORTHO05D005201 4.7e-22 109.4 133 40.6
Glyma.13G009500 Glycine max HOM05D004639 ORTHO05D005201 6.2e-22 109.0 135 37.0
Potri.012G037700 Populus trichocarpa HOM05D004639 ORTHO05D005201 6.2e-22 109.0 136 38.2
Sabra12G0026100 Salix brachista HOM05D004639 ORTHO05D005201 1.1e-21 108.2 136 38.2
Zm00001eb264110 Zea mays HOM05D004639 ORTHO05D005201 1.5e-20 104.4 199 32.2
BcaC06g36658 Brassica carinata HOM05D004639 ORTHO05D005201 2.0e-20 104.0 101 42.6
CBR_g37349 Chara braunii HOM05D000004 ORTHO05D000002 2.0e-20 104.0 101 41.6
AUR62032895 Chenopodium quinoa HOM05D004639 ORTHO05D005201 3.4e-20 103.2 136 36.8
Nn5g27169 Nelumbo nucifera HOM05D004639 ORTHO05D005201 4.4e-20 102.8 133 39.8
unitig_22.g6364 Utricularia gibba HOM05D004639 ORTHO05D005201 1.4e-18 97.8 104 42.3
CDE02G2478 Ceratophyllum demersum HOM05D004639 ORTHO05D005201 2.4e-18 97.1 133 38.3
Lj2g0018447 Lotus japonicus HOM05D004639 ORTHO05D005201 2.7e-17 93.6 142 31.7
Sc22g0004560 Simmondsia chinensis HOM05D004639 ORTHO05D005201 4.6e-17 92.8 101 36.6
Potri.014G187766 Populus trichocarpa HOM05D004639 ORTHO05D005201 6.6e-16 89.0 133 36.8
BcaC08g44553 Brassica carinata HOM05D004639 ORTHO05D005201 1.9e-15 87.4 140 35.7
Duzib235G0802 Durio zibethinus HOM05D004639 ORTHO05D005201 2.5e-15 87.0 101 39.6
Sed0017627 Sechium edule HOM05D004639 ORTHO05D005201 4.3e-15 86.3 127 37.0
Lalb_Chr18g0049251 Lupinus albus HOM05D004639 ORTHO05D005201 7.3e-15 85.5 98 39.8
Nitab4.5_0000843g0080 Nicotiana tabacum HOM05D004639 ORTHO05D005201 1.6e-14 84.3 100 38.0
Lalb_Chr00c55g0413711 Lupinus albus HOM05D004639 ORTHO05D005201 2.8e-14 83.6 97 39.2
Sabra19G0060200 Salix brachista HOM05D004639 ORTHO05D005201 6.2e-14 82.4 136 34.6
CARHR082670 Cardamine hirsuta HOM05D004639 ORTHO05D005201 1.1e-13 81.6 98 37.8
TPR.G9531 Trifolium pratense HOM05D004639 ORTHO05D005201 5.3e-13 79.3 94 37.2
Dinv08242 Davidia involucrata HOM05D004639 ORTHO05D005201 1.7e-11 74.3 94 36.2
QL01p052883 Quercus lobata HOM05D011240 ORTHO05D005201 3.8e-11 73.2 99 33.3
HPP92_015991 Vanilla planifolia HOM05D004639 ORTHO05D005201 3.2e-10 70.1 94 39.4
AagrBONN_evm.TU.Sc2ySwM_228.991 Anthoceros agrestis HOM05D004639 ORTHO05D005201 2.7e-09 67.0 40 67.5
Cfa026891 Carpinus fangiana HOM05D003606 ORTHO05D004650 3.5e-09 66.6 185 30.3
C06p20180 Brassica napus HOM05D004639 ORTHO05D005201 1.0e-08 65.1 133 30.8
BolC6t37199H Brassica oleracea HOM05D004639 ORTHO05D005201 1.0e-08 65.1 133 30.8
PRCOL_00003051 Prasinoderma coloniale HOM05D046594 ORTHO05D005201 5.1e-08 62.8 86 33.7
Gohir.D02G140450 Gossypium hirsutum HOM05D004639 ORTHO05D005201 1.9e-07 60.8 78 41.0
Sabra19G0060300 Salix brachista HOM05D004639 ORTHO05D005201 1.9e-07 60.8 75 38.7
Sabra19G0060600 Salix brachista HOM05D004639 ORTHO05D005201 1.6e-06 57.8 49 53.1
Gorai.005G156200 Gossypium raimondii HOM05D004639 ORTHO05D005201 2.1e-06 57.4 78 39.7
QL93p0107_0438 Quercus lobata HOM05D004639 ORTHO05D005201 4.8e-06 56.2 56 42.9
Haze_08020 Corylus avellana HOM05D004639 ORTHO05D005201 6.2e-06 55.8 37 64.9
MCO10G304 Micromonas commoda HOM05D046594 ORTHO05D005201 8.1e-06 55.5 179 28.5


User provided reference genes

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