Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre05.g233305 Chlamydomonas reinhardtii HOM05D006147 ORTHO05D007501 3.3e-212 741.5 390 100.0
Pp3c7_11090 Physcomitrium patens HOM05D006147 ORTHO05D007501 7.1e-98 361.7 376 52.1
Pp3c7_11100 Physcomitrium patens HOM05D006147 ORTHO05D007501 7.1e-98 361.7 376 52.1
Medtr4g072040 Medicago truncatula HOM05D006147 ORTHO05D007501 3.5e-97 359.4 308 56.8
MCO05G212 Micromonas commoda HOM05D006147 ORTHO05D007501 6.7e-96 355.1 307 57.7
SMO146G0042 Selaginella moellendorffii HOM05D006147 ORTHO05D007501 8.7e-96 354.8 299 58.9
Psat7g138880 Pisum sativum HOM05D006147 ORTHO05D007501 2.5e-95 353.2 302 57.6
Ca_20936_v3 Cicer arietinum L. HOM05D006147 ORTHO05D007501 4.3e-95 352.4 308 55.5
Potri.009G124800 Populus trichocarpa HOM05D006147 ORTHO05D007501 4.3e-95 352.4 312 54.8
Mapoly0021s0030 Marchantia polymorpha HOM05D006147 ORTHO05D007501 9.6e-95 351.3 339 53.7
Os02g0834700 Oryza sativa ssp. japonica HOM05D006147 ORTHO05D007501 9.6e-95 351.3 308 54.9
TPR.G28159 Trifolium pratense HOM05D006147 ORTHO05D007501 1.3e-94 350.9 308 55.5
AT2G21280 Arabidopsis thaliana HOM05D006147 ORTHO05D007501 1.6e-94 350.5 313 55.0
VMungo1127G0575 Vigna mungo HOM05D006147 ORTHO05D007501 2.1e-94 350.1 305 55.4
Glyma.11G110000 Glycine max HOM05D006147 ORTHO05D007501 2.8e-94 349.7 323 53.9
Lalb_Chr03g0025341 Lupinus albus HOM05D006147 ORTHO05D007501 3.7e-94 349.4 305 55.4
Migut.N01278 Erythranthe guttata HOM05D006147 ORTHO05D007501 4.8e-94 349.0 305 56.4
Glyma.12G036900 Glycine max HOM05D006147 ORTHO05D007501 6.3e-94 348.6 305 56.1
Gohir.A03G199400 Gossypium hirsutum HOM05D006147 ORTHO05D007501 6.3e-94 348.6 315 54.6
Peaxi162Scf00684g00123 Petunia axillaris HOM05D006147 ORTHO05D007501 6.3e-94 348.6 303 56.4
AL4G10420 Arabidopsis lyrata HOM05D006147 ORTHO05D007501 1.1e-93 347.8 316 54.7
THA.LOC104804110 Tarenaya hassleriana HOM05D006147 ORTHO05D007501 1.8e-93 347.1 337 53.1
Oeu055635.1 Olea europaea HOM05D006147 ORTHO05D007501 2.4e-93 346.7 329 52.9
CANSAT11G2690 Cannabis sativa HOM05D006147 ORTHO05D007501 4.1e-93 345.9 303 54.8
Prupe.8G083600 Prunus persica HOM05D006147 ORTHO05D007501 4.1e-93 345.9 302 55.3
PGSC0003DMG402031287 Solanum tuberosum HOM05D006147 ORTHO05D007501 4.1e-93 345.9 303 56.4
Lj3g0027328 Lotus japonicus HOM05D006147 ORTHO05D007501 5.3e-93 345.5 305 55.4
Sabra09G0095800 Salix brachista HOM05D006147 ORTHO05D007501 5.3e-93 345.5 324 53.1
Cfa005114 Carpinus fangiana HOM05D006147 ORTHO05D007501 6.9e-93 345.1 312 55.1
CsaV3_7G000410 Cucumis sativus L. HOM05D006147 ORTHO05D007501 6.9e-93 345.1 305 56.4
arahy.Tifrunner.gnm1.ann1.JUX7JJ Arachis hypogaea HOM05D006147 ORTHO05D007501 9.0e-93 344.7 335 51.9
MD05G1055500 Malus domestica HOM05D006147 ORTHO05D007501 9.0e-93 344.7 334 52.7
Sopen09g034870 Solanum pennellii HOM05D006147 ORTHO05D007501 9.0e-93 344.7 303 56.1
Gohir.D02G220700 Gossypium hirsutum HOM05D006147 ORTHO05D007501 1.2e-92 344.4 315 54.0
Phvul.011G038600 Phaseolus vulgaris HOM05D006147 ORTHO05D007501 1.2e-92 344.4 302 55.6
COL.COLO4_26048 Corchorus olitorius HOM05D006147 ORTHO05D007501 1.5e-92 344.0 315 54.0
Atru.chr5.3146 Acer truncatum HOM05D006147 ORTHO05D007501 2.0e-92 343.6 312 53.8
Thecc.02G074800 Theobroma cacao HOM05D006147 ORTHO05D007501 2.0e-92 343.6 303 55.8
Solyc09g091970.4 Solanum lycopersicum HOM05D006147 ORTHO05D007501 3.4e-92 342.8 303 56.1
A04p16060 Brassica napus HOM05D006147 ORTHO05D007501 4.5e-92 342.4 345 52.2
CARHR112150 Cardamine hirsuta HOM05D006147 ORTHO05D007501 4.5e-92 342.4 316 54.1
MD10G1062800 Malus domestica HOM05D006147 ORTHO05D007501 4.5e-92 342.4 334 52.1
SalBow3G3875 Salvia bowleyana HOM05D006147 ORTHO05D007501 4.5e-92 342.4 334 53.3
TWI31G1450 Tripterygium wilfordii HOM05D006147 ORTHO05D007501 4.5e-92 342.4 305 53.8
Aa31LG7G15210 Aethionema arabicum HOM05D006147 ORTHO05D007501 5.9e-92 342.0 356 50.3
C04p50520 Brassica napus HOM05D006147 ORTHO05D007501 5.9e-92 342.0 347 51.6
RcHm_v2.0_Chr6g0267981 Rosa chinensis HOM05D006147 ORTHO05D007501 5.9e-92 342.0 363 50.7
Sed0012779 Sechium edule HOM05D006147 ORTHO05D007501 5.9e-92 342.0 327 53.2
Cpa.g.sc150.15 Carica papaya HOM05D006147 ORTHO05D007501 1.0e-91 341.3 302 55.0
FAN27G3378 Fragaria x ananassa HOM05D006147 ORTHO05D007501 1.3e-91 340.9 368 50.5
HPP92_002502 Vanilla planifolia HOM05D006147 ORTHO05D007501 1.7e-91 340.5 303 54.8
Thhalv10000221m.g Eutrema salsugineum HOM05D006147 ORTHO05D007501 2.2e-91 340.1 316 53.8
Actinidia02248 Actinidia chinensis HOM05D006147 ORTHO05D007501 2.9e-91 339.7 302 55.0
EL10Ac9g21633 Beta vulgaris HOM05D006147 ORTHO05D007501 2.9e-91 339.7 303 54.5
CiPaw.05G073500 Carya illinoinensis HOM05D006147 ORTHO05D007501 2.9e-91 339.7 302 55.3
Ciclev10028728m.g Citrus clementina HOM05D006147 ORTHO05D007501 5.0e-91 339.0 318 53.5
ATR0149G025 Amborella trichopoda HOM05D006147 ORTHO05D007501 6.5e-91 338.6 319 52.4
CAN.G1635.6 Capsicum annuum HOM05D006147 ORTHO05D007501 6.5e-91 338.6 362 50.0
FAN15G0109 Fragaria x ananassa HOM05D006147 ORTHO05D007501 6.5e-91 338.6 337 52.2
Carub.0004s0032 Capsella rubella HOM05D006147 ORTHO05D007501 8.4e-91 338.2 349 51.6
CSS0016386 Camellia sinensis var. sinensis HOM05D006147 ORTHO05D007501 1.1e-90 337.8 302 54.3
QL11p046465 Quercus lobata HOM05D006147 ORTHO05D007501 1.1e-90 337.8 312 53.8
arahy.Tifrunner.gnm1.ann1.S6V2XE Arachis hypogaea HOM05D006147 ORTHO05D007501 1.4e-90 337.4 369 49.3
BcaC02g08802 Brassica carinata HOM05D006147 ORTHO05D007501 2.5e-90 336.7 351 51.3
BolC4t26650H Brassica oleracea HOM05D006147 ORTHO05D007501 2.5e-90 336.7 351 51.3
GSVIVG01024169001 Vitis vinifera HOM05D006147 ORTHO05D007501 2.5e-90 336.7 305 54.1
Manes.04G083100 Manihot esculenta HOM05D006147 ORTHO05D007501 3.2e-90 336.3 305 53.8
PSO210G6769 Papaver somniferum HOM05D006147 ORTHO05D007501 3.2e-90 336.3 357 47.9
Sp4g00470 Schrenkiella parvula HOM05D006147 ORTHO05D007501 3.2e-90 336.3 356 50.3
Hund00185 Selenicereus undatus HOM05D006147 ORTHO05D007501 3.2e-90 336.3 303 54.5
TAR628G0064 Trochodendron aralioides HOM05D006147 ORTHO05D007501 3.2e-90 336.3 303 53.5
Aqoxy6G02357 Aquilegia oxysepala HOM05D006147 ORTHO05D007501 4.2e-90 335.9 356 49.7
Eucgr.G01732 Eucalyptus grandis HOM05D006147 ORTHO05D007501 2.1e-89 333.6 334 52.7
CSS0033675 Camellia sinensis var. sinensis HOM05D006147 ORTHO05D007501 2.7e-89 333.2 302 53.3
PGR042G0282 Punica granatum HOM05D006147 ORTHO05D007501 2.7e-89 333.2 357 49.9
Hund00177 Selenicereus undatus HOM05D006147 ORTHO05D007501 2.7e-89 333.2 300 54.7
AUR62016834 Chenopodium quinoa HOM05D006147 ORTHO05D007501 7.9e-89 331.6 305 53.4
vmacro17420 Vaccinium macrocarpon HOM05D006147 ORTHO05D007501 2.3e-88 330.1 340 48.8
ECA233G5423 Erigeron canadensis HOM05D006147 ORTHO05D001140 3.7e-86 322.8 391 45.5
Duzib248G0035 Durio zibethinus HOM05D006147 ORTHO05D007501 5.3e-85 318.9 355 47.3
Gorai.005G248600 Gossypium raimondii HOM05D006147 ORTHO05D007501 2.6e-84 316.6 284 55.6
AUR62010384 Chenopodium quinoa HOM05D006147 ORTHO05D007501 3.4e-84 316.2 339 48.4
Sc18g0005390 Simmondsia chinensis HOM05D006147 ORTHO05D007501 3.4e-84 316.2 273 57.5
DCAR_003686 Daucus carota HOM05D006147 ORTHO05D007501 5.9e-84 315.5 278 55.4
Lj5C189G13 Lonicera japonica HOM05D006147 ORTHO05D007501 1.7e-83 313.9 305 50.8
Zm00001eb259680 Zea mays HOM05D006147 ORTHO05D007501 1.1e-82 311.2 272 57.7
Rhsim05G0068100 Rhododendron simsii HOM05D006147 ORTHO05D007501 1.5e-79 300.8 303 49.5
Haze_02237 Corylus avellana HOM05D006147 ORTHO05D007501 5.7e-79 298.9 382 45.3
ClCG02G004540 Citrullus lanatus HOM05D006147 ORTHO05D007501 3.1e-77 293.1 305 50.8
CDE02G0092 Ceratophyllum demersum HOM05D006147 ORTHO05D007501 4.1e-77 292.7 306 47.4
PRCOL_00000238 Prasinoderma coloniale HOM05D006147 ORTHO05D007501 2.9e-75 286.6 239 59.8
Lsat_1_v5_gn_8_127980 Lactuca sativa HOM05D006147 ORTHO05D007501 3.8e-75 286.2 309 48.2
MELO3C002785.2 Cucumis melo HOM05D006147 ORTHO05D007501 2.5e-74 283.5 256 56.6
Nitab4.5_0001154g0060 Nicotiana tabacum HOM05D006147 ORTHO05D007501 2.5e-74 283.5 298 50.0
MCO16G248 Micromonas commoda HOM05D006147 ORTHO05D007501 5.5e-74 282.3 310 49.4
unitig_899.g15602 Utricularia gibba HOM05D006147 ORTHO05D007501 6.1e-73 278.9 284 50.4
PSO170G3006 Papaver somniferum HOM05D006147 ORTHO05D007501 7.5e-63 245.4 354 40.7
Cc02_g16890 Coffea canephora HOM05D006147 ORTHO05D007501 4.1e-61 239.6 233 51.5
Nitab4.5_0001370g0020 Nicotiana tabacum HOM05D006147 ORTHO05D007501 5.0e-59 232.6 185 60.0
SGA_v2.0_scaffold80G25875 Striga asiatica HOM05D006147 ORTHO05D007501 2.2e-54 217.2 257 44.0
Dinv41999 Davidia involucrata HOM05D006147 ORTHO05D007501 2.3e-48 197.2 210 51.4
AUR62040654 Chenopodium quinoa HOM05D006147 ORTHO05D007501 1.4e-45 188.0 313 39.0
arahy.Tifrunner.gnm1.ann1.B04QBU Arachis hypogaea HOM05D006147 ORTHO05D007501 2.7e-44 183.7 202 45.5
Nn4g26316 Nelumbo nucifera HOM05D006147 ORTHO05D007501 4.3e-42 176.4 122 60.7
Nn6g32490 Nelumbo nucifera HOM05D006147 ORTHO05D007501 4.3e-42 176.4 122 60.7
FvH4_2g10480 Fragaria vesca HOM05D006147 ORTHO05D007501 1.2e-39 168.3 255 40.0
Nn6g32256 Nelumbo nucifera HOM05D006147 ORTHO05D007501 1.5e-39 167.9 193 47.7
C09p25880 Brassica napus HOM05D006147 ORTHO05D007501 2.7e-36 157.1 123 56.9
BolC9t55495H Brassica oleracea HOM05D006147 ORTHO05D007501 2.7e-36 157.1 123 56.9
MELO3C028749.2 Cucumis melo HOM05D006147 ORTHO05D007501 8.6e-35 152.1 207 47.8
Pp3s34_200 Physcomitrium patens HOM05D006147 ORTHO05D007501 5.6e-34 149.4 301 30.2
SEGI_33639 Sequoiadendron giganteum HOM05D006147 ORTHO05D007501 1.2e-33 148.3 101 63.4
arahy.Tifrunner.gnm1.ann1.63XKYH Arachis hypogaea HOM05D006147 ORTHO05D007501 8.9e-32 142.1 138 53.6
arahy.Tifrunner.gnm1.ann1.KZ1FWN Arachis hypogaea HOM05D006147 ORTHO05D007501 5.4e-29 132.9 183 42.1
Cc02_g16880 Coffea canephora HOM05D006147 ORTHO05D007501 9.2e-21 105.5 78 59.0
BolC2t08257H Brassica oleracea HOM05D006147 ORTHO05D007501 3.5e-20 103.6 126 45.2
BraA07t28491Z Brassica rapa HOM05D006147 ORTHO05D007501 1.9e-18 97.8 125 45.6
BcaC03g14677 Brassica carinata HOM05D006147 ORTHO05D007501 6.8e-16 89.4 118 44.1
C02p21180 Brassica napus HOM05D006147 ORTHO05D007501 2.2e-14 84.3 70 51.4
arahy.Tifrunner.gnm1.ann1.PBTS15 Arachis hypogaea HOM05D006147 ORTHO05D007501 3.8e-14 83.6 179 27.4
CDE04G1860 Ceratophyllum demersum HOM05D006147 ORTHO05D007501 1.9e-13 81.3 298 25.2
A07p07030 Brassica napus HOM05D006147 ORTHO05D007501 9.2e-13 79.0 125 42.4
BcaB08g34979 Brassica carinata HOM05D006147 ORTHO05D007501 7.8e-12 75.9 143 36.4
C02p21170 Brassica napus HOM05D006147 ORTHO05D007501 1.3e-11 75.1 115 39.1
arahy.Tifrunner.gnm1.ann1.UB8UIZ Arachis hypogaea HOM05D006147 ORTHO05D007501 3.9e-11 73.6 100 40.0
SEGI_01868 Sequoiadendron giganteum HOM05D006147 ORTHO05D007501 5.2e-08 63.2 63 54.0


User provided reference genes

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