Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Cre05.g233303 Chlamydomonas reinhardtii HOM05D003697 ORTHO05D005452 0.0e+00 2932.5 1833 100.0
CBR_g48619 Chara braunii HOM05D003697 ORTHO05D005452 1.3e-138 499.2 1871 28.8
Ciclev10000024m.g Citrus clementina HOM05D003697 ORTHO05D005452 1.7e-133 482.3 1810 27.3
Pp3c3_14060 Physcomitrium patens HOM05D003697 ORTHO05D005452 2.1e-131 475.3 1787 27.5
MELO3C019456.2 Cucumis melo HOM05D003697 ORTHO05D005452 4.6e-131 474.2 1795 26.8
AT1G71220 Arabidopsis thaliana HOM05D003697 ORTHO05D005452 1.0e-130 473.0 1763 27.2
Hma1.2p1_0217F.1_g092200 Hydrangea macrophylla HOM05D003697 ORTHO05D005452 1.8e-130 472.2 1803 27.0
AL2G30830 Arabidopsis lyrata HOM05D003697 ORTHO05D005452 5.1e-130 470.7 1770 27.2
CARHR064520 Cardamine hirsuta HOM05D003697 ORTHO05D005452 6.7e-130 470.3 1772 27.3
SMO276G0030 Selaginella moellendorffii HOM05D003697 ORTHO05D005452 8.7e-130 469.9 1774 27.8
A07p37570 Brassica napus HOM05D003697 ORTHO05D005452 1.1e-129 469.5 1766 26.9
BcaC08g46557 Brassica carinata HOM05D003697 ORTHO05D005452 3.3e-129 468.0 1770 27.0
C06p45330 Brassica napus HOM05D003697 ORTHO05D005452 9.7e-129 466.5 1770 27.3
BcaB03g14879 Brassica carinata HOM05D003697 ORTHO05D005452 2.8e-128 464.9 1769 27.1
BraA07t31318Z Brassica rapa HOM05D003697 ORTHO05D005452 4.8e-128 464.2 1767 27.1
COL.COLO4_11778 Corchorus olitorius HOM05D003697 ORTHO05D005452 6.3e-128 463.8 1800 26.7
THA.LOC104801984 Tarenaya hassleriana HOM05D003697 ORTHO05D005452 6.3e-128 463.8 1764 27.0
BolC6t39589H Brassica oleracea HOM05D003697 ORTHO05D005452 1.8e-127 462.2 1770 27.1
Thhalv10018004m.g Eutrema salsugineum HOM05D003697 ORTHO05D005452 5.3e-127 460.7 1776 27.1
Potri.003G018900 Populus trichocarpa HOM05D003697 ORTHO05D005452 2.6e-126 458.4 1798 26.4
PGR142G1992 Punica granatum HOM05D003697 ORTHO05D005452 2.6e-126 458.4 1805 26.4
CsaV3_3G019150 Cucumis sativus L. HOM05D003697 ORTHO05D005452 4.5e-126 457.6 1801 26.5
Sc02g0002740 Simmondsia chinensis HOM05D003697 ORTHO05D005452 4.5e-126 457.6 1806 26.7
Gohir.D04G163800 Gossypium hirsutum HOM05D003697 ORTHO05D005452 1.3e-125 456.1 1802 26.1
Sp5g26380 Schrenkiella parvula HOM05D003697 ORTHO05D005452 3.8e-125 454.5 1776 27.3
Gohir.A04G121300 Gossypium hirsutum HOM05D003697 ORTHO05D005452 1.1e-124 453.0 1800 26.1
Sed0005890 Sechium edule HOM05D003697 ORTHO05D005452 1.4e-124 452.6 1791 26.2
TWI14G0038 Tripterygium wilfordii HOM05D003697 ORTHO05D005452 1.9e-124 452.2 1797 26.2
Mapoly0156s0022 Marchantia polymorpha HOM05D003697 ORTHO05D005452 5.5e-124 450.7 1795 26.6
Actinidia26154 Actinidia chinensis HOM05D003697 ORTHO05D005452 1.4e-122 446.0 1823 26.5
Glyma.08G187500 Glycine max HOM05D003697 ORTHO05D005452 1.4e-122 446.0 1788 26.3
Carub.0002s1810 Capsella rubella HOM05D003697 ORTHO05D005452 1.8e-122 445.7 1772 26.7
HanXRQChr09g0249001 Helianthus annuus HOM05D003697 ORTHO05D005452 1.8e-122 445.7 1799 26.4
Thecc.02G088500 Theobroma cacao HOM05D003697 ORTHO05D005452 1.8e-122 445.7 1799 26.3
Cfa005504 Carpinus fangiana HOM05D003697 ORTHO05D005452 3.0e-122 444.9 1801 26.4
Glyma.05G168600 Glycine max HOM05D003697 ORTHO05D005452 3.9e-122 444.5 1802 27.0
Prupe.1G572000 Prunus persica HOM05D003697 ORTHO05D005452 3.9e-122 444.5 1793 26.2
Migut.B00820 Erythranthe guttata HOM05D003697 ORTHO05D005452 5.1e-122 444.1 1816 26.5
GSVIVG01022867001 Vitis vinifera HOM05D003697 ORTHO05D005452 6.7e-122 443.7 2018 24.8
SEGI_03237 Sequoiadendron giganteum HOM05D003697 ORTHO05D005452 8.8e-122 443.4 1805 26.1
Atru.chr3.1599 Acer truncatum HOM05D003697 ORTHO05D005452 1.1e-121 443.0 1810 26.3
Haze_01738 Corylus avellana HOM05D003697 ORTHO05D005452 1.1e-121 443.0 1801 26.4
FvH4_5g28990 Fragaria vesca HOM05D003697 ORTHO05D005452 2.5e-121 441.8 1798 26.4
Solyc01g104040.4 Solanum lycopersicum HOM05D003697 ORTHO05D005452 3.3e-121 441.4 1802 26.4
FAN08G0197 Fragaria x ananassa HOM05D003697 ORTHO05D005452 4.3e-121 441.0 1799 26.5
Lsat_1_v5_gn_9_118481 Lactuca sativa HOM05D003697 ORTHO05D005452 4.3e-121 441.0 1770 26.4
Sopen01g046450 Solanum pennellii HOM05D003697 ORTHO05D005452 5.7e-121 440.7 1803 26.1
Glyma.08G127200 Glycine max HOM05D003697 ORTHO05D005452 1.7e-120 439.1 1800 26.9
MD15G1427500 Malus domestica HOM05D003697 ORTHO05D005452 2.2e-120 438.7 1800 26.4
Aa31LG4G9290 Aethionema arabicum HOM05D003697 ORTHO05D005452 2.8e-120 438.3 1898 26.1
Manes.10G121900 Manihot esculenta HOM05D003697 ORTHO05D005452 2.8e-120 438.3 1800 26.3
Zm00001eb258320 Zea mays HOM05D003697 ORTHO05D005452 2.8e-120 438.3 1789 26.6
Nn1g08409 Nelumbo nucifera HOM05D003697 ORTHO05D005452 3.7e-120 438.0 1799 26.3
MSTRG.20304 Avicennia marina HOM05D003697 ORTHO05D005452 6.3e-120 437.2 1805 26.4
MD08G1235900 Malus domestica HOM05D003697 ORTHO05D005452 6.3e-120 437.2 1798 26.1
Rhsim05G0119800 Rhododendron simsii HOM05D003697 ORTHO05D005452 6.3e-120 437.2 1851 26.2
ATR1136G197 Amborella trichopoda HOM05D003697 ORTHO05D005452 8.2e-120 436.8 1810 26.1
TAR381G0967 Trochodendron aralioides HOM05D003697 ORTHO05D005452 8.2e-120 436.8 1802 25.9
Gorai.012G151700 Gossypium raimondii HOM05D003697 ORTHO05D005452 1.1e-119 436.4 1834 25.8
QL02p099301 Quercus lobata HOM05D003697 ORTHO05D005452 1.1e-119 436.4 1777 26.4
ECA240G1790 Erigeron canadensis HOM05D003697 ORTHO05D005452 1.4e-119 436.0 1797 25.9
Gohir.A12G027900 Gossypium hirsutum HOM05D003697 ORTHO05D005452 1.8e-119 435.6 1797 26.2
Dinv24296 Davidia involucrata HOM05D003697 ORTHO05D005452 3.1e-119 434.9 1808 26.1
Eucgr.I02739 Eucalyptus grandis HOM05D003697 ORTHO05D005452 2.6e-118 431.8 1807 26.6
EL10Ac4g08781 Beta vulgaris HOM05D003697 ORTHO05D005452 3.4e-118 431.4 1950 25.6
RcHm_v2.0_Chr7g0221551 Rosa chinensis HOM05D003697 ORTHO05D005452 3.4e-118 431.4 1803 26.3
FAN18G2119 Fragaria x ananassa HOM05D003697 ORTHO05D005452 4.5e-118 431.0 1917 25.3
AagrBONN_evm.TU.Sc2ySwM_362.2359 Anthoceros agrestis HOM05D003697 ORTHO05D005452 5.9e-118 430.6 1659 27.8
CDE06G0802 Ceratophyllum demersum HOM05D003697 ORTHO05D005452 1.0e-117 429.9 1786 26.5
Phvul.006G215600 Phaseolus vulgaris HOM05D003697 ORTHO05D005452 1.0e-117 429.9 1784 26.8
Aqoxy5G02635 Aquilegia oxysepala HOM05D003697 ORTHO05D005452 1.3e-117 429.5 1791 26.1
CSS0042528 Camellia sinensis var. sinensis HOM05D003697 ORTHO05D005452 1.7e-117 429.1 1806 26.2
CANSAT11G1101 Cannabis sativa HOM05D003697 ORTHO05D005452 2.2e-117 428.7 1800 25.9
PRCOL_00004479 Prasinoderma coloniale HOM05D003697 ORTHO05D005452 1.9e-116 425.6 1925 27.6
Medtr2g006960 Medicago truncatula HOM05D003697 ORTHO05D005452 3.2e-116 424.9 1773 26.2
Peaxi162Scf00011g00526 Petunia axillaris HOM05D003697 ORTHO05D005452 5.5e-116 424.1 1811 26.2
Sabra03G0010400 Salix brachista HOM05D003697 ORTHO05D005452 9.4e-116 423.3 1804 26.7
FAN04G3000 Fragaria x ananassa HOM05D003697 ORTHO05D005452 2.7e-115 421.8 1828 26.1
HPP92_015204 Vanilla planifolia HOM05D003697 ORTHO05D005452 4.7e-115 421.0 1803 25.8
SalBow7G4621 Salvia bowleyana HOM05D003697 ORTHO05D005452 6.1e-115 420.6 1817 26.0
vmacro19883 Vaccinium macrocarpon HOM05D003697 ORTHO05D005452 3.0e-114 418.3 1864 25.9
Lj6g0024422 Lotus japonicus HOM05D003697 ORTHO05D005452 3.9e-114 417.9 1790 26.3
Oeu027795.2 Olea europaea HOM05D003697 ORTHO05D005452 1.5e-113 416.0 1813 25.4
Lalb_Chr13g0295701 Lupinus albus HOM05D003697 ORTHO05D005452 3.3e-113 414.8 1782 26.2
PSO017G4515 Papaver somniferum HOM05D003697 ORTHO05D005452 9.7e-113 413.3 1804 25.9
AUR62042597 Chenopodium quinoa HOM05D003697 ORTHO05D005452 2.8e-112 411.8 1797 25.9
PSO170G2453 Papaver somniferum HOM05D003697 ORTHO05D005452 4.8e-112 411.0 1804 25.2
Duzib248G1637 Durio zibethinus HOM05D003697 ORTHO05D005452 1.8e-111 409.1 1773 25.8
FAN13G2190 Fragaria x ananassa HOM05D003697 ORTHO05D005452 2.4e-111 408.7 1905 25.5
TPR.G2085 Trifolium pratense HOM05D003697 ORTHO05D005452 5.3e-111 407.5 1825 25.9
arahy.Tifrunner.gnm1.ann1.6LDV6M Arachis hypogaea HOM05D003697 ORTHO05D005452 1.6e-110 406.0 1802 25.5
arahy.Tifrunner.gnm1.ann1.IR21Q7 Arachis hypogaea HOM05D003697 ORTHO05D005452 2.0e-110 405.6 1802 25.5
VMungo0540G0442 Vigna mungo HOM05D003697 ORTHO05D005452 8.8e-106 390.2 1800 26.1
AUR62037329 Chenopodium quinoa HOM05D003697 ORTHO05D005452 3.8e-101 374.8 1818 24.8
DCAR_006698 Daucus carota HOM05D003697 ORTHO05D005452 5.0e-101 374.4 1794 25.2
Atru.chr3.1607 Acer truncatum HOM05D003697 ORTHO05D005452 8.8e-98 363.6 1462 26.3
Ah.04g162670 Amaranthus hybridus HOM05D003697 ORTHO05D005452 1.2e-97 363.2 1937 24.0
CiPaw.06G146300 Carya illinoinensis HOM05D003697 ORTHO05D005452 4.5e-94 351.3 1516 26.3
unitig_749.g14126 Utricularia gibba HOM05D003697 ORTHO05D005452 4.7e-91 341.3 1618 25.5
Ca_00071_v3 Cicer arietinum L. HOM05D003697 ORTHO05D005452 7.5e-89 334.0 1791 24.2
SGA_v2.0_scaffold110G31335 Striga asiatica HOM05D003697 ORTHO05D005452 1.3e-85 323.2 1913 24.2
CAN.G798.13 Capsicum annuum HOM05D003697 ORTHO05D005452 3.3e-84 318.5 487 39.0
ClCG05G009590 Citrullus lanatus HOM05D003697 ORTHO05D005452 8.0e-83 313.9 605 34.2
Hma1.2p1_0217F.1_g092210 Hydrangea macrophylla HOM05D003697 ORTHO05D005452 4.1e-79 301.6 487 38.8
Cc02_g22700 Coffea canephora HOM05D003697 ORTHO05D005452 2.0e-78 299.3 492 38.4
ECA233G0288 Erigeron canadensis HOM05D003697 ORTHO05D005452 6.2e-75 287.7 542 35.4
MCO01G725 Micromonas commoda HOM05D003697 ORTHO05D005452 1.7e-72 279.6 1805 24.3
Psat1g220480 Pisum sativum HOM05D003697 ORTHO05D005452 2.0e-70 272.7 417 40.0
Gorai.008G028000 Gossypium raimondii HOM05D003697 ORTHO05D005452 3.5e-70 271.9 1506 24.2
Dinv19381 Davidia involucrata HOM05D003697 ORTHO05D005452 4.3e-68 265.0 455 37.1
Cfa024915 Carpinus fangiana HOM05D003697 ORTHO05D005452 4.9e-64 251.5 471 35.2
Nitab4.5_0008466g0010 Nicotiana tabacum HOM05D003697 ORTHO05D005452 3.5e-62 245.4 1778 22.7
ClCG05G009570 Citrullus lanatus HOM05D003697 ORTHO05D005452 7.8e-54 217.6 870 25.7
Lj5C253T9 Lonicera japonica HOM05D003697 ORTHO05D005452 2.5e-52 212.6 573 29.3
SHI16668 Sapria himalayana HOM05D003697 ORTHO05D005452 3.4e-49 202.2 875 25.8
Lj5A253T35 Lonicera japonica HOM05D003697 ORTHO05D005452 9.9e-49 200.7 656 25.8
Gorai.008G027900 Gossypium raimondii HOM05D003697 ORTHO05D005452 3.8e-48 198.7 139 64.0
Os02g0664100 Oryza sativa ssp. japonica HOM05D003697 ORTHO05D005452 6.4e-48 198.0 587 27.8
Nitab4.5_0000816g0140 Nicotiana tabacum HOM05D003697 ORTHO05D005452 9.3e-47 194.1 1416 23.0
Psat1g220520 Pisum sativum HOM05D003697 ORTHO05D005452 1.7e-45 189.9 835 25.9
Eucgr.H01580 Eucalyptus grandis HOM05D003697 ORTHO05D005452 5.1e-45 188.3 137 61.3
CAN.G798.12 Capsicum annuum HOM05D003697 ORTHO05D005452 4.3e-44 185.3 893 25.2
Cc02_g22690 Coffea canephora HOM05D003697 ORTHO05D005452 7.6e-41 174.5 603 26.2
Gohir.D12G027400 Gossypium hirsutum HOM05D003697 ORTHO05D005452 2.4e-39 169.5 118 64.4
Actinidia06460 Actinidia chinensis HOM05D003697 ORTHO05D005452 1.6e-38 166.8 118 63.6
Atru.chr6.584 Acer truncatum HOM05D003697 ORTHO05D005452 1.8e-34 153.3 448 29.0
BcaB03g14881 Brassica carinata HOM05D003697 ORTHO05D005452 1.0e-29 137.5 192 41.1
Eucgr.H01552 Eucalyptus grandis HOM05D003697 ORTHO05D005452 9.6e-28 131.0 200 36.5
Gohir.D12G027466 Gossypium hirsutum HOM05D003697 ORTHO05D005452 2.8e-27 129.4 197 39.6
Duzib132G0461 Durio zibethinus HOM05D003697 ORTHO05D005452 4.8e-27 128.6 86 66.3
Lalb_Chr20g0123551 Lupinus albus HOM05D003697 ORTHO05D005452 1.4e-23 117.1 287 28.9
Os02g0664200 Oryza sativa ssp. japonica HOM05D003697 ORTHO05D005452 6.0e-22 111.7 75 65.3
Cpa.g.sc30.3 Carica papaya HOM05D003697 ORTHO05D005452 2.5e-20 106.3 327 26.3
Psat7g198520 Pisum sativum HOM05D003697 ORTHO05D005452 7.4e-20 104.8 183 36.1
Duzib132G0509 Durio zibethinus HOM05D003697 ORTHO05D005452 6.9e-18 98.2 346 26.6
Gohir.D12G027532 Gossypium hirsutum HOM05D003697 ORTHO05D005452 1.0e-13 84.3 226 25.2
Cpa.g.sc30.5 Carica papaya HOM05D003697 ORTHO05D005452 1.8e-10 73.6 118 36.4
Psat7g198480 Pisum sativum HOM05D003697 ORTHO05D005452 8.5e-08 64.7 76 39.5
Psat0s1016g0040 Pisum sativum HOM05D003697 ORTHO05D005452 2.5e-07 63.2 67 47.8
Psat0s3298g0040 Pisum sativum HOM05D003697 ORTHO05D005452 2.7e-06 59.7 64 46.9


User provided reference genes

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